These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1477 fasta sequence [TCGAATCAAATCCATCTCTTTTCTCCCCTTCCTTCCTTCCGCCTCGCCTCCCCTTCCCCTCCTCGCCGCCTCGCTCCCCTCCGCCGCGCCGTCCCGTCGAATCCCGCCATGCCGAAGGGTGCCAAGAAGCGCGCCAAGCTCAAGAAGAAGCAGCAGGGGGACCACCCCGCCGGCTCCGATGACGGCGGCAACAACAACAACAACAAAAACAACGCCGCCGAAAACGGCAGCAATGACTCCAGCCGCCGCCGCGACGCCGCCAGCGACGGCAACCACCACCTACCGTCGCGACCAAACGTTCCTCATGTGGATGTGAGTGAGGACTCCATGGAGAGCTCCGAGGAGATGGTGACGCCGAGGGCCGCCGCGTCCGAGGCGGACGAGGAGGAGAGGAAGGCCGCCACG-TCGGAGGTGCCCGTGGAGGTGG-TCGAGGCCGGGGAGGAGG-TCATGGTGGACGCCTTGCCGCCCGAAGCCGCCGCAGGTGCGCAGGAGCAACAGGGTAAGGCGGAGGCGCTTGTGGTGGTGCAGGAACCGGAGGTGAAGCGCGAGGAGTTGGTGGCCAAGGTGCATCCGATGCATGACCCGGAACCGCAGGGCGAGGAGGTGCTCATCGTGGAGGCGGCTGCGGTATCCGCGGTGCAAGAACCGGAGGTGAAGCGCGATGAGGTGGTGGTCATGGAGACGGCTGCGCCGCC-TGCGGTGCAGGAATCGGAGACG-AAGAGCGGTGGGGTGTTGGTCAAGGATGTGGTGGAGGTGTCACGGTCTCTGGGTGCAGCTGATACTACAGAGGTGGCCCGGGGACCTGCAGTGGCTGTGGCTGCAGCAGGGCAGCGGGCAACATGGTGGAATTGCTGTGGGGTATTTGATGCGTTCTCTGGTTCGGAGAGATAGATTAAGGTTGGAACTTGGAAGCCAAGAAGACAGTAGACGCGAAGTTGTTCAAAGCTGATGGTAATTGTAACTAGTCTGGTTTATGCTCATATGAATGGAGTTGAAGAATGGATAACATCGAGCTGATGTTTCTCTCTGGCCCATGTTTCTACACCGTGCTGTGCAAAGTTACATCCCCTTGGTTGTGGTTAATATTCTCGAGTCGCGTAGTACTCTGAAATCTACACCCTTGTCTATTATCATCTAGGTTATGTTCATGTAGCATAAGAGTTGAGTTGAGTCGTCAGCAAAGAAATTTTGTTCTTTCTGTTTCATACTTATTTTTTTTTGGGGGGGGGGGGGGTGTCATCCGGTTTGCCCCCTTCTATGGTTCGGTCACCTTGAAAGGAGTAACGTTGAAACTATTTAGGTGTTCCATTGTGTAGTCTTGCTCCGTGATAGCTCGCAGGCACATCAGACTACTCACTATGAAAAAGAAAATAATGAGACGTGTGGGTTACATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG] [+] EMBL AK060154 [TCGAATCAAATCCATCTCTTTTCTCCCCTTCCTTCCTTCCGCCTCGCCTCCCCTTCCCCTCCTCGCCGCCTCGCTCCCCTCCGCCGCGCCGTCCCGTCGAATCCCGCCATGCCGAAGGGTGCCAAGAAGCGCGCCAAGCTCAAGAAGAAGCAGCAGGGGGACCACCCCGCCGGCTCCGATGACGGCGGCAACAACAACAACAACAAAAACAACGCCGCCGAAAACGGCAGCAATGACTCCAGCCGCCGCCGCGACGCCGCCAGCGACGGCAACCACCACCTACCGTCGCGACCAAACGTTCCTCATGTGGATGTGAGTGAGGACTCCATGGAGAGCTCCGAGGAGATGGTGACGCCGAGGGCCGCCGCGTCCGAGGCGGACGAGGAGGAGAGGAAGGCCGCCACG TCGGAGGTGCCCGTGGAGGTGG TCGAGGCCGGGGAGGAGG TCATGGTGGACGCCTTGCCGCCCGAAGCCGCCGCAGGTGCGCAGGAGCAACAGGGTAAGGCGGAGGCGCTTGTGGTGGTGCAGGAACCGGAGGTGAAGCGCGAGGAGTTGGTGGCCAAGGTGCATCCGATGCATGACCCGGAACCGCAGGGCGAGGAGGTGCTCATCGTGGAGGCGGCTGCGGTATCCGCGGTGCAAGAACCGGAGGTGAAGCGCGATGAGGTGGTGGTCATGGAGACGGCTGCGCCGCC TGCGGTGCAGGAATCGGAGACG AAGAGCGGTGGGGTGTTGGTCAAGGATGTGGTGGAGGTGTCACGGTCTCTGGGTGCAGCTGATACTACAGAGGTGGCCCGGGGACCTGCAGTGGCTGTGGCTGCAGCAGGGCAGCGGGCAACATGGTGGAATTGCTGTGGGGTATTTGATGCGTTCTCTGGTTCGGAGAGATAGATTAAGGTTGGAACTTGGAAGCCAAGAAGACAGTAGACGCGAAGTTGTTCAAAGCTGATGGTAATTGTAACTAGTCTGGTTTATGCTCATATGAATGGAGTTGAAGAATGGATAACATCGAGCTGATGTTTCTCTCTGGCCCATGTTTCTACACCGTGCTGTGCAAAGTTACATCCCCTTGGTTGTGGTTAATATTCTCGAGTCGCGTAGTACTCTGAAATCTACACCCTTGTCTATTATCATCTAGGTTATGTTCATGTAGCATAAGAGTTGAGTTGAGTCGTCAGCAAAGA ] [+] EMBL AK109495 [ AATCCATCTCTTTTCTCCCCTTCCTTCCTTCCGCCTCGCCTCCCCTTCCCCTCCTCGCCGCCTCGCTCCCCTCCGCCGCGCCGTCCCGTCGAATCCCGCCATGCCGAAGGGTGCCAAGAAGCGCGCCAAGCTCAAGAAGAAGCAGCAGGGGGACCACCCCGCCGGCTCCGATGACGGCGGCAACAACAACAACAACAAAAACAACGCCGCCGAAAACGGCAGCAATGACTCCAGCCGCCGCCGCGACGCCGCCAGCGACGGCAACCACCACCTACCGTCGCGACCAAACGTTCCTCATGTGGATGTGAGTGAGGACTCCATGGAGAGCTCCGAGGAGATGGTGACGCCGAGGGCCGCCGCGTCCGAGGCGGACGAGGAGGAGAGGAAGGCCGCCACG TCGGAGGTGCCCGTGGAGGTGG TCGAGGCCGGGGAGGAGG TCATGGTGGACGCCTTGCCGCCCGAAGCCGCCGCAGGTGCGCAGGAGCAACAGGGTAAGGCGGAGGCGCTTGTGGTGGTGCAGGAACCGGAGGTGAAGCGCGAGGAGTTGGTGGCCAAGGTGCATCCGATGCATGACCCGGAACCGCAGGGCGAGGAGGTGCTCATCGTGGAGGCGGCTGCGGTATCCGCGGTGCAAGAACCGGAGGTGAAGCGCGATGAGGTGGTGGTCATGGAGACGGCTGCGCCGCC TGCGGTGCAGGAATCGGAGACG AAGAGCGGTGGGGTGTTGGTCAAGGATGTGGTGGAGGTGTCACGGTCTCTGGGTGCAGCTGATACTACAGAGGTGGCCCGGGGACCTGCAGTGGCTGTGGCTGCAGCAGGGCAGCGGGCAACATGGTGGAATTGCTGTGGGGTATTTGATGCGTTCTCTGGTTCGGAGAGATAGATTAAGGTTGGAACTTGGAAGCCAAGAAGACAGTAGACGCGAAGTTGTTCAAAGCTGATGGTAATTGTAACTAGTCTGGTTTATGCTCATATGAATGGAGTTGAAGAATGGATAACATCGAGCTGATGTTTCTCTCTGGCCCATGTTTCTACACCGTGCTGTGCAAAGTTACATCCCCTTGGTTGTGGTTAATATTCTCGAGTCGCGTAGTACTCTGAAATCTACACCCTTGTCTATTATCATCTAGGTTATGTTCATGTAGCATAAGAGTTGAGTTGAGTCGTCAGCAAAGAAATTTTGTTCTTTCTGTTTCATACTTATTTTTTTTT GGGGGGGGGGGGGTGTCATCCGGTTTGCCCCCTTCTATGGTTCGGTCACCTTGAAAGGAGTAACGTTGAAACTATTTAGGTGTTCCATTGTGTAGTCTTGCTCCGTGATAGCTCGCAGGCACATCAGACTACTCACTATGAAAAAGAAAATAATGAGACGTGTG ] [+] EMBL AK100768 [ CTTCCTTCCGCCTCGCCTCCCCTTCCCCTCCTCGCCGCCTCGCTCCCCTCCGCCGCGCCGTCCCGTCGAATCCCGCCATGCCGAAGGGTGCCAAGAAGCGCGCCAAGCTCAAGAAGAAGCAGCAGGGGGACCACCCCGCCGGCTCCGATGACGGCGGCAACAACAACAACAACAAAAACAACGCCGCCGAAAACGGCAGCAATGACTCCAGCCGCCGCCGCGACGCCGCCAGCGACGGCAACCACCACCTACCGTCGCGACCAAACGTTCCTCATGTGGATGTGAGTGAGGACTCCATGGAGAGCTCCGAGGAGATGGTGACGCCGAGGGCCGCCGCGTCCGAGGCGGACGAGGAGGAGAGGAAGGCCGCCACG TCGGAGGTGCCCGTGGAGGTGG TCGAGGCCGGGGAGGAGG TCATGGTGGACGCCTTGCCGCCCGAAGCCGCCGCAGGTGCGCAGGAGCAACAGGGTAAGGCGGAGGCGCTTGTGGTGGTGCAGGAACCGGAGGTGAAGCGCGAGGAGTTGGTGGCCAAGGTGCATCCGATGCATGACCCGGAACCGCAGGGCGAGGAGGTGCTCATCGTGGAGGCGGCTGCGGTATCCGCGGTGCAAGAACCGGAGGTGAAGCGCGATGAGGTGGTGGTCATGGAGACGGCTGCGCCGCC TGCGGTGCAGGAATCGGAGACG AAGAGCGGTGGGGTGTTGGTCAAGGATGTGGTGGAGGTGTCACGGTCTCTGGGTGCAGCTGATACTACAGAGGTGGCCCGGGGACCTGCAGTGGCTGTGGCTGCAGCAGGGCAGCGGGCAACATGGTGGAATTGCTGTGGGGTATTTGATGCGTTCTCTGGTTCGGAGAGATAGATTAAGGTTGGAACTTGGAAGCCAAGAAGACAGTAGACGCGAAGTTGTTCAAAGCTGATGGTAATTGTAACTAGTCTGGTTTATGCTCATATGAATGGAGTTGAAGAATGGATAACATCGAGCTGATGTTTCTCTCTGGCCCATGTTTCTACACCGTGCTGTGCAAAGTTACATCCCCTTGGTTGTGGTTAATATTCTCGAGTCGCGTAGTACTCTGAAATCTACACCCTTGTCTATTATCATCTAGGTTATGTTCATGTAGCATAAGAGTTGAGTTGAGTCGTCAGCAAAGAAATTTTGTTCTTTCTGTTTCATACTTATTTTTTTTTGGGGGGGGGGGGGGTGTCATCCGGTTTGCCCCCTTCTATGGTTCGGTCACCTTGAAAGGAGTAACGTTGAAACTATTTAGGTGTTCCATTGTGTAGTCTTGCTCCGTGATAGCTCGCAGGCACATCAGACTACTCACTATGAAAAAGAAAATAATGAGACGTGTG ] [+] EMBL AU056277 [ TCCCCTCCTCGCCGCCTCGCTCCCCTCCGCCGCGCCGTCCCGTCGAATCCCGCCATGCCGAA GGTGCCAAGAAGCGCGCCAAGCTCAAGAAGAAGCAGCAGGGGGACCACCCCGCCGGCTCCGATGACGGCGGCAACAACAACAACAACAAAAACAACGCCGCCGAAAACGGCAGCAATGACTCCAGCCGCCGCCGCGACGCCGCCAGCGACGGCAACCACCACCTACCGTCGCGACCAAACGTTCCTCATGTGGATGTGAGTGAGGACTCCATGGAGAGCTCCGAGGAGATGGTGACGCCGAGGGCCGCCGCGTCCGAGGCGGACGAGGAGGAGAGGAAGGCCGCCACGTTCGGAGGTGCCCGTGGAGGTGGTTCGAGGCCGGGGAGGAGGTTCATGGTGGACGCCTTGCCGCCCGAAGCCGCCGCA GTGCGCAGGAGCAACAGGGTAAGGCGGAGGCGCTTGTGGTGGTGCAGGAACCGGAAGTGAAGCGCGAGGAGTTGGTGGCCAAGGTGCATCCGATGCATGACCCGGAACCGCAAGGCGAGGAGGTGCTCATCGTGGAGGCGG TGCGGTATCCGCGGTGCAAGAACCGGA GTGAAGCGCGATGAGGTTGTGGT ATGGAGACGGNTGCGCCGCCTTGCGGTTCAGGAAT GGAGACGAAAAAGCGGTGGGGTGTTGGTCAAGGATGTTGT ] [+] EMBL CB678328 [ TCGCTCCCTTCCGCCGCGCCGTCCCGTCGAATCCCGCCATGCCGAAGGGTGCCAAGAAGCGCGCCAAGCTCAAGAAGAAGCAGCAGGGGGACCACCCCGCCGGCTCCGATGACGGCGGCAACAACAACAACAACAAAAACAACGCCGCCGAAAACGGCAGCAATGACTCCAGCCGCCGCCGCGACGCCGCCAGCGACGGCAACCACCACCTACCGTCGCGACCAAACGTTCCTCATGTGGATGTGAGTGAGGACTCCATGGAGAGCTCCGAGGAGATGGTGACGCCGAGGGCCGCCGCGTCCGAGGCGGACGAGGAGGAGAGGAAGGCCGCCACG TCGGAGGTGCCCGTGGAGGTGG TCGAGGCCGGGGAGGAGG TCATGGTGGACGCCTTGCCGCCCGAAGCCGCCGCAGGTGCGCAGGAGCAACAGGGTAAGGCGGAGGCGCTTGTGGTGGTGCAGGAACCGGAGGTGAAGCGCGAGGAGTTGGTGGCCAAGGTGCATCCGATGCATGACCCGGAACCGCAGGGCGAGGAGGTGCTCATCGTGGAGGCGGCTGCGGTATCCGCGGTGCAAGAACCGGAGGTGAAGCGCGATGAGGTGGTGGTCATGGAGACGGCTGCGCCGCC TGCGGTGCAGGAATCGGAGACG AAGAGCGGTGGGGTGTTGGTCAAGGATGTGGTGGAGGTGTCACGGTCTCTGGGTGCAG ] [+] EMBL AU056571 [ AGGAGATNGTGACNCCGAGGGCCGCCGCGTCCGANGCGGACGAGGAGGAGAGGAAGGCCGCCACG TCGGAGGTNCCCGTGGAGGTGG TCGANGCCGGGGAGGAGG TCATGGTGGACNCCTTGCCGCCCGAAGCCGCCGCAGGTNCGCAGGAGCAACANGGTAAGGCGGAGGCGCTTGTNGTGGTGCAGGAACCGGAGGTGAAGCGCGANGAGTTGGTNGCCAAGGTGCATCCGATGCATNACCCGGAACCGCANGGCGAGGAGGTGCTCATCGTGGAGGCGGCTGCGGTATCCGCGGTGCAAGAACCGGAGGTNAAGCGCGATNAGG ] [-] EMBL CB678329 [ GTGGAGGTGTCACGGTTTCTGGGTGCAGCTGATACTACAGAGGTGGCCCGGGGCCCTGCAGTGGCTGTGGCTGCAGCAGGGCAGCGGGCAACATGGTGGAATTGCTGTGGGGTATTTGATGCGTTCTCTGGTTCGGAGAGATAGATTAAGGTTGGAACTTGGAAGCCAAGAAGCCAGTAGACGCGAAGTTGTTCAAAGCTGACGGTAATTGTAACTAGTTTGGTTTATGCTCATATGAATGGAGTTGAAGAATGGATAACATCGAGCTGATGTTTTTTTTTGGCCCATGTTTTTACCCCGTGCTGGGCAAAGTTCCATCCCCCTGGTTGTGGTTAATATTCTCGAGTCGCGTAGTACTCTGAAATCTACCCCCTTGTCTATTATCATTTAGGTTAAGTTCATGTAGCATAAGAGTTGAGTTGAGTCTTCAGCAAAGAAATTTTGTTCTTTCTGTTTCATACTTATTTTTTTTTGGGGGGGGGGGGGGTGTCATCCGGTTTGCCCCCTTTTATGGTTCGGTCCCCTTGAAAGGAGTAACGTGGAAACTATTTAGGTGTTCCATTGTGTAGTCTTGCTCCGTGATAGCTCCCAGGCACATCAGACTACTCACTATGAAAAAGAAAATAAGGGGACGTGTGGGTTCCCTTC ] [+] EMBL AU056278 [ CAGTAGACGCGAAGTTGTTCAAAGCTGATGGTAATTGTAACTAGTCTGGTTTATGCTCATATGAATGGAGTTGAAGAATGGATAACATCGAGCTGATGTTTCTCTCTGGCCCATGTTTCTACNCCGTGCTGTGCAAAGTTACATCCCCTTGGTTGTGGTTAATATTCTCGAGTCGCGTAGTACTCTGAAATCTACNCCCTTGTCTATTATCATCTAGGTTATGTTCATGTAGCATAAGAGTTGAGTTGAGTCGTCAGCAAAGAAATTTTGTTCTTTCTGTTTCATACTTATTTTTTTTTGGGGGGGGGGGGGGTGTCATCCGGTTTGCCCCCTTCTATGGTTCGGTCACCTTGAAAGGAGTAACGTTGAAACTATTTAGGTGTTCCATTGTGTAGTCTTGCTCCGTGATAGCTCGCAGGCACATCAGACTACTCACTATGAAAAAGAAAATAATGAGACGTGTGGGTTACATTCAAAAAAAAAAAA ] [+] EMBL CF314718 [ ctgAAGGAGTAACGTTGAAACTATTTAGGTGTTCCATTGTGTAGTCTTGCTCCGTGATAGCTCGCAGGCACATCAGACTACTCACTATGAAAAAGAAAATAATGAGACGTGTGGGTTACATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG] consensusID : consensus_13499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1331 fasta sequence [GCCTCCCCTTCCCCTCCTCGCCGCCTCGCTCCCCTCCGCCGCGCCGTCCCGTCGAATCCCGCCATGCCGAAGGGTGCCAAGAAGCGCGCCAAGCTCAAGAAGAAGCAGCAGGGGGACCACCCCGCCGGCTCCGATGACGGCGGCAACAACAACAACAACAAAAACAACGCCGCCGAAAACGGCAGCAATGACTCCAGCCGCCGCCGCGACGCCGCCAGCGACGGCAACCACCACCTACCGTCGCGACCAAACGTTCCTCATGTGGATGTGAGTGAGGACTCCATGGAGAGCTCCGAGGAGATGGTGACGCCGAGGGCCGCCGCGTCCGAGGCGGACGAGGAGGAGAGGAAGGCCGCCACGTCGGAGGTGCCCGTGGAGGTGGTCGAGGCCGGGGAGGAGGTCATGGTGGACGCCTTGCCGCCCGAAGCCGCCGCAGGTGCGCAGGAGCAACAGGGTAAGGCGGAGGCGCTTGTGGTGGTGCAGGAACCGGAGGTGAAGCGCGAGGAGTTGGTGGCCAAGGTGCATCCGATGCATGACCCGGAACCGCAGGGCGAGGAGGTGCTCATCGTGGAGTTCAACGGTCGTCTCCTGATCTACCTCTTGAGCGCCGATGCCCCCGACCACCATGTCCTCTCCTCGCGCAGCACGGTCGCTACCGGCCGCCGCCGCCTCCTGTCCTGCTTGAGCGCAGACACCGCCGGCCGCTGGCCGCCGACTCCACGCCCTCCCTCTCCCCCCAAGCCCCACTCTGGCCATCTCCTCGGCCAGATCCAGCGCCGCGGAGGTTGGGGACGCCGGATCTGATGCCCAAGGGCGGCAGCGGGAGGCCTCCCCGAGCTTGCGAGGGGGCTGCCGCTGAGGTGGCCACGGTGACGAGCTCAGTAGTGGTAGTGTCGTCTTCGGGGCTTCGGCGACGTTGCTCTCTCACCAACCACAGCCTGCAGGTATCAGTGGAGGTCCTCTAAAAAAATCTCAGTGGAAGAGATCCGGTTGTGGAAATTTATATCTCATGGCACTAATGGCACTACAGCATGGCACAAATTAATATCTATGAAATGTCCCGTTAGACCTGAAGTTTTGTGGCAATACATGGAGGGTGTTATCTTGCTGATGTGTATTTTACATGTCATTTAGCCGATGAAATTTGTTCAGAAATCAGGAATTTATTTCTGACACGAGCAGGCAAAATATGGATGAGGGCTGGAATCAGTATGTATTTTGTAGACATATATAATGGAGTATTTCGTTGTAGCTGAAATATGTAAATTTGATGGAATCATTATGTAACATGTCAAAATTTTCCACACTATCATTAATACTTGGGAAGTTTC] [+] EMBL AK108061 [GCCTCCCCTTCCCCTCCTCGCCGCCTCGCTCCCCTCCGCCGCGCCGTCCCGTCGAATCCCGCCATGCCGAAGGGTGCCAAGAAGCGCGCCAAGCTCAAGAAGAAGCAGCAGGGGGACCACCCCGCCGGCTCCGATGACGGCGGCAACAACAACAACAACAAAAACAACGCCGCCGAAAACGGCAGCAATGACTCCAGCCGCCGCCGCGACGCCGCCAGCGACGGCAACCACCACCTACCGTCGCGACCAAACGTTCCTCATGTGGATGTGAGTGAGGACTCCATGGAGAGCTCCGAGGAGATGGTGACGCCGAGGGCCGCCGCGTCCGAGGCGGACGAGGAGGAGAGGAAGGCCGCCACGTCGGAGGTGCCCGTGGAGGTGGTCGAGGCCGGGGAGGAGGTCATGGTGGACGCCTTGCCGCCCGAAGCCGCCGCAGGTGCGCAGGAGCAACAGGGTAAGGCGGAGGCGCTTGTGGTGGTGCAGGAACCGGAGGTGAAGCGCGAGGAGTTGGTGGCCAAGGTGCATCCGATGCATGACCCGGAACCGCAGGGCGAGGAGGTGCTCATCGTGGAGTTCAACGGTCGTCTCCTGATCTACCTCTTGAGCGCCGATGCCCCCGACCACCATGTCCTCTCCTCGCGCAGCACGGTCGCTACCGGCCGCCGCCGCCTCCTGTCCTGCTTGAGCGCAGACACCGCCGGCCGCTGGCCGCCGACTCCACGCCCTCCCTCTCCCCCCAAGCCCCACTCTGGCCATCTCCTCGGCCAGATCCAGCGCCGCGGAGGTTGGGGACGCCGGATCTGATGCCCAAGGGCGGCAGCGGGAGGCCTCCCCGAGCTTGCGAGGGGGCTGCCGCTGAGGTGGCCACGGTGACGAGCTCAGTAGTGGTAGTGTCGTCTTCGGGGCTTCGGCGACGTTGCTCTCTCACCAACCACAGCCTGCAGGTATCAGTGGAGGTCCTCTAAAAAAATCTCAGTGGAAGAGATCCGGTTGTGGAAATTTATATCTCATGGCACTAATGGCACTACAGCATGGCACAAATTAATATCTATGAAATGTCCCGTTAGACCTGAAGTTTTGTGGCAATACATGGAGGGTGTTATCTTGCTGATGTGTATTTTACATGTCATTTAGCCGATGAAATTTGTTCAGAAATCAGGAATTTATTTCTGACACGAGCAGGCAAAATATGGATGAGGGCTGGAATCAGTATGTATTTTGTAGACATATATAATGGAGTATTTCGTTGTAGCTGAAATATGTAAATTTGATGGAATCATTATGTAACATGTCAAAATTTTCCACACTATCATTAATACTTGGGAAGTTTC] consensusID : consensus_13499#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence [CTTCCTCGCGCTCGTCACGCCGCCTCCCCTTCCCCTCTCCCGACAACCACCGCTCCCTCCAGTGCGCCGTCGACCACCGCTCATTCGTGGAGTTCAACGGCCGTCTCCTGATCTACCTCTTGAGCGCCGATGCCCCCGACCACCATGTCCTCTCCTCGCGCAGCACGGTCGCTACCGGCCGCCGCCGCCTCCTGTCCTGCTTGAGCGCAGACACCGCCGGCCGCTGGCCGCCGACTCCACGCCCTCCCTCTCCCCCCAAGCCCCACTCTGGCCATCTCCTCGGCCAGATCCAGCGCCGCGGAGGTTGGGGACGCCGGATCTGATGCCCAAGGGCGGCAGCGGGAGGCCTCCCCGAGCTTGCGAGGGGGCTGCCGCTGAGGTGGCCACGGTGACGAGCTCAGTAGTGGTAGTGTCGTCTTCGGGGCTTCGGCGACGTTGCTCTCTCACCAACCACAGCCTGCAGGTGCTCAGGTTCTCCACCATGTATATCATATTCGCAGAACTTGAATAGATATATGTTGACAAAATTTCGGTTAATGAAAATTGTGGATGAGATATAACCCGGAGTATGTGCCTTGAAAATGTACTCTTTGGCTTATTAGCTCTATTTAGAGTGTAATTCTATAATGCAAGTTCATCTAGCTAGTACTTTGTAGTTTTATATTGATACACTAAAAATTAGATAGAGAAAACTGAAACTTAGTAAGTTTAATAGCAAGAACTCAAGATGCTGTGATGCTAACTATCANATGCTAATAGAGGAAAGCCACTGGCGTGTTTATATTTTGTTGGAATTTATTATCATGAAATGGCCTGCTAGAANGG] [+] EMBL CB658986 [CTTCCTCGCGCTCGTCACGCCGCCTCCCCTTCCCCTCTCCCGACAACCACCGCTCCCTCCAGTGCGCCGTCGACCACCGCTCATTCGTGGAGTTCAACGGCCGTCTCCTGATCTACCTCTTGAGCGCCGATGCCCCCGACCACCATGTCCTCTCCTCGCGCAGCACGGTCGCTACCGGCCGCCGCCGCCTCCTGTCCTGCTTGAGCGCAGACACCGCCGGCCGCTGGCCGCCGACTCCACGCCCTCCCTCTCCCCCCAAGCCCCACTCTGGCCATCTCCTCGGCCAGATCCAGCGCCGCGGAGGTTGGGGACGCCGGATCTGATGCCCAAGGGCGGCAGCGGGAGGCCTCCCCGAGCTTGCGAGGGGGCTGCCGCTGAGGTGGCCACGGTGACGAGCTCAGTAGTGGTAGTGTCGTCTTCGGGGCTTCGGCGACGTTGCTCTCTCACCAACCACAGCCTGCAGGTGCTCAGGTTCTCCACCATGTATATCATATTCGCAGAACTTGAATAGATATATGTTGACAAAATTTCGGTTAATGAAAATTGTGGATGAGATATAACCCGGAGTATGTGCCTTGAAAATGTACTCTTTGGCTTATTAGCTCTATTTAGAGTGTAATTCTATAATGCAAGTTCATCTAGCTAGTACTTTGTAGTTTTATATTGATACACTAAAAATTAGATAGAGAAAACTGAAACTTAGTAAGTTTAATAGCAAGAACTCAAGATGCTGTGATGCTAACTATCANATGCTAATAGAGGAAAGCCACTGGCGTGTTTATATTTTGTTGGAATTTATTATCATGAAATGGCCTGCTAGAANGG] consensusID : consensus_13499#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [AATTTTGACCTGTTACATAATGATTCCATCAAATTTACATATTTCAGCTACAACGAAATACTCCATTATATATGTCTACAAAATACATACTGATTCCAGCCCTCATCCATATTTTGCCTGCTCGTGTCAAAAATAAATTCCTGATTTCTGAACAAATTTCATCGGCTAAATGACATGTAAAATACACATCAGCAAGATAACACCCTCCATGTATTGCCACAAAACTTCAGGTCTAACGGGACATTTCATAAATATTAATTTGTGCCATGCTGTAGTGCCATTAGTGCCATGAAATATAAATTTCCACAACCGGATCTCTTCCACTGAGATTTTTTTAGAGGACCTCCACTGATACCTGACAGTTAGAAACACAACATCTTGAGCTCTTGGGAAACAAACTTAGTAAGCTTCAGTTTTCAGTAAACTCTGGTACATCACTATATGATTATAAGGCACCAATTGCATGAAAAGGACTCGCAAAAAACTGCACATAAACAAAATGTTTAGTAAAATGGCATCGG] [+] EMBL CB658987 [AATTTTGACCTGTTACATAATGATTCCATCAAATTTACATATTTCAGCTACAACGAAATACTCCATTATATATGTCTACAAAATACATACTGATTCCAGCCCTCATCCATATTTTGCCTGCTCGTGTCAAAAATAAATTCCTGATTTCTGAACAAATTTCATCGGCTAAATGACATGTAAAATACACATCAGCAAGATAACACCCTCCATGTATTGCCACAAAACTTCAGGTCTAACGGGACATTTCATAAATATTAATTTGTGCCATGCTGTAGTGCCATTAGTGCCATGAAATATAAATTTCCACAACCGGATCTCTTCCACTGAGATTTTTTTAGAGGACCTCCACTGATACCTGACAGTTAGAAACACAACATCTTGAGCTCTTGGGAAACAAACTTAGTAAGCTTCAGTTTTCAGTAAACTCTGGTACATCACTATATGATTATAAGGCACCAATTGCATGAAAAGGACTCGCAAAAAACTGCACATAAACAAAATGTTTAGTAAAATGGCATCGG] consensusID : consensus_13499#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [TTATTTCTTCTCCACATAGAGCACACAATATGATGTGCAACATGTAGAGCCCGCTTACATCATCTTATTATCTTTGCTCTAATGGGACATGATGTTTATTTACTATTTTGGTTTCGTAGTATTTATTACTGAGAATAACATGTACTTCTAATCTTCTATGTTGTCTTAAAAGTTCTCTTGTTTTTCCCACATACCACGGTTGGAACTTGGAAGCCCAGAAGACAGTAGACGCGAAGTTGTTCAAGCTGATGGTAATTGTAACTAGTCTGGTTTATGCTCATATGAATGGAGTTGAAGAATGGATAACATCGAGCTGATGTTTCTCTCTGGCCCATGTTTCTACACCCGTGCTGTGCCAAGTTACATCCCCTTGGTTGTGGTTAATATTCTTGAGTCGCGTAGTACTCTGAAATCTACACCCTTGTCTATTATCATCTAGGTTATGTTCATGTAGCATAAGAGTTGAGTTGAGTCGTCAGCAAGAAATTTTGTTCTTTCTGTTTCATACTTAAAAAAAAA] [+] EMBL BM418601 [TTATTTCTTCTCCACATAGAGCACACAATATGATGTGCAACATGTAGAGCCCGCTTACATCATCTTATTATCTTTGCTCTAATGGGACATGATGTTTATTTACTATTTTGGTTTCGTAGTATTTATTACTGAGAATAACATGTACTTCTAATCTTCTATGTTGTCTTAAAAGTTCTCTTGTTTTTCCCACATACCACGGTTGGAACTTGGAAGCCCAGAAGACAGTAGACGCGAAGTTGTTCAAGCTGATGGTAATTGTAACTAGTCTGGTTTATGCTCATATGAATGGAGTTGAAGAATGGATAACATCGAGCTGATGTTTCTCTCTGGCCCATGTTTCTACACCCGTGCTGTGCCAAGTTACATCCCCTTGGTTGTGGTTAATATTCTTGAGTCGCGTAGTACTCTGAAATCTACACCCTTGTCTATTATCATCTAGGTTATGTTCATGTAGCATAAGAGTTGAGTTGAGTCGTCAGCAAGAAATTTTGTTCTTTCTGTTTCATACTTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13499#0 TCGAATCAAATCCATCTCTTTTCTCCCCTTCCTTCCTTCCGCCTCGCCTCCCCTTCCCCT 60 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 ---------------------------------------------GCCTCCCCTTCCCCT 15 consensus_13499#2 ------------------------------------------------------------ consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 CCTCGCCGCCTCGCTCCCCTCCGCCGCGCCGTCCCGTCGAATCCCGCCATGCCGAAGGGT 120 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 CCTCGCCGCCTCGCTCCCCTCCGCCGCGCCGTCCCGTCGAATCCCGCCATGCCGAAGGGT 75 consensus_13499#2 ------------------------------------------------------------ consensus_13499#3 ------AATTTTGACCTGTTACATAATG--ATTCCATCAAATTTACATATTTCAGCTACA 52 consensus_13499#0 GCCAAGAAGCGCGCCAAGCTCAAGAAGAAGCAGCAGGGGGACCACCCCGCCGGCTCCGAT 180 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 GCCAAGAAGCGCGCCAAGCTCAAGAAGAAGCAGCAGGGGGACCACCCCGCCGGCTCCGAT 135 consensus_13499#2 ------------------------------------------------------------ consensus_13499#3 ACGAAATACTCCATTATATATGTCTACAAAATACATACTGATTCCAGCCCTCATCCATAT 112 consensus_13499#0 GACGGCGGCAACAACAACAACAACAAAAACAACGCCGCCGAAAACGGCAGCAATGACTCC 240 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 GACGGCGGCAACAACAACAACAACAAAAACAACGCCGCCGAAAACGGCAGCAATGACTCC 195 consensus_13499#2 ------------------------------------------------------------ consensus_13499#3 TTTGCCTGC--TCGTGTCAAAAATAAATTCCTGATTTCTGAACA-AATTTCATCGGCTA- 168 consensus_13499#0 AGCCGCCGCCGCGACGC-CGCCAGCGACGGCAACCACCACCTACCGTCGCGACCAAACGT 299 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 AGCCGCCGCCGCGACGC-CGCCAGCGACGGCAACCACCACCTACCGTCGCGACCAAACGT 254 consensus_13499#2 ------------------------------------------------------------ consensus_13499#3 AATGACATGTAAAATACACATCAGCAA-GATAACACCCTCCATGTATTGCCACAAAACTT 227 consensus_13499#0 TCCTCATGTGGATGTGAGTGAGGACTCCATGGAGAGCTCCGAGGAGATGGTGACGCCGAG 359 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 TCCTCATGTGGATGTGAGTGAGGACTCCATGGAGAGCTCCGAGGAGATGGTGACGCCGAG 314 consensus_13499#2 ------------------------------------------------------------ consensus_13499#3 C--------AGGTCTAACGGGACATTTCATAAATATT-------AATTTGTGCCAT---- 268 consensus_13499#0 GGCCGCCGCGTCCGAGGCGGACGAGGAGGAGAGGAAGGCCGCCACGTCGGAGGTGC-CCG 418 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 GGCCGCCGCGTCCGAGGCGGACGAGGAGGAGAGGAAGGCCGCCACGTCGGAGGTGC-CCG 373 consensus_13499#2 ------------------------------------------------------------ consensus_13499#3 -GCTGTAGTGCCATTAGTG--CCATGAAATATAAATTTCCACAAC--CGGATCTCTTCCA 323 consensus_13499#0 TGGAGGTGGTCGAGGCCGGGGAGGAGGTCATGGTGGACGCCTTGCCGCCCGAAGCC--GC 476 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 TGGAGGTGGTCGAGGCCGGGGAGGAGGTCATGGTGGACGCCTTGCCGCCCGAAGCC--GC 431 consensus_13499#2 ------------------------------------------------------------ consensus_13499#3 CTGAGATTTTTTT--------AGAGGACCTCCACTGATACCTGACAGTTAGAAACACAAC 375 consensus_13499#0 CGCAGGTGCGCAGGAGCAACAGGGTAAGGCGGAGGCGCTTGTGGTGGTGCAGGAACCGGA 536 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 CGCAGGTGCGCAGGAGCAACAGGGTAAGGCGGAGGCGCTTGTGGTGGTGCAGGAACCGGA 491 consensus_13499#2 ----------------------------------------------------CTTCCTCG 8 consensus_13499#3 ATCTTGAGCTCTTGGGAAACAAACTTAGTAAGCTTCAGTTTT-------CAGTAAACTCT 428 consensus_13499#0 GGTGAAGCGCGAGGAGTTGGTGGCCAAGGTGCATCCGATGCATGACCCGGAACCGCAGGG 596 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 GGTGAAGCGCGAGGAGTTGGTGGCCAAGGTGCATCCGATGCATGACCCGGAACCGCAGGG 551 consensus_13499#2 CGCTCGTCACGCCGCCTCCCCTTCCCCTCTCCCGACAAC-CACCGCTCCCTCCAGTGCGC 67 consensus_13499#3 GGTACATCAC------TATATGATTATAAGGCACCAATTGCATGAAAAGGACTCGCA--- 479 consensus_13499#0 CGAGGA--GGTGCTCAT-CGTGGAGGCGGCTGCGGTATCCGCGGTGCAAGAACCGGAGGT 653 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 CGAGGA--GGTGCTCAT-CGTGGAGTTCAACGGTCGTCTCCTGATCTACCTCTTGAGCGC 608 consensus_13499#2 CGTCGACCACCGCTCATTCGTGGAGTTCAACGGCCGTCTCCTGATCTACCTCTTGAGCGC 127 consensus_13499#3 --AAAAACTGCACATAAACAAAATGTTTAGTAAAATGGCATCGG---------------- 521 consensus_13499#0 GAAGCGCGATGAGGTGGTGGTCATGGAGACGGCTGCGCCGCCTGCGGTGCAGGAATCGGA 713 consensus_13499#4 --------------------------------TTATTTCTTCTCCACATAGAGCACACAA 28 consensus_13499#1 CGATGCCCCCGACCACCATGTCCTCTCCTCG--CGCAGCACGGTCGCTACCGGCCGCCGC 666 consensus_13499#2 CGATGCCCCCGACCACCATGTCCTCTCCTCG--CGCAGCACGGTCGCTACCGGCCGCCGC 185 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 GACGAAGAGCGGTGGGGTGTTGGTCAAGGATGTGGTGGAGGTGTCACGGTCTCTGGGTGC 773 consensus_13499#4 TATGATGTGCAACATG-TAGAGCCCGCTTACATCATCTTATTATCTTTG-CTCTAATGGG 86 consensus_13499#1 CGCCTCCTGTCCTGCT-TGAGCGCAGACACCGCCGGCCGCTGGCCGCCGACTCCACGCCC 725 consensus_13499#2 CGCCTCCTGTCCTGCT-TGAGCGCAGACACCGCCGGCCGCTGGCCGCCGACTCCACGCCC 244 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 AGCTGATACTACAGAGGT--GGCCCGGGGACCTGCAGTGGCTGTGGCTGCAGCAGGGCAG 831 consensus_13499#4 ACATGATGTTTATTTACT--ATTTTGGT--TTCGTAGTATTTATTACTG----AGAATAA 138 consensus_13499#1 TCCCTCTCCCCCCAAGCCCCACTCTGGCCATCTCCTCGGCCAGATCCAGCGCCGCGGAGG 785 consensus_13499#2 TCCCTCTCCCCCCAAGCCCCACTCTGGCCATCTCCTCGGCCAGATCCAGCGCCGCGGAGG 304 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 CGGGCAACAT-GGTGGAATTGCTGTGGGGTATT--TGATGCGTTCTCTGGTTCGGAGAGA 888 consensus_13499#4 C-----ATGT-ACTTCTAATCTTCTATGTTGTC--TTAAAAGTTCTCTTGTTTTTCCC-A 189 consensus_13499#1 TTGGGGACGCCGGATCTGATGCCCAAGGGCGGCAGCGGGAGGCCTCCCCGAGCTTGCGAG 845 consensus_13499#2 TTGGGGACGCCGGATCTGATGCCCAAGGGCGGCAGCGGGAGGCCTCCCCGAGCTTGCGAG 364 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 TAGATTAAGGTTGGAACTTGGAAGCCAAGAAGA-CAGTAGACGCGAAGTTGT--TCAAAG 945 consensus_13499#4 CATACCACGGTTGGAACTTGGAAGCCCAGAAGA-CAGTAGACGCGAAGTTGT--TCAA-G 245 consensus_13499#1 GGGGCTGCCGCTGAGGTGGCCACGGTGACGAGCTCAGTAGTGGTAGTGTCGTCTTCGGGG 905 consensus_13499#2 GGGGCTGCCGCTGAGGTGGCCACGGTGACGAGCTCAGTAGTGGTAGTGTCGTCTTCGGGG 424 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 CT--GATGGTAATTGTAACTAGTCTGGTTTA---TGCTCATATGAATGGAGTTGAAGAAT 1000 consensus_13499#4 CT--GATGGTAATTGTAACTAGTCTGGTTTA---TGCTCATATGAATGGAGTTGAAGAAT 300 consensus_13499#1 CTTCGGCGACGTTGCTCTCTCACCAACCACAGCCTGCAGGTATCAGTGGAGGTCCTCTAA 965 consensus_13499#2 CTTCGGCGACGTTGCTCTCTCACCAACCACAGCCTGCAGGTGCTCA-GGTTCTCCACCAT 483 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 GGATAACATCGAGCTGATGTTTCTCTCTGGCCCATGTTTCTACACC-GTGCTGTGCAAAG 1059 consensus_13499#4 GGATAACATCGAGCTGATGTTTCTCTCTGGCCCATGTTTCTACACCCGTGCTGTGCCAAG 360 consensus_13499#1 AAAAATCTC--AGTGGAAGAGATCCGGTTGTGGAAATTTATATCTC-ATGGCACTAATGG 1022 consensus_13499#2 GTATATCAT--ATTCGCAGAACTTGAAT-----AGATATATGT-TG-ACAAAATTTCGGT 534 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 TTACATCCCCTTGGTTGTGGTTAATATTCTCGAGTCGCGTAGTACTCTGAAATCTACACC 1119 consensus_13499#4 TTACATCCCCTTGGTTGTGGTTAATATTCTTGAGTCGCGTAGTACTCTGAAATCTACACC 420 consensus_13499#1 CACTACAGCATG-GCACAAATTAATATCTATGAAATGTCC----CGTTAGACCTGAAGTT 1077 consensus_13499#2 TAATGAAAATTGTGGATGAGATATAACCCGGAGTATGTGC----CTTGAAAATGTACTCT 590 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 CTTGTCTATTA---TCATCTAGGTTATGTTCATGTAGCATAAGAGTTGAGTTGAGTCGTC 1176 consensus_13499#4 CTTGTCTATTA---TCATCTAGGTTATGTTCATGTAGCATAAGAGTTGAGTTGAGTCGTC 477 consensus_13499#1 TTGTGGCAATA----CATGGAGGGTGTTATCTTGCTG-ATGTGTATTTTACATGTCATTT 1132 consensus_13499#2 TTGGCTTATTAGCTCTATTTAGAGTGTAATTCTA-TA-ATGCAAGTTCATCTAGCTAGTA 648 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 AGCAAAGAAATTTTGTT----CTTTCTGTTTCATACTTATTTTTTTTTGGGGGGGGGGGG 1232 consensus_13499#4 AGCAA-GAAATTTTGTT----CTTTCTGTTTCATACTTAAAAAAAAA------------- 519 consensus_13499#1 AGCCGATGAAATTTGTTCAGAAATCAGGAATTTATTTCTGACACGAGCAGGCAAAATATG 1192 consensus_13499#2 CTTTGTAGTTTTATATTGATACACTAAAAATTAGATAGAGAAAACTG-AAACTTAGTAAG 707 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 GGTGTCATCCGGTTTGCCCCCTTCTATGGTTCGGTCACCTTGAAAGGAGTAACGTTGAAA 1292 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 GATGAGGGCTGGAA-TCAGTATG-TATTTTGTAGACATATATAATGGAGTATTTCGTTGT 1250 consensus_13499#2 TTTAATAGCAAGAACTCAAGATGCTGTGATGCTAACTATCANATGCTAATAGAGGAAAGC 767 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 CTATTTAGGTGTTCCATTGTGTAGTCTTGCTCCGTGATAGCTCGCAGGCACATCAGACTA 1352 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 AGCTGAAATATGTAAATTT-GATGGAATCATTATGTAACATGTCAAAATTTTCCACACTA 1309 consensus_13499#2 CACTGGCGTGTTTATATTTTGTTGGAAT--TTAT-TATCATGAAATGGCCTGCTAGAANG 824 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 CTCACTATGAAAAAGAAAATAATGAGACGTGTGGGTTACATTCAAAAAAAAAAAAAAAAA 1412 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 TCATTAATACTTGGGAAGTTTC-------------------------------------- 1331 consensus_13499#2 G----------------------------------------------------------- 825 consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCT 1472 consensus_13499#4 ------------------------------------------------------------ consensus_13499#1 ------------------------------------------------------------ consensus_13499#2 ------------------------------------------------------------ consensus_13499#3 ------------------------------------------------------------ consensus_13499#0 TGCCG 1477 consensus_13499#4 ----- consensus_13499#1 ----- consensus_13499#2 ----- consensus_13499#3 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||