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Oryza sativa
cluster # 13483 cluster # 13483       Sequences # 13       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13483#0 length = 1679 sequences # 9  
consensus_13483#1 length = 547 sequences # 1  
consensus_13483#2 length = 449 sequences # 1  
consensus_13483#3 length = 403 sequences # 1  
consensus_13483#4 length = 196 sequences # 1  

consensusID : consensus_13483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1679
fasta sequence
                              [GAGGAGACGAATCGTTGGAGAAGCGAAGCGACGCTACTCGACCCAGCGTCCACGGCGAGCGCCCCCCGCCGGCGACGGCGACGGCGAGAGATGCGGGCCCGAGCCGCCGACCACCTCGAGGCGCTCTCCCTGGAGATCGAGCGCAAGCTGCAGAAGGCTCTCAACTCCAATTCGCAACGTCTTCAGCTGCTGCAGCAGTTGTTTGCTGACATCGCATTGAAGGTGGATGACCGCGCTCGAGATGTGATTTTAAGCACGAACGATGATGGTATTGCTCCAGTAGATGAGCGAGAAGATACCCGGTTGTGCTTCTATGAGATTCTTGCTAACCATTTTGTTAAAGTACCTGAAAGTGGGAGGCGTATACTTGACTTGATAGTGCAACTCTGGAGCCAGTCTTTTGCAGCGAACATATTTGCACTTCTTTTCCACAGATGGTTATTCGAAGTCCCTCTTGATGGGAAGGAAGTATCACTGAGATACAGCTCTGCTCTTGTCCAAGGAGCTACTAATGTTTTTTGGATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAATTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCAGTACAGGCTGGTAGAGGTCTTTTCCTCCTCCTCTCGAGATTTATGCTGTTCTATGATCAAGATCACTTGCTTGCAAGTTTCCTTGAGCATTTTCCTACTTTTCCAAATTCTTTCTTGGTTGGTGGCCCTGCAGATTACTATGTAATTGAACTCACTGATCAGCTCCAGAAACTAAAAGTTGAACCTGTGCTTCTGCATTACCTCTCCCGCTTGACCATCCTTCAAGGATTGGAATTGAGGATGAGTACAAGCA-CTAGACTGAAGGC-TTGCCTTT-ACAGCTTCACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATACACTGGATCTGCTTTTTCCTGTTGGCCGATATCCAAGGCATGTGATAAGCCTGTTCTTTCGGCTTCTCTATCCGTGGTAC-TGGCCTTCCTCTTGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCATA-GGGAC-TGAA-GAAATGGC-AGCCAAATC-AAAGGCTAGCAATAGCATCTTGTGTT-GTTTTTGTTTTCCTTTTCTTTTTTGTTTT-CAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTGTAT-AAATTTGTCTGTTTGTTATGCTGTTTACACGGGGGATGGAGTGAGAAAAAAAAAGTAATGCAAGAGAAAAGAAAGGGAAGCCTGCAAATTTCATCAGACTTTTCAGATAGGAAATTACATTGTTCAGATTTAGTATATGTCAATAATCAATGGCCGAGATTTTAGGAAGAGTCTCCATAGAGTCCCTTTTGCAATGCAGTGCATGGTCTGTTGAGGTAGTTGAGCAGCAAATGGCTAATGTGCAGTTTGTACCTTGTGTTGTAATACAACTAAGGGTCCAGGCAATGAATTGCTTAGGACCTCTGCACTGTAGCTGCCATGAGCAAGAGTGAACTGTTTATCTGTAGTCTGTACTGCACATAAATAGATGATTGTCTCTGTTTAAAAAA]

[+] EMBL CF278564             [GAGGAGACGAATCGTTGGAGAAGCGAAGCGACGCTACTCGACCCAGCGTCCACGGCGAGCGCCCCCCGCCGGCGACGGCGACGGCGAGAGATGCGGGCCCGAGCCGCCGACCACCTCGAGGCGCTCTCCCTGGAGATCGAGCGCAAGCTGCAGAAGGCTCTCAACTCCAATTCGCAACGTCTTCAGCTGCTGCAGCAGTTGTTTGCTGACATCGCATTGAAGGTGGATGACCGCGCTCGAGATGTGATTTTAAGCACGAACGATGATGGTATTGCTCCAGTAGATGAGCGAGAAGATACCCGGTTGTGCTTCTATGAGATTCTTGCTAACCATTTTGTTAAAGTACCTGAAAGTGGGAGGCGTATACTTGACTTGATAGTGCAACTCTGGAGCCAGTCTTTTGCAGCGAACATATTTGCACTTCTTTTCCACAGATGGTTATTCGAAGTCCCTCTTGATGGGAAGGAAGTATCACTGAGATACAGCTCTGCTCTTGTCCAAGGAGCTACTAATGTTTTTTGGATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAATTATCTCCTTGAAGAGGTTGCTTCAGTCCCAGATCAACTGAGTAAGATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB621447             [                               CGCTACTCGACCCAGCGTCCACGGCGAGCGCCCCCCGCCGGCGACGGCGACGGCGAGAGATGCGGGCCCGAGCCGCCGACCACCTCGAGGCGCTCTCCCTGGAGATCGAGCGCAAGCTGCAGAAGGCTCTCAACTCCAATTCGCAACGTCTTCAGCTGCTGCAGCAGTTGTTTGCTGACATCGCATTGAAGGTGGATGACCGCGCTCGAGATGTGATTTTAAGCACGAACGATGATGGTATTGCTCCAGTAGATGAGCGAGAAGATACCCGGTTGTGCTTCTATGAGATTCTTGCTAACCATTTTGTTAAAGTACCTGAAAGTGGGAGGCGTATACTTGACTTGATAGTGCAACTCTGGAGCCAGTCTTTTGCAGCGAACATATTTGCACTTCTTTTCCACAGATGGTTATTCGAAGTCCCTCTTGATGGGAAGGAAGTATCACTGAGATACAGCTCTGCTCTTGTCCAAGGAGCTACTAATGTTTTTTGGATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAATTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCAGTACAGGCTGGTAGAGGTCTTTTCCTCCTCCTTTCGAGATTTATGCTGTTCTATGATCAAGATCACTTGCTTGCAAGTTTCCTTGAGCATTTTCCTACTTTTCCAAATTCTTTCTTGGTTGGTGGCCCTGCAGATTACTATGTAATTGAACTCACTGATCAGCTCCAGAAACTAAAAGTTGAACCTGTGCTTCTGCATTACCTCTCCCGCTTGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK063435             [                                                TCCACGGCGAGCGCCCCCCGCCGGCGACGGCGACGGCGAGAGATGCGGGCCCGAGCCGCCGACCACCTCGAGGCGCTCTCCCTGGAGATCGAGCGCAAGCTGCAGAAGGCTCTCAACTCCAATTCGCAACGTCTTCAGCTGCTGCAGCAGTTGTTTGCTGACATCGCATTGAAGGTGGATGACCGCGCTCGAGATGTGATTTTAAGCACGAACGATGATGGTATTGCTCCAGTAGATGAGCGAGAAGATACCCGGTTGTGCTTCTATGAGATTCTTGCTAACCATTTTGTTAAAGTACCTGAAAGTGGGAGGCGTATACTTGACTTGATAGTGCAACTCTGGAGCCAGTCTTTTGCAGCGAACATATTTGCACTTCTTTTCCACAGATGGTTATTCGAAGTCCCTCTTGATGGGAAGGAAGTATCACTGAGATACAGCTCTGCTCTTGTCCAAGGAGCTACTAATGTTTTTTGGATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAATTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCAGTACAGGCTGGTAGAGGTCTTTTCCTCCTCCTCTCGAGATTTATGCTGTTCTATGATCAAGATCACTTGCTTGCAAGTTTCCTTGAGCATTTTCCTACTTTTCCAAATTCTTTCTTGGTTGGTGGCCCTGCAGATTACTATGTAATTGAACTCACTGATCAGCTCCAGAAACTAAAAGTTGAACCTGTGCTTCTGCATTACCTCTCCCGCTTGACCATCCTTCAAGGATTGGAATTGAGGATGAGTACAAGCA CTAGACTGAAGGC TTGCCTTT ACAGCTTCACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATACACTGGATCTGCTTTTTCCTGTTGGCCGATATCCAAGGCATGTGATAAGCCTGTTCTTTCGGCTTCTCTATCCGTGGTAC TGGCCTTCCTCTTGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCATA GGGAC TGAA GAAATGGC AGCCAAATC AAAGGCTAGCAATAGCATCTTGTGTT GTTTTTGTTTTCCTTTTCTTTTTTGTTTT CAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTGTAT AAATTTGTCTGTTTGTTATGCTGTTTACACGGGGGATGGAGTGAGAAAAAAAAAGTAATGCAAGAGAAAAGAAAGGGAAGCCTGCAAATTTCATCAGACTTTTCAGATAGGAAATTACATTGTTCAGATTTAGTATATGTCAATAATCAATGGCCGAGATTTTAGGAAGAGTCTCCATAGAGTCCCTTTTGCAATGCAGTGCATGGTCTGTTGAGGTAGTTGAGCAGCAAATGGCTAATGTGCAGTTTGTACCTTGTGTTGTAATACAACTAAGGGTCCAGGCAATGAATTGCTTAGGACCTCTGCACTGTAGCTGCCATGAGCAAGAGTGAACTGTTTATCTGTAGTCTGTACTGCACATAAATAGATGATTGTCTC           ]
[+] EMBL CF306807             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ttttgaACAGGCTGGTAGAGGTCTTTTCCTCCTCCTCTCGAGATTTATGCTGTTCTATGATCAAGATCACTTGCTTGCAAGTTTCCTTGAGCATTTTCCTACTTTTCCAAATTCTTTCTTGGTTGGTGGCCCTGCAGATTACTATGTAATTGAACTCACTGATCAGCTCCAGAAACTAAAAGTTGAACCTGTGCTTCTGCATTACCTCTCCCGCTTGACCATCCTTCAAGGATTGGAATTGAGGATGAGTACAAGCA CTAGACTGAAGGC TTGCCTTT ACAGCTTCACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATACACTGGATCTGCTTTTTCCTGTTGGCCGATATCCAAGGCATGTGATAAGCCTGTTCTTTCGGCTTCTCTATCCGTGGTAC TGGCCTTCCTCTTGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF308313             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AACTAAAAGTTGAACCTGTGCTTCTGCATTACCTCTCCCGCTTGACCATCCTTCAAGGATTGGAATTGAGGATGAGTACAAGCA CTAGACTGAAGGC TTGCCTTT ACAGCTTCACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATACACTGGATCTGCTTTTTCCTGTTGGCCGATATCCAAGGCATGTGATAAGCCTGTTCTTTCGGCTTCTCTATCCGTGGTAC TGGCCTTCCTCTTGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCATA GGGAC TGAA GAAATGGC AGCCAAATC AAAGGCTAGCAATAGCATCTTGTGTTGGNTTTTGTTTTCCTTTTCTTTTTTGTTTT CAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTGTATAAAATTTGTCTGTTTGT                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI810430             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAGTACAAGCATCTAGACTGAAGGCGTTGCCTTTGACAGCTTCACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATACACTGGATCTGCTTTTTCCTGTT GCCGATATCCAAGGCATGTGATAAGCCTGTTCTTTCGGCTTCTCTATCCGTGGTACATGGCCTTCCTCTTGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCATA GGGAC TGAA GAAATGGC AGCCAAATC AAAGGCTAGCAATAGCATCTTGTATT GTTTTTGTTTTCCTTTTCTTTTTTGTTTTCCAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTGTAT AAATTTGTCTGTTTGTTAaaaaa                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU064280             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGGC TTGCCTTT ACAGCTTCACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATACACTGGATCTGCTTTTTCCTGTTGGCCGATATCCAAGGCATGTGATAAGCCTGTTCTTTCGGCTTCTCTATCCGTGGTAC TGGCCTTCCTCTTGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCATAGGGGACTTGAAGGAAATGGCAAGCCAAATCAAAAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CF308314             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATACACTGGATCTGCTTTTTCCTGTTGGCCGATATCCAAGGCATGTGATAAGCCTGTTCTTTCGGCTTCTCTATCCGTGGTAC TGGCCTTCCTCTTGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCATA GGGAC TGAA GAAATGGC AGCCAAATC AAAGGCTAGCAATAGCATCTTGTGTT GTTTTTGTTTTCCTTTTCTTTTTTGTTTT CAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTGTAT AAATTTGTCTGTTTGTTATGCTGTTTACACGGGGGATGGAGTGAGAAAAAAAAAGTAATGCAAGAGAAAAGAAAGGGAAGCCTGCAAATTTCATCAGACTTTTCAGATAGGAAATTACATTGTTCAGATTTAGTATATGTCAATAATCAATGGCCGAGATTTTAGGAAaaaaaaaa                                                                                                                                                                                                                     ]
[-] EMBL CF278565             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                C TGAA GAAATGGC AGCCAAATC AAAGGCTAGCAATAGCATCTTGTGTT GTTTTTGTTTTCCTTTTCTTTTTTGTTTT CAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATACCATTTGCTGTAT AAATTTGTCTGTTTGTTATGCTGTTTACACGGGGGATGGAGTGAGAAAAAAAAAGTAATGCAAGAGAAAAGAAAGGGAAGCCTGCAAATTTCATCAGACTTTTCAGATAGGAAATTACATTGTTCAGATTTAGTATATGTCAATAATCAATGGCCGAGATTTTAGGAAGAGTCTCCATAGAGTCCCTTTTGCAATGCAGTGCATGGTCTGTTGAGGTAGTTGAGCAGCAAATGGCTAATGTGCAGTTTGTACCTTGTGTTGTAATACAACTAAGGGTCCAGGCAATGAATTGCTTAGGACCTCTGCACTGTAGCTGCCATGAGCAAGAGTGAACTGTTTATCTGTAGTCTGTACTGCACATAAATAGATGATTGTCTCTGTTTAAAAAA]


>consensus_13483#0 GAGGAGACGAATCGTTGGAGAAGCGAAGCGACGCTACTCGACCCAGCGTCCACGGCGAGC GCCCCCCGCCGGCGACGGCGACGGCGAGAGATGCGGGCCCGAGCCGCCGACCACCTCGAG GCGCTCTCCCTGGAGATCGAGCGCAAGCTGCAGAAGGCTCTCAACTCCAATTCGCAACGT CTTCAGCTGCTGCAGCAGTTGTTTGCTGACATCGCATTGAAGGTGGATGACCGCGCTCGA GATGTGATTTTAAGCACGAACGATGATGGTATTGCTCCAGTAGATGAGCGAGAAGATACC CGGTTGTGCTTCTATGAGATTCTTGCTAACCATTTTGTTAAAGTACCTGAAAGTGGGAGG CGTATACTTGACTTGATAGTGCAACTCTGGAGCCAGTCTTTTGCAGCGAACATATTTGCA CTTCTTTTCCACAGATGGTTATTCGAAGTCCCTCTTGATGGGAAGGAAGTATCACTGAGA TACAGCTCTGCTCTTGTCCAAGGAGCTACTAATGTTTTTTGGATTGACATCCAAACCAAT ACAAGACACTTTCTCTCATTATATAATTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGAT CAACTGAGTAAGATATCAGTACAGGCTGGTAGAGGTCTTTTCCTCCTCCTCTCGAGATTT ATGCTGTTCTATGATCAAGATCACTTGCTTGCAAGTTTCCTTGAGCATTTTCCTACTTTT CCAAATTCTTTCTTGGTTGGTGGCCCTGCAGATTACTATGTAATTGAACTCACTGATCAG CTCCAGAAACTAAAAGTTGAACCTGTGCTTCTGCATTACCTCTCCCGCTTGACCATCCTT CAAGGATTGGAATTGAGGATGAGTACAAGCACTAGACTGAAGGCTTGCCTTTACAGCTTC ACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATACA CTGGATCTGCTTTTTCCTGTTGGCCGATATCCAAGGCATGTGATAAGCCTGTTCTTTCGG CTTCTCTATCCGTGGTACTGGCCTTCCTCTTGCTGGAACTTTATTATGACTTGCGTCAAG ACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCC AACCACCAAAGGATGCATAGGGACTGAAGAAATGGCAGCCAAATCAAAGGCTAGCAATAG CATCTTGTGTTGTTTTTGTTTTCCTTTTCTTTTTTGTTTTCAAGGGTAGCCTGGTAGCTC TTATGTTTGTTCAAATAACATTTGCTGTATAAATTTGTCTGTTTGTTATGCTGTTTACAC GGGGGATGGAGTGAGAAAAAAAAAGTAATGCAAGAGAAAAGAAAGGGAAGCCTGCAAATT TCATCAGACTTTTCAGATAGGAAATTACATTGTTCAGATTTAGTATATGTCAATAATCAA TGGCCGAGATTTTAGGAAGAGTCTCCATAGAGTCCCTTTTGCAATGCAGTGCATGGTCTG TTGAGGTAGTTGAGCAGCAAATGGCTAATGTGCAGTTTGTACCTTGTGTTGTAATACAAC TAAGGGTCCAGGCAATGAATTGCTTAGGACCTCTGCACTGTAGCTGCCATGAGCAAGAGT GAACTGTTTATCTGTAGTCTGTACTGCACATAAATAGATGATTGTCTCTGTTTAAAAAA



consensusID : consensus_13483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence
                              [TCAACTCCAATTCGCAACGTCTTCAGCTGCTGCAGCAGTTGTTTGCTGACATCGCATTGAAGGTGGATGACCGCGCTCGAGATGTGATTTTAAGCACGAACGATGATGGTATTGCTCCAGTAGATGAGCGAGAAGATACCCGGTTGTGCTTCTATGAGATTCTTGCTAACCATTTTGTTAAAGTACCTGAAAGTGGGAGGCGTATACTTGACTTGATAGTGCAACTCTGGAGCCAGTCTTTTGCAGCGAACATATTTGCACTTCTTTTCCACAGATGGGTATATATTAATTCTTACAACCTTATATGTTTAGAACATGCAATAGGTTGATTTTCATAACCAATATAAGTACAAACTCAATCATGTTCACAAGAAGTCATGTTTTCCATTTCCAGTAACGTTTAAGGAATTTGTTTAACCAGTACCTCAGTGAATGTGCCTTTTACCTTTTACTCCTTGCTATATGTTCCTCTGAATGAGCTAATGTCTTGGTGGTTTTAAGTTTTCACTTTTGAGTAATGTATATATGATCTCAAAAGGAAAGATAA]

[+] EMBL CF306511             [TCAACTCCAATTCGCAACGTCTTCAGCTGCTGCAGCAGTTGTTTGCTGACATCGCATTGAAGGTGGATGACCGCGCTCGAGATGTGATTTTAAGCACGAACGATGATGGTATTGCTCCAGTAGATGAGCGAGAAGATACCCGGTTGTGCTTCTATGAGATTCTTGCTAACCATTTTGTTAAAGTACCTGAAAGTGGGAGGCGTATACTTGACTTGATAGTGCAACTCTGGAGCCAGTCTTTTGCAGCGAACATATTTGCACTTCTTTTCCACAGATGGGTATATATTAATTCTTACAACCTTATATGTTTAGAACATGCAATAGGTTGATTTTCATAACCAATATAAGTACAAACTCAATCATGTTCACAAGAAGTCATGTTTTCCATTTCCAGTAACGTTTAAGGAATTTGTTTAACCAGTACCTCAGTGAATGTGCCTTTTACCTTTTACTCCTTGCTATATGTTCCTCTGAATGAGCTAATGTCTTGGTGGTTTTAAGTTTTCACTTTTGAGTAATGTATATATGATCTCAAAAGGAAAGATAA]


>consensus_13483#1 TCAACTCCAATTCGCAACGTCTTCAGCTGCTGCAGCAGTTGTTTGCTGACATCGCATTGA AGGTGGATGACCGCGCTCGAGATGTGATTTTAAGCACGAACGATGATGGTATTGCTCCAG TAGATGAGCGAGAAGATACCCGGTTGTGCTTCTATGAGATTCTTGCTAACCATTTTGTTA AAGTACCTGAAAGTGGGAGGCGTATACTTGACTTGATAGTGCAACTCTGGAGCCAGTCTT TTGCAGCGAACATATTTGCACTTCTTTTCCACAGATGGGTATATATTAATTCTTACAACC TTATATGTTTAGAACATGCAATAGGTTGATTTTCATAACCAATATAAGTACAAACTCAAT CATGTTCACAAGAAGTCATGTTTTCCATTTCCAGTAACGTTTAAGGAATTTGTTTAACCA GTACCTCAGTGAATGTGCCTTTTACCTTTTACTCCTTGCTATATGTTCCTCTGAATGAGC TAATGTCTTGGTGGTTTTAAGTTTTCACTTTTGAGTAATGTATATATGATCTCAAAAGGA AAGATAA



consensusID : consensus_13483#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence
                              [TGCCTTTACAGCTTCACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATACACTGGATCTGCTTTTTCCTGTTGGCCGATATCCAAGGCATGTGATAAGCCTGTTCTTTCGGCTTCTCTATCCGTGGTACTGGCCTTCCTCTTGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCATAGGGACTGAAGAAATGGCAGCCAAATCAAAGGCTAGCAATAGCATCTTGTGTTGTTTTTGTTTTCCTTTTCTTTTTTGTTTTCAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTGTATAAATTTGTCTGTTTGTTATGCTGTTTANNNNNNNNNNNNNNNNN]

[+] EMBL CA753958             [TGCCTTTACAGCTTCACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATACACTGGATCTGCTTTTTCCTGTTGGCCGATATCCAAGGCATGTGATAAGCCTGTTCTTTCGGCTTCTCTATCCGTGGTACTGGCCTTCCTCTTGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCATAGGGACTGAAGAAATGGCAGCCAAATCAAAGGCTAGCAATAGCATCTTGTGTTGTTTTTGTTTTCCTTTTCTTTTTTGTTTTCAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTGTATAAATTTGTCTGTTTGTTATGCTGTTTANNNNNNNNNNNNNNNNN]


>consensus_13483#2 TGCCTTTACAGCTTCACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCAT GCAGCCTGGAATACACTGGATCTGCTTTTTCCTGTTGGCCGATATCCAAGGCATGTGATA AGCCTGTTCTTTCGGCTTCTCTATCCGTGGTACTGGCCTTCCTCTTGCTGGAACTTTATT ATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAG AACATGAGACGGCCCAACCACCAAAGGATGCATAGGGACTGAAGAAATGGCAGCCAAATC AAAGGCTAGCAATAGCATCTTGTGTTGTTTTTGTTTTCCTTTTCTTTTTTGTTTTCAAGG GTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTGTATAAATTTGTCTGTTTG TTATGCTGTTTANNNNNNNNNNNNNNNNN



consensusID : consensus_13483#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence
                              [TAAGGGCATTGCAAGCCTGGAATACCACTGGGATTCTGCTTTTTTCCTGTTGGCCGATANCCAAGGCATGTGATAAGCCTGNTCTTTNCGGCTTCTCTATCCGTGGTAACTGGCCTTCCTCTTGGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCATAGGGACTGAAGAAATGGCAGCCAAATCAAAGGCTAGCAATAGCATCTTGTGTTGTTTTTGTTTTCCTTTTCTTTTTTGTTTTCAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTGTATAAATTTGTCTGTTTGTTATGCTGTTTAAAAAAAAAAAAAA]

[+] EMBL AU082983             [TAAGGGCATTGCAAGCCTGGAATACCACTGGGATTCTGCTTTTTTCCTGTTGGCCGATANCCAAGGCATGTGATAAGCCTGNTCTTTNCGGCTTCTCTATCCGTGGTAACTGGCCTTCCTCTTGGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCATAGGGACTGAAGAAATGGCAGCCAAATCAAAGGCTAGCAATAGCATCTTGTGTTGTTTTTGTTTTCCTTTTCTTTTTTGTTTTCAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTGTATAAATTTGTCTGTTTGTTATGCTGTTTAAAAAAAAAAAAAA]


>consensus_13483#3 TAAGGGCATTGCAAGCCTGGAATACCACTGGGATTCTGCTTTTTTCCTGTTGGCCGATAN CCAAGGCATGTGATAAGCCTGNTCTTTNCGGCTTCTCTATCCGTGGTAACTGGCCTTCCT CTTGGCTGGAACTTTATTATGACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTA ATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCATAGGGACTGA AGAAATGGCAGCCAAATCAAAGGCTAGCAATAGCATCTTGTGTTGTTTTTGTTTTCCTTT TCTTTTTTGTTTTCAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTG TATAAATTTGTCTGTTTGTTATGCTGTTTAAAAAAAAAAAAAA



consensusID : consensus_13483#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 196
fasta sequence
                              [TTTTTGTTTTCCTCTTTCTTTGTTTTTTGTTTTCACAGGGTTAAGCCTGGTAGCTCTTATGTTTGTTCCAATAACATTTGCTGTATAAATTTGTCTGTTTGTTATGCTGTTTACCCGGGGGATGGAGTGAGAAAAAAAAAAGTAATCCCAGAGAAAAGAAAGGGAAGCCTCCCAATTTCATCAGACTTTTCAGATA]

[+] EMBL BI807111             [TTTTTGTTTTCCTCTTTCTTTGTTTTTTGTTTTCACAGGGTTAAGCCTGGTAGCTCTTATGTTTGTTCCAATAACATTTGCTGTATAAATTTGTCTGTTTGTTATGCTGTTTACCCGGGGGATGGAGTGAGAAAAAAAAAAGTAATCCCAGAGAAAAGAAAGGGAAGCCTCCCAATTTCATCAGACTTTTCAGATA]


>consensus_13483#4 TTTTTGTTTTCCTCTTTCTTTGTTTTTTGTTTTCACAGGGTTAAGCCTGGTAGCTCTTAT GTTTGTTCCAATAACATTTGCTGTATAAATTTGTCTGTTTGTTATGCTGTTTACCCGGGG GATGGAGTGAGAAAAAAAAAAGTAATCCCAGAGAAAAGAAAGGGAAGCCTCCCAATTTCA TCAGACTTTTCAGATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      GAGGAGACGAATCGTTGGAGAAGCGAAGCGACGCTACTCGACCCAGCGTCCACGGCGAGC 60
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      GCCCCCCGCCGGCGACGGCGACGGCGAGAGATGCGGGCCCGAGCCGCCGACCACCTCGAG 120
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      GCGCTCTCCCTGGAGATCGAGCGCAAGCTGCAGAAGGCTCTCAACTCCAATTCGCAACGT 180
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      CTTCAGCTGCTGCAGCAGTTGTTTGCTGACATCGCATTGAAGGTGGATGACCGCGCTCGA 240
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      GATGTGATTTTAAGCACGAACGATGATGGTATTGCTCCAGTAGATGAGCGAGAAGATACC 300
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      CGGTTGTGCTTCTATGAGATTCTTGCTAACCATTTTGTTAAAGTACCTGAAAGTGGGAGG 360
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      CGTATACTTGACTTGATAGTGCAACTCTGGAGCCAGTCTTTTGCAGCGAACATATTTGCA 420
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      CTTCTTTTCCACAGATGGTTATTCGAAGTCCCTCTTGATGGGAAGGAAGTATCACTGAGA 480
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      TACAGCTCTGCTCTTGTCCAAGGAGCTACTAATGTTTTTTGGATTGACATCCAAACCAAT 540
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      ACAAGACACTTTCTCTCATTATATAATTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGAT 600
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      CAACTGAGTAAGATATCAGTACAGGCTGGTAGAGGTCTTTTCCTCCTCCTCTCGAGATTT 660
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      ATGCTGTTCTATGATCAAGATCACTTGCTTGCAAGTTTCCTTGAGCATTTTCCTACTTTT 720
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      CCAAATTCTTTCTTGGTTGGTGGCCCTGCAGATTACTATGTAATTGAACTCACTGATCAG 780
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      CTCCAGAAACTAAAAGTTGAACCTGTGCTTCTGCATTACCTCTCCCGCTTGACCATCCTT 840
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ---------------------------------------------TGCCTTTACAGCTTC 15
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      CAAGGATTGGAATTGAGGATGAGTACAAGCACTAGACTGAAGGCTTGCCTTTACAGCTTC 900
consensus_13483#1      ---------------------------------------------TCAACTCCAATTCGC 15
                                                                                   

consensus_13483#2      ACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATAC- 74
consensus_13483#3      -------------------------------TAAGGGCATTGCA---AGCCTGGAATACC 26
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      ACTTCTCCTGGAGGTCCTACCTACCCTACACGAGCAGTAAGGCATGCAGCCTGGAATAC- 959
consensus_13483#1      AACGTCTTCAGCTGCTGCAGCAGTTGTTTGCTGACATCGCATTGAAGGTGGATGACCGCG 75
                                                                                   

consensus_13483#2      ACTGGA--TCTGCTTTTT-CCTGTTGGCCGATATCCAAGG--CATGTGATAAGCCTGTTC 129
consensus_13483#3      ACTGGGATTCTGCTTTTTTCCTGTTGGCCGATANCCAAGG--CATGTGATAAGCCTGNTC 84
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      ACTGGA--TCTGCTTTTT-CCTGTTGGCCGATATCCAAGG--CATGTGATAAGCCTGTTC 1014
consensus_13483#1      CTCGAGATGTGATTTTAAGCACGAACGATGATGGTATTGCTCCAGTAGATGAGCGAGAAG 135
                                                                                   

consensus_13483#2      TTTC-GGCTTCTCTATCCGTGGTA--CTGGCCTTCCTCTTG-CTGGA--ACTTTATTATG 183
consensus_13483#3      TTTNCGGCTTCTCTATCCGTGGTAA-CTGGCCTTCCTCTTGGCTGGA--ACTTTATTATG 141
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      TTTC-GGCTTCTCTATCCGTGGTA--CTGGCCTTCCTCTTG-CTGGA--ACTTTATTATG 1068
consensus_13483#1      ATACCCGGTTGTGCTTCTATGAGATTCTTGCTAACCATTTTGTTAAAGTACCTGAAAGTG 195
                                                                                   

consensus_13483#2      ACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAAC 243
consensus_13483#3      ACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAAC 201
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      ACTTGCGTCAAGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAAC 1128
consensus_13483#1      GGAGGCGTATACTTGACTTGATAGTGCAACTCTGGAGCCAGTCTTTTGCAGCGAACATAT 255
                                                                                   

consensus_13483#2      ATGAGACGGCCCAACCACCAAAGGATGCATAGGGACTGAAGAAATGGCAGCCAAATCAAA 303
consensus_13483#3      ATGAGACGGCCCAACCACCAAAGGATGCATAGGGACTGAAGAAATGGCAGCCAAATCAAA 261
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      ATGAGACGGCCCAACCACCAAAGGATGCATAGGGACTGAAGAAATGGCAGCCAAATCAAA 1188
consensus_13483#1      TTGC-ACTTCTTTTCCACAGATGGGTATATATTAATTCTTACAACCTTATATGTTTAGAA 314
                                                                                   

consensus_13483#2      GGCTAGCAATAGCATCTTGTGTTGTTTTTGTTTTCCTTTTCTTTTTTGTTTTCA-AGG-- 360
consensus_13483#3      GGCTAGCAATAGCATCTTGTGTTGTTTTTGTTTTCCTTTTCTTTTTTGTTTTCA-AGG-- 318
consensus_13483#4      ------------------TTTTTGTTTTCCTCTTTCTTTG-TTTTTTGTTTTCACAGG-- 39
consensus_13483#0      GGCTAGCAATAGCATCTTGTGTTGTTTTTGTTTTCCTTTTCTTTTTTGTTTTCA-AGG-- 1245
consensus_13483#1      CATGCAATAGGTTGATTTTCATAACCAATATAAGTACAAACTCAATCATGTTCACAAGAA 374
                                            *        *          *   *  * **** * *  

consensus_13483#2      GT--AGCCTGGTAGCTC---TTATGTTTGTTCAAATAACATTTGCTGTATAAATTTGTCT 415
consensus_13483#3      GT--AGCCTGGTAGCTC---TTATGTTTGTTCAAATAACATTTGCTGTATAAATTTGTCT 373
consensus_13483#4      GTTAAGCCTGGTAGCTC---TTATGTTTGTTCCAATAACATTTGCTGTATAAATTTGTCT 96
consensus_13483#0      GT--AGCCTGGTAGCTC---TTATGTTTGTTCAAATAACATTTGCTGTATAAATTTGTCT 1300
consensus_13483#1      GTCATGTTTTCCATTTCCAGTAACGTTTAAGGAATTTGTTTAACCAGTACCTCAGTGAAT 434
                       **   *  *   *  **   * * ****     * *    *   * ***      **  *

consensus_13483#2      GTTTGTTATGCTGTTTANNNNNNNNNNNNNNNNN-------------------------- 449
consensus_13483#3      GTTTGTTATGCTGTTTAAAAAAAAAAAAAA------------------------------ 403
consensus_13483#4      GTTTGTTATGCTGTTTACCCGGGGGATGGAGTGAGAAAAAAAAAAGTAATCCCAGAGAAA 156
consensus_13483#0      GTTTGTTATGCTGTTTACACGGGGGATGGAGTGAGAAAAAAAAA-GTAATGCAAGAGAAA 1359
consensus_13483#1      GTGCCTTTTACCTTTTACTCCTTGCTATATGTTCCTCTGAATGAGCTAATGTCTTGGTGG 494
                       **   ** * *  ****                                           

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      AGAAAGGGAAGCCTCCCAATTTCATCAGACTTTTCAGATA-------------------- 196
consensus_13483#0      AGAAAGGGAAGCCTGCAAATTTCATCAGACTTTTCAGATAGGAAATTACATTGTTCAGAT 1419
consensus_13483#1      TTTTAAGTTTTCACTTTTGAGTAATGTATATATGATCTCAAAAGGAAAGATAA------- 547
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      TTAGTATATGTCAATAATCAATGGCCGAGATTTTAGGAAGAGTCTCCATAGAGTCCCTTT 1479
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      TGCAATGCAGTGCATGGTCTGTTGAGGTAGTTGAGCAGCAAATGGCTAATGTGCAGTTTG 1539
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      TACCTTGTGTTGTAATACAACTAAGGGTCCAGGCAATGAATTGCTTAGGACCTCTGCACT 1599
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      ------------------------------------------------------------
consensus_13483#3      ------------------------------------------------------------
consensus_13483#4      ------------------------------------------------------------
consensus_13483#0      GTAGCTGCCATGAGCAAGAGTGAACTGTTTATCTGTAGTCTGTACTGCACATAAATAGAT 1659
consensus_13483#1      ------------------------------------------------------------
                                                                                   

consensus_13483#2      --------------------
consensus_13483#3      --------------------
consensus_13483#4      --------------------
consensus_13483#0      GATTGTCTCTGTTTAAAAAA 1679
consensus_13483#1      --------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)