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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1612 fasta sequence
[AAACACCAACACACCCACCTTCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCGGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGGTATGTCACTCTGTTCTCTCAGTGACTTGTAATCTGATTGTCAACGGAAGTGTTTGTGGATATCTGAGTAAACATTGGTCTATTGTACTTTCAGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACC-TAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA-CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA-TAATATGTTACTATTGCTGAGGAACTGCGCATATGGACATGAGTGCTTTATTATTTC]
[+] EMBL AK072924 [AAACACCAACACACCCACCTTCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCGGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGGTATGTCACTCTGTTCTCTCAGTGACTTGTAATCTGATTGTCAACGGAAGTGTTTGTGGATATCTGAGTAAACATTGGTCTATTGTACTTTCAGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACC TAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA TAATATGTTACT ]
[+] EMBL CA765180 [ ACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGCCTGCTGGAGCTTGGTGGTGATGTGAACC TAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGTCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTAGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATNAAGTAATGAAGTATTAATATGGTACTATTGCTGAGGAACTGng ]
[-] EMBL CB665671 [ GTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACC TAGTTAAATGGCAAAATTCTCCTCAT GTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCTATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA TAATATGTTACTATTGCTGAGGAACTGCGCATATGGACATGAGTGCTTTATTATTTC]
[-] EMBL CB671447 [ TCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACC TAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA TAATATGTTACTATTGCTGAGGAACTGCGCATAAGGGCATGAGTGCTTTATTATTT ]
[+] EMBL AU068034 [ ACCTTAGTTAAATGGCAAAATTCCCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA TAATATGTTACTATTGCTGAGGAAaaaa ]
[+] EMBL BI806863 [ CTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAATCGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCGGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA TAATATGTTACTATTGCTGAGGAAaaaaa ]
consensusID : consensus_13476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1474 fasta sequence
[CCCCCCCCTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCTCGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACCTAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAACGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB671446 [CCCCCCCCTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCTCGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTG ]
[+] EMBL CB665670 [ GGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCTCGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACCTAGTTAAATGGCAAAATTCTCCTCAT GTCACTACAAGCATCA ]
[-] EMBL CB650109 [ TTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACCTAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAACGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTA ]
[-] EMBL CA762570 [ GAGCTTGGTGGGGATGTGACCCTAGTTTAATGGCAAATTTCTCCTCATGTAGGTCACTCCAAGCATCTTCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCCCAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGTCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAACGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTTTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAAAAAAAAAAAAAAAAAAA ]
[+] EMBL CF311351 [ GTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13476#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 762 fasta sequence
[TCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTNCGGGCGTACGTNGAGCTGTACGCGGCGCTCGGGTTGGCGTNCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAANGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGTATAGTTTTCTGCTTTCTTCCTTTGTTGTACGCACTTTGCTCATTACAGTTTAGCCTAGAGCTATATTGCCGAAAATAAAATAGTGTAGGAAAATTTTGACCCATGTTGGTGAAAGCTTCATATATATTTTCTTCTCACTACAGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACA]
[+] EMBL AU068033 [TCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTNCGGGCGTACGTNGAGCTGTACGCGGCGCTCGGGTTGGCGTNCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAANGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGG ]
[+] EMBL CB650108 [ CCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCTCGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGTATAGTTTTCTGCTTTCTTCCTTTGTTGTACGCACTTTGCTCATTACAGTTTAGCCTAGAGCTATATTGCCGAAAATAAAATAGTGTAGGAAAATTTTGACCCATGTTGGTGAAAGCTTCATATATATTTTCTTCTCACTACAGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13476#0 AAACACCAACACACCCACCTTCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGG 60
consensus_13476#1 -----------------------CCCCCCCCTCGTCTTCCCCCAATTCAAGAAGCGGAGG 37
consensus_13476#2 --------------------TCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGG 40
***** * *****************************
consensus_13476#0 AGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGG 120
consensus_13476#1 AGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGG 97
consensus_13476#2 AGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGG 100
************************************************************
consensus_13476#0 GGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTG 180
consensus_13476#1 GGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTG 157
consensus_13476#2 GGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTG 160
************************************************************
consensus_13476#0 ATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCG 240
consensus_13476#1 ATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCG 217
consensus_13476#2 ATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTNCGGGCGTACGTNGAGCTGTACGCG 220
*********************************** *********** ************
consensus_13476#0 GCGCG-GGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGAT 299
consensus_13476#1 GCGCTCGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGAT 277
consensus_13476#2 GCGCTCGGGTTGGCGTNCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGAT 280
**** **** ***** *******************************************
consensus_13476#0 AAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGA 359
consensus_13476#1 AAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGA 337
consensus_13476#2 AANGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGA 340
** *********************************************************
consensus_13476#0 CCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTT 419
consensus_13476#1 CCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTT 397
consensus_13476#2 CCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTT 400
************************************************************
consensus_13476#0 CTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTA 479
consensus_13476#1 CTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTA 457
consensus_13476#2 CTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGTATAGTTT---TCTGCT 457
******************************************* *** * **
consensus_13476#0 AGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGT----CCTGTAG--ATTTTGTTAGT 533
consensus_13476#1 AGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGT----CCTGTAG--ATTTTGTTAGT 511
consensus_13476#2 TTCTTCCTTTGTTGTACGCACTTTGCTCATTACAGTTTAGCCTAGAGCTATATTGCCGAA 517
* * *** *** * * * *** *** ** ** ***
consensus_13476#0 GATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGT 593
consensus_13476#1 GATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGT 571
consensus_13476#2 AATAAAATAGTGTAGGAAAATTTTGACCCATGT-TGGTGAAAGCTTCATATATATTTTCT 576
** ** ***** ** * **** ** * * *
consensus_13476#0 ATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAA 653
consensus_13476#1 ATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAA 631
consensus_13476#2 -TCTCACTACAGG-----AGGAGTATCAACTTGTA---AGAGACTGTCTTTGCGGGCAGA 627
** * * * ** * ** ** * *** ** * ** **** *
consensus_13476#0 TTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGGTATGTCACTCT 713
consensus_13476#1 TTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTG------------ 679
consensus_13476#2 TGTACGACTCGA-GTCCTGTAGATTTTGT-------TAGTGATTTGGG------------ 667
* * * * * ** * * * *** * ** * ** * *
consensus_13476#0 GTTCTCTCAGTGACTTGTAATCTGATTGTCAACGGAAGTGTTTGTGGATATCTGAGTAAA 773
consensus_13476#1 ------------------------------------------------------------
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 CATTGGTCTATTGTACTTTCAGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGA 833
consensus_13476#1 ----------------------CATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGA 717
consensus_13476#2 -------------------CACCCGATTTCTCCTTCACCCAAGT---GTCCTGAAGATGT 705
* ** *** ** ** * ** ******* *
consensus_13476#0 TGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGG 893
consensus_13476#1 TGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGG 777
consensus_13476#2 CTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCT--CGGGACTAGACA- 762
* ** *** * * ** * * * * * * * ** ** ** *
consensus_13476#0 TGATGTGAACCTAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCC 953
consensus_13476#1 TGATGTGAACCTAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCC 837
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 TGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAG 1013
consensus_13476#1 TGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAG 897
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 CAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTC 1073
consensus_13476#1 CAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTC 957
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 CGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCC 1133
consensus_13476#1 CGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCC 1017
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 GATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAACGAAGAGCC 1193
consensus_13476#1 GATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAACGAAGAGCC 1077
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 GAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTT 1253
consensus_13476#1 GAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTT 1137
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 GGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCC 1313
consensus_13476#1 GGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCC 1197
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 TTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAA 1373
consensus_13476#1 TTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAA 1257
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 TCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATG 1433
consensus_13476#1 TCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATG 1317
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 CATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATT 1493
consensus_13476#1 CATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATT 1377
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 TGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAG 1553
consensus_13476#1 TGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAAAAAAA 1437
consensus_13476#2 ------------------------------------------------------------
consensus_13476#0 TATAATATGTTACTATTGCTGAGGAACTGCGCATATGGACATGAGTGCTTTATTATTTC 1612
consensus_13476#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 1474
consensus_13476#2 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||