These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2238 fasta sequence [CTCGCCACATTCGCCGCGCGCGTCACACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGATCCCCGCTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTTCGACGCCGAGG-TGCTCGACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGCGAAGCTGTACTGGGGCGACGCCAGGGAGAAGCTCTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGTATAACTCCTACTTCTGTTTGCAATGTTGTTGCCTCATCAATCAAGAATCAAAATTGCAGGCATTGACCATAGAACTTGCCTTTGGGCCAGTTGCTAATATTCCTGTTCAGATAGACAAGCTCTGTCGAGAACGATGCACTGCTTAAATCGATAATTAAACTACATACTGTGTCCAGTTCCGTGGTACGGTAGTTTTTAATCTCAACACATAATTGCATTGCACTGGAAATTTGGGGGCCAAATGCGTATCTGACTTGGCCTTGCAACTTGAATCATTACAGCCAATGAGATTGGATTATCGAGCATTTCAGTTGCACTTGTTTTTTTCTGTGGGACCGCCAAGGCATCAACTTGTTGCCTTCACGATTAATAAATTGTAAGAGCAAGTACAATAGCTGGCTATAAACCAGCTGTAAATATATTTTAAGAAGATAAATGAGGAGAGAGAAGGGTAGTGGGCTACAGATTTGTAGCCAACTATAGCACGAACTCCAAGACGCAGTGTGTGTATGACAGGCGGGACCAAATATTAATAGTGTAGTATGTAATTATTGTATAAATGAGCTATTAGGTTGGCTATAGATGAATTGGAGCTAGTAGTTGGCTATACTATTAAACTTGCTCTAAAGTCGCATGTTCATCCTTGAGACATGTATATCCTGATTCTTGGTCGGCGCGTTGTTTTATGTTCTCATGTGAAACTCCTTTTCATATTCAAATGTTTCCCATGTACAGTTTGAGCATAAGAATGATGTATATATATAGAGTTAGTTCAACAACTAGAATGCTTGTGCTATTTCAATATCCAAATACAGAAGTTTATATACAGGAACGTGATTATCTTGGTTTTAGCCTCTTAGGTTAGTGTCCACGTCCAAAGACTATAACTATTTAGTCTATAACATATTGAGTGGATGATATGCATTGTTAGCTTGAAACTTACTATTGTCATCTTGATTCAGAACAGAAAATTGTGAAGTTTGGAGATGCGATGTCTAATGAACGTTTGGGAGTATACGCTTTGCGCATATGGCAGTATTTGTTTAGGGCTGGTTTGGTTCGATGCCTAAATTAGTCTTACCAATATTTGGCAATTTCAATAGTGTTTAGTGTCTATTTGGTTTGAAGCCAAATTTTGTTATGCCTAAGAAAATAGGTCATTTCAATAATGAACTTATTAGACTATTTTGGCTTCAATCTAAACACAACTTTGTCTTACCAAAATTAGTCATACCAAAAATTACCAAATTTTGGTACTGATAGAATTTGGTAAGGCCTATTTAGACCACAAACCAAACCAACTCTTTAGTGATTCTCTAGCTTCTGAATTGAATCCAGCACACCATATAATAGTCTCATCGACTTTTTAGCTCGTTATGATTTCATCTGCAACTTTCCTGTCTGCCAACATTTTACAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCAGCCTTCCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAACCATGTGAATCACTTTATATATATAGACCGAATTTGAGG] [+] EMBL AK073600 [CTCGCCACATTCGCCGCGCGCGTCACACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGATCCCCGCTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGG TGCTCGACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGCGAAGCTGTACTGGGGCGACGCCAGGGAGAAGCTCTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGTATAACTCCTACTTCTGTTTGCAATGTTGTTGCCTCATCAATCAAGAATCAAAATTGCAGGCATTGACCATAGAACTTGCCTTTGGGCCAGTTGCTAATATTCCTGTTCAGATAGACAAGCTCTGTCGAGAACGATGCACTGCTTAAATCGATAATTAAACTACATACTGTGTCCAGTTCCGTGGTACGGTAGTTTTTAATCTCAACACATAATTGCATTGCACTGGAAATTTGGGGGCCAAATGCGTATCTGACTTGGCCTTGCAACTTGAATCATTACAGCCAATGAGATTGGATTATCGAGCATTTCAGTTGCACTTGTTTTTTTCTGTGGGACCGCCAAGGCATCAACTTGTTGCCTTCACGATTAATAAATTGTAAGAGCAAGTACAATAGCTGGCTATAAACCAGCTGTAAATATATTTTAAGAAGATAAATGAGGAGAGAGAAGGGTAGTGGGCTACAGATTTGTAGCCAACTATAGCACGAACTCCAAGACGCAGTGTGTGTATGACAGGCGGGACCAAATATTAATAGTGTAGTATGTAATTATTGTATAAATGAGCTATTAGGTTGGCTATAGATGAATTGGAGCTAGTAGTTGGCTATACTATTAAACTTGCTCTAAAGTCGCATGTTCATCCTTGAGACATGTATATCCTGATTCTTGGTCGGCGCGTTGTTTTATGTTCTCATGTGAAACTCCTTTTCATATTCAAATGTTTCCCATGTACAGTTTGAGCATAAGAATGATGTATATATATAGAGTTAGTTCAACAACTAGAATGCTTGTGCTATTTCAATATCCAAATACAGAAGTTTATATACAGGAACGTGATTATCTTGGTTTTAGCCTCTTAGGTTAGTGTCCACGTCCAAAGACTATAACTATTTAGTCTATAACATATTGAGTGGATGATATGCATTGTTAGCTTGAAACTTACTATTGTCATCTTGATTCAGAACAGAAAATTGTGAAGTTTGGAGATGCGATGTCTAATGAACGTTTGGGAGTATACGCTTTGCGCATATGGCAGTATTTGTTTAGGGCTGGTTTGGTTCGATGCCTAAATTAGTCTTACCAATATTTGGCAATTTCAATAGTGTTTAGTGTCTATTTGGTTTGAAGCCAAATTTTGTTATGCCTAAGAAAATAGGTCATTTCAATAATGAACTTATTAGACTATTTTGGCTTCAATCTAAACACAACTTTGTCTTACCAAAATTAGTCATACCAAAAATTACCAAATTTTGGTACTGATAGAATTTGGTAAGGCCTATTTAGACCACAAACCAAACCAACTCTTTAGTGATTCTCTAGCTTCTGAATTGAATCCAGCACACCATATAATAGTCTCATCGACTTTTTAGCTCGTTATGATTTCATCTGCAACTTTCCTGTCTGCCAACATTTTACAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCAGCCTTCCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAACCATGTGAATCACTTTATATATATAGACCGAATTTGAGG] [+] EMBL OSC1041 [ ncnanCACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCG CAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGNGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGATCCCCGTTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATGAAGAAGTACGGCGTG ANTTCGACG CGAGGTTGTTC ACATGTTCGACAAGGCGGCGGGCANTTTGAAGTTTACCCTAATGGCGAA TTGTANTTGGGCGAC ] [+] EMBL C74212 [ GAGGAGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGANGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGAT CCCGCTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATNCAGCAGTACGGCGTGCACTTCGACGCCGAAG TGCTCa ] consensusID : consensus_13463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 854 fasta sequence [ACGAGGCCACATTCGCCGCGCGCGTCACACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGATCCCTGGATTCCATTCCTCCAGCGCTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGGTGCTCGACATGCTCGACACGGCGGCGCG-CCAGTTGGAGCTTACCGTAGTGGCGAAGCTGTACTGGGGCGACGCCAGGGAGAAGCTCTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCAGCCTTCCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAACCATGTGAATCACTTTATATATCTAGACCGAATTTGAGGTTTTACTTTCAAAAAA] [+] EMBL BP184882 [ACGAGGCCACATTCGCCGCGCGCGTCACACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGATCCCTGGATTCCATTCCTCCAGCGCTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGGTGCTCGACATGCTCGACACGGCGGCGCG CCAGTTGGAGCTTACCGTAGTGGCGAAGCTGTACTGGGGCGACGCCAGGGAGAAGCTCTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGT ] [+] EMBL BI799125 [ TCTCCGAGTTCCGGGATCCGACGGCGAT CA CAGTACGGCGTGCACTGCGACGCCGAGGTGCTCGACATGCTCGACACGGCGGCGCGCCCAGTTGGAGCTTACCGTAGTGGCGAAGCTGTACTGGGGCGACGCCAGGGAGAAGCTCTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGCCAGCCGCGGCCTCGGCTCGATCCAGAGGATTCTTCTGGGGAGTGTGAC AACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCAGCCTTCCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAACCATGTGAATCACTTTATATATCTAGACCGAATTTGAGGTTTTACTTTCAAAA ] [+] EMBL AU174358 [ TCGACATGCTCGACACGGCGGCGCG CCAGTTGGAGCTTNCCGTAGTGGCGAAGCTGTACTGGGGCGACGCCAGGGAGAAGCTNTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGATTNTTNTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCAGCCTTCCCAGGTTNTTNTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAACCATGTGAATCACTTTATATATATAGACCGAATTTGAGGTTTTACTTTCAAAAAA] [+] EMBL BI797719 [ TTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCAGCCTTCCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAACCATGTGAATCACTTTATATATCTAGACCGAATTTGAGGTTTTACTTTCAAAA ] consensusID : consensus_13463#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 815 fasta sequence [GCCACATTCGCCGCGCGCGTCACACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGATCCCCGCTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGGTGCTCGACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGCGAAGCTGGACTGGGGCGACGCCAGGGAGAAGCTCTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCAGCCTTCCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAACCATGTGAATCACTTTATATATATAGACCGAATTTGAGG] [+] EMBL AK063881 [GCCACATTCGCCGCGCGCGTCACACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGATCCCCGCTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGGTGCTCGACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGCGAAGCTGGACTGGGGCGACGCCAGGGAGAAGCTCTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCAGCCTTCCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAACCATGTGAATCACTTTATATATATAGACCGAATTTGAGG] [+] EMBL AB110169 [ AGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGATCCCCGCTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGGTGCTCGACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGCGAAGCTGTACTGGGGCGACGCCAGGGAGAAGCTCTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCAGCCTTCCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAACCATGTGAATCACTTTATATATATAGACCGAATTTGAGG] consensusID : consensus_13463#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence [CACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGATCCCCGCTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGGTGCTCGACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGCGAAGCTGTACTGGGGCGACGCCAGGGAGAAGCTCTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCACCCTTCCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA756490 [CACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGATCCCCGCTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGGTGCTCGACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGCGAAGCTGTACTGGGGCGACGCCAGGGAGAAGCTCTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCACCCTTCCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA997955 [ CGAGCAAGGGAGCAAGCGAGGAGAGAGGAGAGGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCGAGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCCGGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACGCCCTGTGGGGCAAGTCCGGATCCCCGCTGATCCCTCTCTCCGAGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGGTGCTCGACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGCGAAGCTGTACTGGGGCGACGCCAGGGAGAAGCTCTGCGACGCCGTCGAGGAGCAGAAGATCGACACGCTCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAAC ] consensusID : consensus_13463#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 371 fasta sequence [CAGAACAGCCACGGAGGGTTGCCATTCTACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGCAGAAGCTGTACTGGGGCAGACGCCAGGGAGAAGCTCTGCAGACCCCGTCGAGGACAGAAGATCGACACAGCATCAGTCATGGCAGCCAGCGGCCTCGGCTCGATCCAGGAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTGGCTACGGTATCTGAATAAAGCGTGTATGGAAATTCTATTGTGTTTGTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI797430 [CAGAACAGCCACGGAGGGTTGCCATTCTACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGCAGAAGCTGTACTGGGGCAGACGCCAGGGAGAAGCTCTGCAGACCCCGTCGAGGACAGAAGATCGACACAGCATCAGTCATGGCAGCCAGCGGCCTCGGCTCGATCCAGGAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTGGCTACGGTATCTGAATAAAGCGTGTATGGAAA ] [-] EMBL CA760604 [ ggacgagCCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAGCTTCTATTGTGTTTGTAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13463#1 ACGAGGCCACATTCGCCGCGCGCGTCACACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGA 60 consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 -----GCCACATTCGCCGCGCGCGTCACACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGA 55 consensus_13463#3 ---------------------------CACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGA 33 consensus_13463#0 --CTCGCCACATTCGCCGCGCGCGTCACACGAGCAAGGGAGCAAGCGAGGAGAGAGGAGA 58 consensus_13463#1 GGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCG 120 consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 GGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCG 115 consensus_13463#3 GGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCG 93 consensus_13463#0 GGCTTAGCGAGAGAGGTGAGGAGAGGAGAGGATTTGGAACTTTTGATCTTTGGGATCGCG 118 consensus_13463#1 AGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGA 180 consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 AGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGA 175 consensus_13463#3 AGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGA 153 consensus_13463#0 AGACGACGGAGATGGCCGGTGGCGGCAGGGCCGATGACGAGCGAAGGATCGGGGTGGCGA 178 consensus_13463#1 TGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCC 240 consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 TGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCC 235 consensus_13463#3 TGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCC 213 consensus_13463#0 TGGACTACTCGGCGAGCAGCAAGAGGGCGCTGGACTGGGCCATCGCCAACCTGCTCCGCC 238 consensus_13463#1 GGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACG 300 consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 GGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACG 295 consensus_13463#3 GGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACG 273 consensus_13463#0 GGGGCGACCACCTCGTCGTCCTCCACGTCCTGCATCACGGCGGGGAGGAGGCCAAGCACG 298 consensus_13463#1 CCCTGTGGGGCAAGTCCGGATCCCTGGATTCCATTCCTCCAGCGCTGATCCCTCTCTCCG 360 consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 CCCTGTGGGGCAAGTCCGGATCCC------------------CGCTGATCCCTCTCTCCG 337 consensus_13463#3 CCCTGTGGGGCAAGTCCGGATCCC------------------CGCTGATCCCTCTCTCCG 315 consensus_13463#0 CCCTGTGGGGCAAGTCCGGATCCC------------------CGCTGATCCCTCTCTCCG 340 consensus_13463#1 AGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGGTGCTCG 420 consensus_13463#4 --------------------------CAGAACAGC-CACGGAGGGTTGCCA-----TTCT 28 consensus_13463#2 AGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGGTGCTCG 397 consensus_13463#3 AGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTGCGACGCCGAGGTGCTCG 375 consensus_13463#0 AGTTCCGGGATCCGACGGCGATGCAGCAGTACGGCGTGCACTTCGACGCCGAGGTGCTCG 400 *** ** ** * * *** ** consensus_13463#1 ACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGC-GAAGCTGTACTGG 479 consensus_13463#4 ACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGCAGAAGCTGTACTGG 88 consensus_13463#2 ACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGC-GAAGCTGGACTGG 456 consensus_13463#3 ACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGC-GAAGCTGTACTGG 434 consensus_13463#0 ACATGCTCGACACGGCGGCGCGCCAGTTGGAGCTTACCGTAGTGGC-GAAGCTGTACTGG 459 ********************************************** ******* ***** consensus_13463#1 GGC-GACGCCAGGGAGAAGCTCTGC-GACGCCGTCGAGGAGCAGAAGATCGACACG---C 534 consensus_13463#4 GGCAGACGCCAGGGAGAAGCTCTGCAGACCCCGTCGAGGA-CAGAAGATCGACACAGCAT 147 consensus_13463#2 GGC-GACGCCAGGGAGAAGCTCTGC-GACGCCGTCGAGGAGCAGAAGATCGACACG---C 511 consensus_13463#3 GGC-GACGCCAGGGAGAAGCTCTGC-GACGCCGTCGAGGAGCAGAAGATCGACACG---C 489 consensus_13463#0 GGC-GACGCCAGGGAGAAGCTCTGC-GACGCCGTCGAGGAGCAGAAGATCGACACG---C 514 *** ********************* *** ********** ************** consensus_13463#1 TCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAG-AGGATT-------CTTCTGG--GG 584 consensus_13463#4 CAGTCATGGCAGCCAGCGGCCTCGGCTCGATCCAGGAGGATT-------CTTCTGG--GG 198 consensus_13463#2 TCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAG-AGGATT-------CTTCTGG--GG 561 consensus_13463#3 TCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAG-AGGATT-------CTTCTGG--GG 539 consensus_13463#0 TCGTCATGGGCAGCCGCGGCCTCGGCTCGATCCAGAGGTATAACTCCTACTTCTGTTTGC 574 ******* * ******************** * ** ****** * consensus_13463#1 AGTGTGACAAACTACGTGCT-----GTCAAA--CGCAT-CATGCCCTGTAACAGTCGTC- 635 consensus_13463#4 AGTGTGACAAACTACGTGCT-----GTCAAA--CGCAT-CATGCCCTGTAACAGTCGTCC 250 consensus_13463#2 AGTGTGACAAACTACGTGCT-----GTCAAA--CGCAT-CATGCCCTGTAACAGTCGTC- 612 consensus_13463#3 AGTGTGACAAACTACGTGCT-----GTCAAA--CGCAT-CATGCCCTGTAACAGTCGTC- 590 consensus_13463#0 AATGTTGTTGCCTCATCAATCAAGAATCAAAATTGCAGGCATTGACCATAGAACTTGCCT 634 * *** ** * ***** *** *** * ** * * * * consensus_13463#1 AAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATC 695 consensus_13463#4 AAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTGGCTACGGTATC 310 consensus_13463#2 AAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATC 672 consensus_13463#3 AAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATACTGTTACTGTTGCTACTGTATC 650 consensus_13463#0 TTGGGCCAGTTGCTAATATTCCTGTTCAGATAGACAAGCT-CTGTCGAGAACGATGCA-C 692 *** *** ** * * * * ** * ** * * * * * consensus_13463#1 TGAATAAAGCGTGTATGGAACTTC-TTTTGTGTTT---------GTAATGTTGCAGCCTT 745 consensus_13463#4 TGAATAAAGCGTGTATGGAAATTC-TATTGTGTTT---------GTAAAAAAAAAAAAAA 360 consensus_13463#2 TGAATAAAGCGTGTATGGAACTTC-TTTTGTGTTT---------GTAATGTTGCAGCCTT 722 consensus_13463#3 TGAATAAAGCGTGTATGGAACTTC-TTTTGTGTTT---------GTAATGTTGCACCCTT 700 consensus_13463#0 TGCTTAAATCGATAATTAAACTACATACTGTGTCCAGTTCCGTGGTACGGTAGTTTTTAA 752 ** **** ** ** ** * * * ***** *** consensus_13463#1 CCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAACCATGT 805 consensus_13463#4 AAAAAAAAAAA------------------------------------------------- 371 consensus_13463#2 CCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAACCATGT 782 consensus_13463#3 CCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTGTGCTCAAAAAAAA 760 consensus_13463#0 TCTCAACACATAATTGCATTGCACTGGAAATTTGGGGGCCAAATGCGTATCTGACTTGGC 812 consensus_13463#1 GAATCACTTTATATATCTAGACCGAATTTGAGGTTTTACTTTCAAAAAA----------- 854 consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 GAATCACTTTATATATATAGACCGAATTTGAGG--------------------------- 815 consensus_13463#3 AAAAAAAAAAAAAAAAAAA----------------------------------------- 779 consensus_13463#0 CTTGCAACTTGAATCATTACAGCCAATGAGATTGGATTATCGAGCATTTCAGTTGCACTT 872 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 GTTTTTTTCTGTGGGACCGCCAAGGCATCAACTTGTTGCCTTCACGATTAATAAATTGTA 932 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 AGAGCAAGTACAATAGCTGGCTATAAACCAGCTGTAAATATATTTTAAGAAGATAAATGA 992 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 GGAGAGAGAAGGGTAGTGGGCTACAGATTTGTAGCCAACTATAGCACGAACTCCAAGACG 1052 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 CAGTGTGTGTATGACAGGCGGGACCAAATATTAATAGTGTAGTATGTAATTATTGTATAA 1112 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 ATGAGCTATTAGGTTGGCTATAGATGAATTGGAGCTAGTAGTTGGCTATACTATTAAACT 1172 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 TGCTCTAAAGTCGCATGTTCATCCTTGAGACATGTATATCCTGATTCTTGGTCGGCGCGT 1232 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 TGTTTTATGTTCTCATGTGAAACTCCTTTTCATATTCAAATGTTTCCCATGTACAGTTTG 1292 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 AGCATAAGAATGATGTATATATATAGAGTTAGTTCAACAACTAGAATGCTTGTGCTATTT 1352 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 CAATATCCAAATACAGAAGTTTATATACAGGAACGTGATTATCTTGGTTTTAGCCTCTTA 1412 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 GGTTAGTGTCCACGTCCAAAGACTATAACTATTTAGTCTATAACATATTGAGTGGATGAT 1472 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 ATGCATTGTTAGCTTGAAACTTACTATTGTCATCTTGATTCAGAACAGAAAATTGTGAAG 1532 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 TTTGGAGATGCGATGTCTAATGAACGTTTGGGAGTATACGCTTTGCGCATATGGCAGTAT 1592 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 TTGTTTAGGGCTGGTTTGGTTCGATGCCTAAATTAGTCTTACCAATATTTGGCAATTTCA 1652 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 ATAGTGTTTAGTGTCTATTTGGTTTGAAGCCAAATTTTGTTATGCCTAAGAAAATAGGTC 1712 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 ATTTCAATAATGAACTTATTAGACTATTTTGGCTTCAATCTAAACACAACTTTGTCTTAC 1772 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 CAAAATTAGTCATACCAAAAATTACCAAATTTTGGTACTGATAGAATTTGGTAAGGCCTA 1832 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 TTTAGACCACAAACCAAACCAACTCTTTAGTGATTCTCTAGCTTCTGAATTGAATCCAGC 1892 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 ACACCATATAATAGTCTCATCGACTTTTTAGCTCGTTATGATTTCATCTGCAACTTTCCT 1952 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 GTCTGCCAACATTTTACAGGATTCTTCTGGGGAGTGTGACAAACTACGTGCTGTCAAACG 2012 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 CATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATAT 2072 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 ACTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTA 2132 consensus_13463#1 ------------------------------------------------------------ consensus_13463#4 ------------------------------------------------------------ consensus_13463#2 ------------------------------------------------------------ consensus_13463#3 ------------------------------------------------------------ consensus_13463#0 ATGTTGCAGCCTTCCCAGGTTCTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTG 2192 consensus_13463#1 ---------------------------------------------- consensus_13463#4 ---------------------------------------------- consensus_13463#2 ---------------------------------------------- consensus_13463#3 ---------------------------------------------- consensus_13463#0 TGCTCAACCATGTGAATCACTTTATATATATAGACCGAATTTGAGG 2238 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||