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Oryza sativa
cluster # 13448 cluster # 13448       Sequences # 13       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13448#0 length = 816 sequences # 2  
consensus_13448#1 length = 743 sequences # 7  
consensus_13448#2 length = 462 sequences # 1  
consensus_13448#3 length = 263 sequences # 1  
consensus_13448#4 length = 219 sequences # 1  
consensus_13448#5 length = 210 sequences # 1  

consensusID : consensus_13448#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 816
fasta sequence
                              [CACCACCACCATCGCACTCCCAACTCCCAAGCCGCAGCGCTAGGGTTTCCCCCAACCACCACCACCACCGCCCCCGCTAAAACCCCGATCCCCGCCTCCGCCACCGCCGCCGATGTCGACCCCCGCCGCGGGCGAGAAGCCGGCGCTGAGGAAGCCGGTGTTCACCAAGGTCGACCAGCTCAAGCCGGTCACCAGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCCACCCCCGTCCCGGGCCGCGCGCGGCCGGGCGTCGCCGCCCCGTCCCGCCCCCCGCGCATCGCGGAGTGCCTCATCGGCGACGAGACCGGCGCCATCGTCTTCACCGCCCGCAACGAGCAAGTTGACTTGTTGAAGCCTGGTGCTACAGTGATCATGCGCAATGCCAAAATCGACATGTTCAAAGGCTCAATGAGGCTTGCGGTGGACAAGTGGGGGCGTATAGAGGCTACAGAACCTGCCAGCTTTACTGTTAAGGAGGACAACAACTTGTCACTAGTAGAGTATGAGTTGGTTAACGTGACCCGAGTAA-TGTCGTTGATTCGCCCCTTCCCCTGCCATAAC-AGGAAGCATGATGACTGAGAATATTATGAACCCTTTGCCTAAGCATGTTTATTTGGTATGGTGGTAGTAGATAAGATCAAAGATCGAACTGAATTTATCCATGGTATGCGTCTACTAAGTGGTGATTCCTCTTGTTACCTGTTGCTGCCTGTATTGCTGCTGTGATGGAACAAGCTCAGCAGGGTGACATGTTGCTAGAGTACCAGTTATCAATGGAGTTAATTGTTGCAAATCCTACATTGGTG]

[+] EMBL CA754020             [CACCACCACCATCGCACTCCCAACTCCCAAGCCGCAGCGCTAGGGTTTCCCCCAACCACCACCACCACCGCCCCCGCTAAAACCCCGATCCCCGCCTCCGCCACCGCCGCCGATGTCGACCCCCGCCGCGGGCGAGAAGCCGGCGCTGAGGAAGCCGGTGTTCACCAAGGTCGACCAGCTCAAGCCGGTCACCAGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCCACCCCCGTCCCGGGCCGCGCGCGGCCGGGCGTCGCCGCCCCGTCCCGCCCCCCGCGCATCGCGGAGTGCCTCATCGGCGACGAGACCGGCGCCATCGTCTTCACCGCCCGCAACGAGCAAGTTGACTTGTTGAAGCCTGGTGCTACAGTGATCATGCGCAATGCCAAAATCGACATGTTCAAAGGCTCAATGAGGCTTGCGGTGGACAAGTGGGGGCGTATAGAGGCTACAGAACCTGCCAGCTTTACTGTTAAGGAGGACAACAACTTGTCACTAGTAGAGTATGAGTTGGTTAACGTGACCCGAGTAA TGTCGTTGATTCGCCCCTTCCCCTGCCATAAC AGGAAGCATGATGACTGAGAATATTATGAACCCTTTGCCTAAGCATGTTTATTTGGTATGGTGGTAGT                                                                                                                                                                                 ]
[+] EMBL AK073776             [                                                                                  CCCCGATCCCCGCCTCCGCCACCGCCGCCGATGTCGACCCCCGCCGCGGGCGAGAAGCCGGCGCTGAGGAAGCCGGTGTTCACCAAGGTCGACCAGCTCAAGCCGGTCACCAGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCCACCCCCGTCCCGGGCCGCGCGCGGCCGGGCGTCGCCGCCCCGTCCCGCCCCCCGCGCATCGCGGAGTGCCTCATCGGCGACGAGACCGGCGCCATCGTCTTCACCGCCCGCAACGAGCAAGTTGACTTGTTGAAGCCTGGTGCTACAGTGATCATGCGCAATGCCAAAATCGACATGTTCAAAGGCTCAATGAGGCTTGCGGTGGACAAGTGGGGGCGTATAGAGGCTACAGAACCTGCCAGCTTTACTGTTAAGGAGGACAACAACTTGTCACTAGTAGAGTATGAGTTGGTTAACGTGA CCGAGTAATTGTCGTTGATTCGCCCCTTCCCCTGCCATAACAAGGAAGCATGATGACTGAGAATATTATGAACCCTTTGCCTAAGCATGTTTATTTGGTATGGTGGTAGTAGATAAGATCAAAGATCGAACTGAATTTATCCATGGTATGCGTCTACTAAGTGGTGATTCCTCTTGTTACCTGTTGCTGCCTGTATTGCTGCTGTGATGGAACAAGCTCAGCAGGGTGACATGTTGCTAGAGTACCAGTTATCAATGGAGTTAATTGTTGCAAATCCTACATTGGTG]


>consensus_13448#0 CACCACCACCATCGCACTCCCAACTCCCAAGCCGCAGCGCTAGGGTTTCCCCCAACCACC ACCACCACCGCCCCCGCTAAAACCCCGATCCCCGCCTCCGCCACCGCCGCCGATGTCGAC CCCCGCCGCGGGCGAGAAGCCGGCGCTGAGGAAGCCGGTGTTCACCAAGGTCGACCAGCT CAAGCCGGTCACCAGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCCACCCCCGTCCC GGGCCGCGCGCGGCCGGGCGTCGCCGCCCCGTCCCGCCCCCCGCGCATCGCGGAGTGCCT CATCGGCGACGAGACCGGCGCCATCGTCTTCACCGCCCGCAACGAGCAAGTTGACTTGTT GAAGCCTGGTGCTACAGTGATCATGCGCAATGCCAAAATCGACATGTTCAAAGGCTCAAT GAGGCTTGCGGTGGACAAGTGGGGGCGTATAGAGGCTACAGAACCTGCCAGCTTTACTGT TAAGGAGGACAACAACTTGTCACTAGTAGAGTATGAGTTGGTTAACGTGACCCGAGTAAT GTCGTTGATTCGCCCCTTCCCCTGCCATAACAGGAAGCATGATGACTGAGAATATTATGA ACCCTTTGCCTAAGCATGTTTATTTGGTATGGTGGTAGTAGATAAGATCAAAGATCGAAC TGAATTTATCCATGGTATGCGTCTACTAAGTGGTGATTCCTCTTGTTACCTGTTGCTGCC TGTATTGCTGCTGTGATGGAACAAGCTCAGCAGGGTGACATGTTGCTAGAGTACCAGTTA TCAATGGAGTTAATTGTTGCAAATCCTACATTGGTG



consensusID : consensus_13448#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 743
fasta sequence
                              [NGAGNTCGACCCCACGGGTCCGCCCAAGGCGTCCGAAATCCCCCGTGCTAGGGTTTCCGCAACCGCCTCCGCTGC-TACCCACCCAACCTGCATTGCGACA-NGACGCGGCGCGGCCATGGCGACGGCGGCGAAGGG-CGGAGAGAAGCCGGCG-CTGAGGAAGCCGGTG-TTCG-TCAAGGTGGACCAGCTCAAGCCGGGCACCTGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCTAACCCCGTTCCTGCCCGTGGCCGTGCCGGAGGGGGCGGCCCGGCCGTCGGATCTCGCCCCGCGCGCATCGCCGAGTGCCTCGTCGGCGACGAGACCGGGGTCATCGTCTTCACCGCCCGCAACGAGC-AAGTGGACATGC-TGATGCCAGG-AAATACAGCAATCTTGCGGAATGCGAGAATCGATATGTTCAAGGGCTC-AATGA-GGCTTGCTGTCGACAAGTGGGGACGTGTGGAGGTTACAGAGCCTGCCAGTTTCGCCGTGAAAGAAGACAATAACCTATCGCTTGTTGAGTATGAATTGGTTAAC-GTGCCAGAGTGATTGTTCCATCAAAGTTTCTACTGCTAGCATAAAAAGGGAATGCCAAACTTGTAGTGATTTTTGTTTAAAAGATCGTAGGA-GGGGCTATGGCGTTTTGTTAAGAGTTCTCAATCAGTGAAATTCATATAAAATCCTTGTATGTGCACCCAAAAAAATGCTTATTCTCGTGACCTGATAAAAAAAAAAAAAA]

[+] EMBL AU100883             [NGAGNTCGACCCCACGGGTCCGCCCAAGGCGTCCGAAATCCCCCGTGTTAGGGTTTCCGCAACCGCTTCCGCTGCTTACCCACCCAACNTGCATTGCGACAGCGACGCGGCGCGGCCATGGCGACGGCGGCGAAGGN CGGAGAGAAGCCGGCG CTGAGGAAGCCGGTG TTCG TCAAGGTGGACCAGCTCAAGCCGGGCACCTGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCTAACCCCGTTCCTGCCCGTGGCCGTGCCGGA GGGGCGGCCCGGCCGTCGGATCTCGCCCCGCGCGCATCGCCGAGTGCCTCGTCGGCGACGAGACCGGGGTCATCGTCTTCACCGCCCGCAACGAGC AAGTGGACATGC TGATGCCAGG AAATACAGCAATCTTGCGGAATGCGAGAATCGATATGTTCAAGGGCTC AATGA GGCTTGCTGTCGACAAGTGGGGACGTGTGGAGGTTACAGAGCCTGCCAGTTTCGCCGTGAAAGAAGACAATAACCTATCGCTTGTTGAGTATGAATTGGTTAAC GTGCCAGAGTGATTGTTCCATCAAAGTTTCTACTGCTAGCATAAAAAGGGAATGCCAAACTTGTAGTGATTTTTGTTTAAAAGATCGTAGGA GGGGCTATGGCGTTTTGTTAAGAGTTCTCAATCAGTGAAATTCATATAAAAa                                                          ]
[+] EMBL AK073979             [                                gcaAAATCCCCCGTGCTAGGGTTTCCGCAACCGCCTCCGCTGC TACCCACCCAACCTGCATTGCGACAGCGACGCGGCGCGGCCATGGCGACGGCGGCGAAGGG CGGAGAGAAGCCGGCG CTGAGGAAGCCGGTG TTCG TCAAGGTGGACCAGCTCAAGCCGGGCACCTGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCTAACCCCGTTCCTGCCCGTGGCCGTGCCGGAGGGGGCGGCCCGGCCGTCGGATCTCGCCCCGCGCGCATCGCCGAGTGCCTCGTCGGCGACGAGACCGGGGTCATCGTCTTCACCGCCCGCAACGAGC AAGTGGACATGC TGATGCCAGG AAATACAGCAATCTTGCGGAATGCGAGAATCGATATGTTCAAGGGCTC AATGA GGCTTGCTGTCGACAAGTGGGGACGTGTGGAGGTTACAGAGCCTGCCAGTTTCGCCGTGAAAGAAGACAATAACCTATCGCTTGTTGAGTATGAATTGGTTAAC GTGCCAGAGTGATTGTTCCATCAAAGTTTCTACTGCTAGCATAAAAAGGGAATGCCAAACTTGTAGTGATTTTTGTTTAAAAGATCGTAGGA GGGGCTATGGCGTTTTGTTAAGAGTTCTCAATCAGTGAAATTCATATAAAATCCTTGT                                                    ]
[+] EMBL C73967               [                                         CCCGTGCTAGGGTTTCCGCAACCGNCTCCGCTGC TACCCACCCAACCTGCATTGCGACA NGACGCGNCG GGCCATGGCGACGGCGGCGAAGGG CGGAGAGAAGCCGGCG CTGAGGAAGCCGGTG TTCG TCAAGGTGGACCAGCTCAAGCCGGGCACCTGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCTAACCCCGTTCCTGCCCGTGGCCGTGCCGGAGGGGGCGGCCCGGCCGTCGGATCTCGCCCCGCGCGCATCGCCGAGTGCCTCGTCGGCG NGAGACCGGGGTCATCGTCTTCACCGCCCGCAACGAGC AAGTGGACATGC TGATGCCAGG AAATACAGCAATTTTGCGGAATNCGAGAAT                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL C93508               [                                          CCGTGCTAGGGTTTCCGCAACCGCCTCCGCTGC TACCCACCCAACCTGCATTGCGACA NGACGCGNCG GGCCATGGCGACGGCGGCGAAGGG CGGAGAGAAGCCGGCG CTGAGGAAGCCGGTG TTCG TCAAGGTGGACCAGCTCAAGCCGGGCACCTGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCTAACCCCGTTCCTGCCCGTGGCCGTGCCGGAGGGGGCGGCCCGGCCGTCGGATCTCGCCCCGNGCGCATCGCCGAGTGCCTCGTCGGCGACGAGACCGGGGTCATCGTCTTCACCGNCCGCAACGAGC AAGTGGACATGT TGATGCCAGG AAATACAGCAATCTTGCGGAATNCGAGAATCGATATGTTCAAGGGCT  AATGA GGGTTGTTGTCGACAAGTGGGGACGTtt                                                                                                                                                                                                                                                                                        ]
[+] EMBL C93516               [                                             TGCTAGGGTTTCCGCAACCGCCTCCGCTGC TACCCACCCAACCTGCATTGCGACA NGACGCGGCNNGGCCATGGCGACGGCGNCGAAGGG CGGAGAGAAGCCGGCG CTGAGGAAGCCGGTG TTCG TCAAGGTGGACCAG TCAAGCCGGGCACCTGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCTAACCCCGTTCCTGCCCGTGGTCGTGCCGGAGGGGGCGNCCC GCCGTC GATCTCGCCCCG GCGCATCGCCGAGTGCCTCGTCGNCGACGAGACCGNGGTCATCGTCTTCACCGCCCGCAACGAGC AAGTGGACATGC TG TGCCAGG AAATACAGCAATCTTGCGGAATG GAGAATCG TATGTTCAAGGG TC AATGA GG TTGCTGTCG CAAGTGNGGACGTGTGGAGG TAAANAG CTG CAGTTT                                                                                                                                                                                                                                                                ]
[+] EMBL BI795977             [                                                                                                                  cCCAT GCGACGGCGGCGAAGGGCCGGAGAGAACCCGGCGCCTGAGGAACCGGGTGTTTCGTTCCAGGTGGACCAGCTCAA CCGGGCACCT CGGCCACACCCTCACCGTCAA GTCGTCAGCGCTAACCCCGTTCCTGCCCGT GCCGCGCCGGA GGGGC GCCCGGCCGTCGGATCTCGCCCCGCGCGCATCGCCGAGTGCCTCGTCGGCGACGAGACCGGGGTCATCGTCTTCACCGCCCGCAACGAGC AAGTGGACATGC TGATGCCAGG AAATACAGCAATCTTGCGGAATGCGAGAATCGATATGTTCAAGGGCTC AATGA GGCTTACTGTCGACAAGTGGGGACGTGTGGAGGTTACAGAGCCTGCCAGTTTCGCCGTGAAAGAAGACAATAACCTATCGCTTGTTGAGTATGAATTGGTTAAC GTGCCAGAGTGATTGTTCCATCAAAGTTTCTACTGCTAGCATAAAAAGGGAATGCC AACTTGTAGTGATTTTTGTTTAAAAGATTGTAGGAGGGGGCTATGGCGTTTTGTTAAGAGTTCTCAATCAGTGAAATTCATATAAAATCCTTGTATGTGCACCCAAAAAAA                                   ]
[+] EMBL AU182726             [                                                                                                                                                                                                                                                                                                                                                                     CCGCAACGAGCAAAGTGGACATGCTTAATGCCAGGAAAATCCANCAATCTTCGGGAATGCGAGAATCGATATGTTCAAGGGCTCAAATGAGGGCTTGCTGTCGACAAGTGGGNACGTGTGGAGGTTACANAGCCTGCCAGTTTCGCCGTGAAAGAAGACAATAACCTATCGCTTGTTGAGTATGAATTGGTTAACGGTGCCAGAGTGATTGTTCCATCAAAGTTTCTACTGCTAGCATAAAAAGGGAATGCCAAACTTGTAGTGATTTTTGTTTAAAAGATCGTAGGA GGGGCTATGGCGTTTTGTTAAGAGTTCTCAATCAGTGAAATTCATATAAAATCCTTGTGTGTGCACCCATCAAGTTGCTTATTCTCGTGACCTGATAAAAAAAAAAAAAA]


>consensus_13448#1 NGAGNTCGACCCCACGGGTCCGCCCAAGGCGTCCGAAATCCCCCGTGCTAGGGTTTCCGC AACCGCCTCCGCTGCTACCCACCCAACCTGCATTGCGACANGACGCGGCGCGGCCATGGC GACGGCGGCGAAGGGCGGAGAGAAGCCGGCGCTGAGGAAGCCGGTGTTCGTCAAGGTGGA CCAGCTCAAGCCGGGCACCTGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCTAACCC CGTTCCTGCCCGTGGCCGTGCCGGAGGGGGCGGCCCGGCCGTCGGATCTCGCCCCGCGCG CATCGCCGAGTGCCTCGTCGGCGACGAGACCGGGGTCATCGTCTTCACCGCCCGCAACGA GCAAGTGGACATGCTGATGCCAGGAAATACAGCAATCTTGCGGAATGCGAGAATCGATAT GTTCAAGGGCTCAATGAGGCTTGCTGTCGACAAGTGGGGACGTGTGGAGGTTACAGAGCC TGCCAGTTTCGCCGTGAAAGAAGACAATAACCTATCGCTTGTTGAGTATGAATTGGTTAA CGTGCCAGAGTGATTGTTCCATCAAAGTTTCTACTGCTAGCATAAAAAGGGAATGCCAAA CTTGTAGTGATTTTTGTTTAAAAGATCGTAGGAGGGGCTATGGCGTTTTGTTAAGAGTTC TCAATCAGTGAAATTCATATAAAATCCTTGTATGTGCACCCAAAAAAATGCTTATTCTCG TGACCTGATAAAAAAAAAAAAAA



consensusID : consensus_13448#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence
                              [AGGGTGTCACAGAGACACCTGCCCACAGCGGTTGTCACTTGGTTAAAGGGTAGGCACTACACACAACTGGGTCAACTAGTAGGAGTGATGGATGTTGGGGGTTAAACGTGGCACACAGAGTGAATTGGTCCAGTTGGATTCGCGCCACACTGTGCACCACTGCGCCCAATGAAAAATAGGGATACGCTATGGATGGACCTGGAGGAAATATTGATGGACACCCTGTGGCGCCTAACGCAATGGTTTAATTTTGGGTAATGGTGGTAGTAGATAAGATCAAAGTATCGAACTGGAATGTTATCCCACTGGTATGGCGTGCTACTAAGGGCCCGATTCCTCTTGGTTAACCTGTTGCTGCGCCTGTATTGGCTGCTGTGATGGGAACCAAGCTCCACCAGGGTAACATGTTGCTAGAGTACCAGTTATCAATGGAATTAATTGTTGCAAAATCCTCCAAAAAAA]

[+] EMBL BI803006             [AGGGTGTCACAGAGACACCTGCCCACAGCGGTTGTCACTTGGTTAAAGGGTAGGCACTACACACAACTGGGTCAACTAGTAGGAGTGATGGATGTTGGGGGTTAAACGTGGCACACAGAGTGAATTGGTCCAGTTGGATTCGCGCCACACTGTGCACCACTGCGCCCAATGAAAAATAGGGATACGCTATGGATGGACCTGGAGGAAATATTGATGGACACCCTGTGGCGCCTAACGCAATGGTTTAATTTTGGGTAATGGTGGTAGTAGATAAGATCAAAGTATCGAACTGGAATGTTATCCCACTGGTATGGCGTGCTACTAAGGGCCCGATTCCTCTTGGTTAACCTGTTGCTGCGCCTGTATTGGCTGCTGTGATGGGAACCAAGCTCCACCAGGGTAACATGTTGCTAGAGTACCAGTTATCAATGGAATTAATTGTTGCAAAATCCTCCAAAAAAA]


>consensus_13448#2 AGGGTGTCACAGAGACACCTGCCCACAGCGGTTGTCACTTGGTTAAAGGGTAGGCACTAC ACACAACTGGGTCAACTAGTAGGAGTGATGGATGTTGGGGGTTAAACGTGGCACACAGAG TGAATTGGTCCAGTTGGATTCGCGCCACACTGTGCACCACTGCGCCCAATGAAAAATAGG GATACGCTATGGATGGACCTGGAGGAAATATTGATGGACACCCTGTGGCGCCTAACGCAA TGGTTTAATTTTGGGTAATGGTGGTAGTAGATAAGATCAAAGTATCGAACTGGAATGTTA TCCCACTGGTATGGCGTGCTACTAAGGGCCCGATTCCTCTTGGTTAACCTGTTGCTGCGC CTGTATTGGCTGCTGTGATGGGAACCAAGCTCCACCAGGGTAACATGTTGCTAGAGTACC AGTTATCAATGGAATTAATTGTTGCAAAATCCTCCAAAAAAA



consensusID : consensus_13448#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence
                              [CCCTGCCATAAAAAGGAAGCATGATGACTGAGAATATTATGAACCCTTTGCCTAAGCACTGTTTATTTGGTATGGTGGTAGTAGATAAGATCCAAGATCGAACTGAATTTATCCACTGGTATGCGTCTACTAAGTGGTGATTCCTCTTGTTACCTGTTGCTGCCTGTATTGCTGCTGTGATGGAACAAGCTCAGCCAGGGTGACATGTTGCTAGAGTACCCGTTATCAATGGAATTAATTGTTGCAAAATCCCAAAAAAAAAA]

[+] EMBL BI802417             [CCCTGCCATAAAAAGGAAGCATGATGACTGAGAATATTATGAACCCTTTGCCTAAGCACTGTTTATTTGGTATGGTGGTAGTAGATAAGATCCAAGATCGAACTGAATTTATCCACTGGTATGCGTCTACTAAGTGGTGATTCCTCTTGTTACCTGTTGCTGCCTGTATTGCTGCTGTGATGGAACAAGCTCAGCCAGGGTGACATGTTGCTAGAGTACCCGTTATCAATGGAATTAATTGTTGCAAAATCCCAAAAAAAAAA]


>consensus_13448#3 CCCTGCCATAAAAAGGAAGCATGATGACTGAGAATATTATGAACCCTTTGCCTAAGCACT GTTTATTTGGTATGGTGGTAGTAGATAAGATCCAAGATCGAACTGAATTTATCCACTGGT ATGCGTCTACTAAGTGGTGATTCCTCTTGTTACCTGTTGCTGCCTGTATTGCTGCTGTGA TGGAACAAGCTCAGCCAGGGTGACATGTTGCTAGAGTACCCGTTATCAATGGAATTAATT GTTGCAAAATCCCAAAAAAAAAA



consensusID : consensus_13448#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence
                              [AGTATGAATTGGTTAACGTGCCAGAGTGATTGTTCCATCAAAGTTTCTACTGCTAGCATAAAAAGGGAATGCCAAACTTGTAGTGATTTTTGTTTAAAAGATCGTAGGAGGGGCTATGGCGTTTTGTTAAGAGTTCTCAATCAGTGAAATTCATATAAAATCAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU161335             [AGTATGAATTGGTTAACGTGCCAGAGTGATTGTTCCATCAAAGTTTCTACTGCTAGCATAAAAAGGGAATGCCAAACTTGTAGTGATTTTTGTTTAAAAGATCGTAGGAGGGGCTATGGCGTTTTGTTAAGAGTTCTCAATCAGTGAAATTCATATAAAATCAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13448#4 AGTATGAATTGGTTAACGTGCCAGAGTGATTGTTCCATCAAAGTTTCTACTGCTAGCATA AAAAGGGAATGCCAAACTTGTAGTGATTTTTGTTTAAAAGATCGTAGGAGGGGCTATGGC GTTTTGTTAAGAGTTCTCAATCAGTGAAATTCATATAAAATCAAAAAAAAAAACAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_13448#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 210
fasta sequence
                              [GCTGAGCTTGTTCCATCACAGCAGCAATACAGGCAGCAACAGGTAACAAGAGGAATCACCACTTAGTAGACGCATACCAGTTATCAATGGAGTTAATTGTTGCAAATCCTACATTGGTGAATATTGCCATATTGCCTTTTTGTGACCGCTGTAATATTTGTGTGTTGTCTCCAGAATGTCAAGCTTGAGCTATGTCAAAAAAAAAAAAAA]

[+] EMBL AU091749             [GCTGAGCTTGTTCCATCACAGCAGCAATACAGGCAGCAACAGGTAACAAGAGGAATCACCACTTAGTAGACGCATACCAGTTATCAATGGAGTTAATTGTTGCAAATCCTACATTGGTGAATATTGCCATATTGCCTTTTTGTGACCGCTGTAATATTTGTGTGTTGTCTCCAGAATGTCAAGCTTGAGCTATGTCAAAAAAAAAAAAAA]


>consensus_13448#5 GCTGAGCTTGTTCCATCACAGCAGCAATACAGGCAGCAACAGGTAACAAGAGGAATCACC ACTTAGTAGACGCATACCAGTTATCAATGGAGTTAATTGTTGCAAATCCTACATTGGTGA ATATTGCCATATTGCCTTTTTGTGACCGCTGTAATATTTGTGTGTTGTCTCCAGAATGTC AAGCTTGAGCTATGTCAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13448#2      ------------------------------------------------------------
consensus_13448#3      ------------------------------------------------------------
consensus_13448#0      CACCACCACCATCGCACTCCCAACTCCCAAGCCGCAGCGCTAGGGTTTCCCCCAACCACC 60
consensus_13448#1      ------------------------------------------------------------
consensus_13448#4      ------------------------------------------------------------
consensus_13448#5      ------------------------------------------------------------
                                                                                   

consensus_13448#2      ------------------------------------------------------------
consensus_13448#3      ------------------------------------------------------------
consensus_13448#0      ACCACCACCGCCCCCGCTAAAACCCCGATCCCCGCCTCCGCCACCGCCGCCGATGTCGAC 120
consensus_13448#1      ---------------------------------------------------------NGA 3
consensus_13448#4      ------------------------------------------------------------
consensus_13448#5      ------------------------------------------------------------
                                                                                   

consensus_13448#2      ------------------------------------------------------------
consensus_13448#3      ------------------------------------------------------------
consensus_13448#0      CCCCGCCGCGGGCGAGAAGCCGGCGCTGAGGAAGCCGGTGTTCACCAAGGTCGACCAGCT 180
consensus_13448#1      GNTCGACCCCACGGGTCCGCCCAAGGCGTCCGAAATCCCCCGTGCTAGGGTTTCCGCAAC 63
consensus_13448#4      ------------------------------------------------------------
consensus_13448#5      ------------------------------------------------------------
                                                                                   

consensus_13448#2      ------------------------------------------------------------
consensus_13448#3      ------------------------------------------------------------
consensus_13448#0      CAAGCCGGTCACCAGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCCACCCCCGTCCC 240
consensus_13448#1      CGCCTCCGCTGCTACCCACCCAACCTGCATTGCGACANGACGCGGCGCGGCCATGGCGAC 123
consensus_13448#4      ------------------------------------------------------------
consensus_13448#5      ------------------------------------------------------------
                                                                                   

consensus_13448#2      ------------------------------------------------------------
consensus_13448#3      ------------------------------------------------------------
consensus_13448#0      GGGCCGCGCGCGGCCGGGCGTCGCCGCCCCGTCCCGCCCCCCGCGCATCGCGGAGTGCCT 300
consensus_13448#1      GGCGGCGAAGGGCGGAGAGAAGCCGGCGCTGAGGAAGCCGGTGTTCGTCAAGGTGGACCA 183
consensus_13448#4      ------------------------------------------------------------
consensus_13448#5      ------------------------------------------------------------
                                                                                   

consensus_13448#2      ------------------------------------------------------------
consensus_13448#3      ------------------------------------------------------------
consensus_13448#0      CATCGGCGACGAGACCGGCGCCATCGTCTTCACCGCCCGCAACGAGCAAGTTGACTTGTT 360
consensus_13448#1      GCTCAAGCCGGGCACCTGCGGCCACACCCTCACCGTCAAGGTCGTCAGCGCTAACCCCGT 243
consensus_13448#4      ------------------------------------------------------------
consensus_13448#5      ------------------------------------------------------------
                                                                                   

consensus_13448#2      ---------------------------------AGGGTGTCACAGAGACACCTGCCCACA 27
consensus_13448#3      ------------------------------------------------------------
consensus_13448#0      GAAGCCTGGTGCTACAGTGATCATGCGCAATGCCAAAATCGACATGTTCAAAGGCTCAAT 420
consensus_13448#1      TCCTGCCCGTGGCCGTGCCGGAGGGGGCGGCCCGGCCGTCGGATCTCGCCCCGCGCGCAT 303
consensus_13448#4      ------------------------------------------------------------
consensus_13448#5      ------------------------------------------------------------
                                                                                   

consensus_13448#2      GCGGTTGTCACTTGGTTAAAGGGTAGGCACTACACACAACTGGGTCAACTAGTAGGAGTG 87
consensus_13448#3      ------------------------------------------------------------
consensus_13448#0      GAGGCTTGCGGTGGACAAGTGGGGGCGTA-TAGAGGCTACAGAACCTGCCAGCTTTACTG 479
consensus_13448#1      CGCCGAGTGCCTCGTCGGCGACGAGACCGGGGTCATCGTCTTCACCGCCCGCAACGAGCA 363
consensus_13448#4      ------------------------------------------------------------
consensus_13448#5      ------------------------------------------------------------
                                                                                   

consensus_13448#2      ATGGATGTTGGGGGTTAAACGTGGCACACAGAGTG-AATTGGTCCAGTTGGATTCGCGCC 146
consensus_13448#3      ------------------------------------------------------------
consensus_13448#0      TTA-AGGAGGACAACAACTTGTCACTAGTAGAGTATGAGTTGGTTAACGTGACCCGAGTA 538
consensus_13448#1      AGTGGACATGCTGATGCCAGGAAATACAGCAATCTTGCGGAATGCGAGAATCGATATGTT 423
consensus_13448#4      ------------------------------------------------------------
consensus_13448#5      ------------------------------------------------------------
                                                                                   

consensus_13448#2      ACACTGTGCAC-CACTGCGCCCAATGAAAAATAGGGATACGCTATGGATGGACCTGGAGG 205
consensus_13448#3      -------------------CCCTGCCATAAAAAGGAA-GCATGATGACTGAG-------- 32
consensus_13448#0      ATGTCGTTGATTCGCCCCTTCCCCTGCCATAACAGGAAGCATGATGACTGAG-------- 590
consensus_13448#1      CAAGGGCTCAATGAGGCTTGCTGTCGACAAGTGGGGACGTGTGGAGGTTACAGAGCCTGC 483
consensus_13448#4      ------------------------------------------------------------
consensus_13448#5      ------------------------------------------------------------
                                                                                   

consensus_13448#2      AAATATTGATGGACACCCTGTGGCGCCTAACGCAATGGTTTAATTTTGGGTAATGGTGGT 265
consensus_13448#3      -AATATT-ATGAACCCTTTG-----CCTAA-GCACTG-TTTA--TTTGGT--ATGGTGGT 79
consensus_13448#0      -AATATT-ATGAACCCTTTG-----CCTAA-GCA-TG-TTTA--TTTGGT--ATGGTGGT 636
consensus_13448#1      CAGTTTCGCCGTGAAAGAAGACAATAACCTATCGCTTGTTGAGTATGAATTGGTTAACGT 543
consensus_13448#4      -----------------------------------------AGTATGAATTGGTTAACGT 19
consensus_13448#5      --------------------------------------GCTGAGCTTGTTCCATCACAGC 22
                                                                    *       *    * 

consensus_13448#2      AGTAGATAAGATCAAAGTATCGAACTGGAATGTTATCCCACTGGTATGG---CGTGCTAC 322
consensus_13448#3      AGTAGATAAGATCCAAG-ATCGAACTGAA---TTTATCCACTGGTATG----CGT-CTAC 130
consensus_13448#0      AGTAGATAAGATCAAAG-ATCGAACTGAA---TTTATCCA-TGGTATG----CGT-CTAC 686
consensus_13448#1      GCCAGA-GTGATTGTTCCATCAAAGT------TTCTACTGCTAGCATAAAAAGGGAATGC 596
consensus_13448#4      GCCAGA-GTGATTGTTCCATCAAAGT------TTCTACTGCTAGCATAAAAAGGGAATGC 72
consensus_13448#5      AGCAATACAGGCAGCAACAGGTAACAAGAGGAATCACCACTTAGTAGA----CGC-ATAC 77
                          *     *        *   **         *   *   * * *       *   * *

consensus_13448#2      TAAGGGCCCGATTCCTCTTGGTTAACCTGTTGCTGCGCCTGTATTGGCTGCTGTGATGGG 382
consensus_13448#3      TAAGTGGT-GATTCCTCTTGTT--ACCTGTTGCTGC--CTGTATTG-CTGCTGTGATGGA 184
consensus_13448#0      TAAGTGGT-GATTCCTCTTGTT--ACCTGTTGCTGC--CTGTATTG-CTGCTGTGATGGA 740
consensus_13448#1      CAAACTTGTAGTGATTTTTGTTTAAAAGATCGTAGGAGGGGCTATG-GCGTTTTGTTAAG 655
consensus_13448#4      CAAACTTGTAGTGATTTTTGTTTAAAAGATCGTAGGAGGGGCTATG-GCGTTTTGTTAAG 131
consensus_13448#5      CAGTT-----ATCAATGGAGTT--AATTGTTGCAAATCCTACATTGGTGAATATTGCCAT 130
                        *         *   *   * *  *    * *            **     * *      

consensus_13448#2      AAC-CAAGCTCCACCAGGGTAACATGTTGCTAGAGTACCAGTTATCAATGGAATTAATTG 441
consensus_13448#3      A---CAAGCTCAGCCAGGGTGACATGTTGCTAGAGTACCCGTTATCAATGGAATTAATTG 241
consensus_13448#0      A---CAAGCTC-AGCAGGGTGACATGTTGCTAGAGTACCAGTTATCAATGGAGTTAATTG 796
consensus_13448#1      AGTTCTCAATCAGTGAAATTCATATAAAATCCTTGTATGTGCACCCAAAAAAATGCTTAT 715
consensus_13448#4      AGTTCTCAATCAGTGAAATTCATATAAAATCAAAAAAAAAA-ACAAAAAAAAAAAAAAAA 190
consensus_13448#5      A---TTGCCTTTTTGTGACCGCTGTAATATTTGTGTGT-TGTCTCCAGAATGTCAAGCTT 186
                       *        *              *                     *             

consensus_13448#2      TTGCAAAATCCTCCAAAAAAA-------- 462
consensus_13448#3      TTGCAAAATCCCAAAAAAAAAA------- 263
consensus_13448#0      TTGCAAA-TCCTACATTGGTG-------- 816
consensus_13448#1      TCTCGTGACCTGATAAAAAAAAAAAAAA- 743
consensus_13448#4      AAAAAAAAAAAAAAAAAAAAAAAAAAAAA 219
consensus_13448#5      GAGCTATGTCAAAAAAAAAAAAAA----- 210
                                     *              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)