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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2379 fasta sequence
[AACCCTACCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGCCTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGGGGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCGAATCCTCTCCCAAAAAACCGAGCAGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGGAGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGATCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTCGTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCGCAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAAGCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAAAATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCCTATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGAAACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGATTAATGAGCTATCACTTCTTGAAGTACATTTTTTTGACCATGGGTTGCTTTTGGCACCACAGTCTGGAGAGCCACATGATGCTCGTGTGTACAAGCTTGAGACTGATGCATGTTACCACAAGCCTGAGGCATCAAGTGATAAGAAGAAAGATAAATTGAAGAAATCAGTAGTGCCAGTAACCAAGTTATCTTCCCCTGAGAATGAAGAGCAGACATCGGATCCTCTTGGTAGAGCTACTGTTGCGTCTGTCCTTTGGGAGTCCATCCAGGCACGCACAAAGTTAATTGAAATCCAGATTGTTAAGGGACTGTTTTGCAAAGATTCGGAACACGCTGAAGGTGTTGGACTCTTCATGGCC-GTTAAAAGGCCTAAAGAACTTGGGATAAGGAAATTGGATGTGGTCACTGACAATGAAGCAAACTACAATGTTATGATCGGCAAAAGGGATTTGAGCAAGAGTAGCAGTCCTGAAACCTCGATGGCATTTATCCAAGCTGCGAAGGAATACGACATCTGCAAGTGCAGGAGAGAGCCAAGGGAAATGATAAGCCATGTGAATGACCTCGCCAAGGAAGCACACACCAAAAGCACTGACATGTTGGATCTTAGAGAGATCATTGAGCGCAAGTCTCCTCAATTTTGGGGAATGCCATTTGTGCGCATCAAGCAAGATGATTCTTCTATAAAAGCAAAATTAGGAGACTCGAAGGTCAGCGACACACCTTTTGAAGCAACTAATTATTACATGGAGGTCTGGAGCAAGGCTCAGAAAAATGATGCTTTTGAAGGGCTATTGCGTGACCTTGATCCTGACTTTGTGATAGTATTTGCAAATGATGTCTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGAATCTGGAGCCAATGTTTCCCAGCATTCTATTCC-TGACCA--C-AGAGCACACGTACTTAT-CAATCACA-AGGGTTGCA-TTCCGC-ATTTTACCGGTAGCAAGTGCTTG-ATCGTTGCTTATGAC-AGTCCACCAGAGTTGATCCAG-TA-TGAAAACAATC-AAGATTC-TT--CAGGAGT-TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA-CTG-ACA-C-AACC-AAAGAAGTGGACCCATTCCTTTCT-TTATTTTTCCATCACCCTGGCCGCA-AAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAAAAAATAGAGCAAGATTTGAGCTTT-AAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTTTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAG-AGGAACAGGAACTGTAAGATGTAGACAGGCAGTAAAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACA-CCTTGGGAAATATCATGCACTTGTTACAGGCTCATTGACCTTTCACCTGATTGTGTATTCTGGCGCGAAGTATTTTGGGCCTCCGATTTTGTCGAGACTTAATGCATCCGTTTTGGGGTGGCCT]
[+] EMBL CB625988 [AACCCTCCCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGCCTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGGGGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCGAATCCTCTCCCAAAAAACCGAGCAGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGGAGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGATCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTCGTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCGCAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAAGCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAAAATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCCTATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGATACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGATTAATGAGCTATCACTTCTTGAAGTACATTTTTTTGACCATG ]
[+] EMBL CB625964 [AACCCTAGCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGCCTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGGGGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCGAATCCTCTCCCAAAAAACCGAGCAGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGGAGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGATCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTCGTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCGCAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAAGCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAAAATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCCTATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGAAACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGATTAATGAGCTATCACTTCTTGNAGTACATTTTTTTGACCAT ]
[+] EMBL CB625963 [AACCCTACCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGCCTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGGGGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCGAATCCTCTCCCAAAAAACCGAGCAGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGGAGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGATCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTCGTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCGCAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAAGCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAAAATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCCTATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGATACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGAT ]
[+] EMBL CB628197 [ agCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGCCTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGGGGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCGAATCCTCTCCCAAAAAACCG AGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGGAGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGATCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTCGTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCGCAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAAGCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAAAATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCCTATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGAAACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGATTAATGAGCTATCACTTCTTGAAGTACA ]
[+] EMBL CF196880 [ CACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGAAACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGATTAATGAGCTATCACTTCTTGAAGTACATTTTTTTGACCATGGGTTGCTTTTGGCACCACAGTCTGGAGAGCCACATGATGCTCGTGTGTACAAGCTTGAGACTGATGCATGTTACCACAAGCCTGAGGCATCAAGTGATAAGAAGAAAGATAAATTGAAGAAATCAGTAGTGCCAGTAACCAAGTTATCTTCCCCTGAGAATGAAGAGCAGACATCGGATCCTCTTGGTAGAGCTACTGTTGCGTCTGTCCTTTGGGAGTCCATCCAGGCACGCACAAAGTTAATTGAAATCCAGATTGTTAAGGGACTGTTTTGCAAAGATTCGGAACACGCTGAAGGTGTTGGACTCTTCATGGCC GTTAAAAGGCC ]
[+] EMBL CB634565 [ GAACACGCTGAAGGTGTTGGACTCTTCATGGCCAGTTAAAAGGCCTAAAGAACTTGGGATAAGGAAATTGGATGTGGTCACTGACAATGAAGCAAACTACAATGTTATGATCGGCAAAAGGGATTTGAGCAAGAGTAGCAGTCCTGAAACCTCGATGGCATTTATCCAAGCTGCGAAGGAATACGACATCTGCAAGTGCAGGAGAGAGCCAAGGGAAATGATAAGCCATGTGAATGACCTCGCCAAGGAAGCACACACCAAAAGCACTGACATGTTGGATCTTAGAGAGATCATTGAGCGCAAGTCTCCTCAATTTTGGGGAATGCCATTTGTGCGCATCAAGCAAGATGATTCTTCTATAAAAGCAAAATTAGGAGACTCGAAGGTCAGCGACACACCTTTTGAAGCAACTAATTATTACATGGAGGTCTGGAGCAAGGCTCAGAAAAATGATGCTTTTGAAGGGCTATTGCGTGACCTTGATCCTGACTTTGTGATAGTATTTGCAAATGATGTCTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGAATCTGGAGCCAATGTTTCCCAGCATTCTATTCC TGACCA C AGAGCACACGTACTTAT CAATCACA AGGGTTGCA TTCCGC ATTTTACCGGTAGCAAGTGCTTG ATCGTTGCTTATGAC AGTCCACCAGAGTTGATCCAG TA TGAAAACAATC AAGATTC TT CAGGAGT TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA ]
[-] EMBL CB628198 [ TAGGAGACTCGAAGGTCAGCGACACACCTTTTGAAGCAACTAATTATTACATGGAGGTCTGGAGCAAGGCTCAGAAAAATGATGCTTTTGAAGGGCTATTGCGTGACCTTGATCCTGACTTTGTGATAGTATTTGCAAATGATGTCTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGAATCTGGAGCCAATGTTTCCCAGCATTCTATTCC TGACCA C AGAGCACACGTACTTAT CAATCACA AGGGTTGCA TTCCGC ATTTTACCGGTAGCAAGTGCTTG ATCGTTGCTTATGAC AGTCCACCAGAGTTGATCCAG TA TGAAAACAATC AAGATTC TT CAGGAGT TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA CTG ACA C AACC AAAGAAGTGGACCCATTCCTTTCT TTATTTTTCCATCACCCTGGCCGCA AAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAAAAAATAGAGCAAGATTTGAGCTTT AAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTTTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAG AGGAACAGGAACTGTAAGATGTAGACAGGCAGTAAAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACA CGTGGGGAAATATCATGCACTTGTTAC ]
[-] EMBL CB634566 [ ATGCTTTTGAAGGGCTATTGCGTGACCTTGATCCTGACTTTGTGATAGTATTTGCAAATGATGTCTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGAATCTGGAGCCAATGTTTCCCAGCATTCTATTCC TGACCA C AGAGCACACGTACTTAT CAATCACA AGGGTTGCA TTCCGC ATTTTACCGGTAGCAAGTGCTTG ATCGTTGCTTATGAC AGTCCACCAGAGTTGATCCAG TA TGAAAACAATC AAGATTC TT CAGGAGT TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA CTG ACA C AACC AAAGAAGTGGACCCATTCCTTTCT TTATTTTTCCATCACCCTGGCCGCA AAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAAAAAATAGAGCAAGATTTGAGCTTT AAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTTTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAG AGGAACAGGAACTGTAAGATGTAGACAGGCAGTAAAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACC CCTTGGGAAATATCATGCACTTG ]
[-] EMBL CB625965 [ TCTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGAATCTGGAGCCAATGTTTCCCAGCATTCTATTCC TGACCA C AGAGCACACGTACTTAT CAATCACA AGGGTTGCA TTCCGC ATTTTACCGGTAGCAAGTGCTTG ATCGTTGCTTATGAC AGTCCACCAGAGTTGATCCAG TA TGAAAACAATC AAGATTC TT CAGGAGT TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA CTG ACA C AACC AAAGAAGTGGACCCATTCCTTTCT TTATTTTTCCATCACCCTGGCCGCA AAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAAAAAATAGAGCAAGATTTGAGCTTT AAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTTTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAG AGGAACAGGAACTGTAAGATGTAGACAGGCAGTAAAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACA CCTTGGGAAATATCATGCACTTGTTACAGGCTCATTGACCTTTCACCTGATTGTGTATTCTGGCGCGAAGTATTTTGGGCCTCCGATTTTGTCGAGACTTAATGCATCCGTTTTGGGGTGGCCT]
[+] EMBL BQ908572 [ gaCCAATGTTTCCCAGCAGGTGAGTCCGGGACCANGCAAGAGCACACGTACGTATCCAATCACATAGGG TGCAGTTCCGCAATTTTACC GTAGCAAGTGCTTGTATCGTTGCTTATGACAAGTCCACCAGAGTTGANCCAGTTAGTG GAACAATCAAAGATTCTTT CAGGAGTGTATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATATCTGTACATCNTACCAAAAGAAGTGGACCCATTCCTTTCTNGTATTTTTCCATCA CCTGGCCGCA AAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAANAAATAGAGCAAGATTTGAGCTTTGAAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTNTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAGTAGGAACAGGAACTGTAAGATGTAGACAGGCAGT AAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACACCCTTGGGAAATATCATGCACTTGTTACAGGCTCATTGACCTTTCAa ]
[+] EMBL BI808389 [ TTC TTTCCAGGAGT TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA CTG ACA C AACC TAAGAAGTGGACCCATTCCTTTCT TTATTTTTCCATCACCCTGGCCGCATAAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAAAAAATAGAGCAAGATTTGAGCTTT AAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTTTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAG AGG ACAGGAACTGTAAGATGTAGACAGGCAGTAAAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACA CCTTGGGAAATATCATGCACTTGTTACAGGCTCAaaaaa ]
consensusID : consensus_13505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[GCTTGATCGTTGGCTTATGACAGTCCACCAGAGTTGATCCAGTATGAAAACATCACAGATTCTTCAGGAGTTATGCTCTGTGGAATTTCGTTGGACCTGGAAGTAAGCCACAATTTGCATACTGACACCGACCCAAGACAGTGGACCCACTTCCTTTCTTTATATTGTTCCATCACCCTGGCCGCAACGGAGTACGAAGGTTGTAGTGGTCGTCGAAAGTGGCAGAACACATAATAGAGCCAGATTTGACGCTTCTACAAACGACTGGACGCCAGATTCGAAACGAGTCGCCAACCTACCTTTACATGGGCACTGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACCAGGACATGCTGTTTTTGGATGAACTTGAACCGGATGCCTTACGCATAGTTTCACCTACTGACTTATGTTAGAGGAACAGGAACCTGTAAGACTGTAGACCAGCCAGTAAAATTTCACGTCCGACTACTGACTTCGGCAATTCTATGCCCAAGATTAACCCCTTGGGAAATATCATGCACCTTGTCTACCGGCTCATTGACCTTTCCAAAAAAAAAA]
[+] EMBL BI812930 [GCTTGATCGTTGGCTTATGACAGTCCACCAGAGTTGATCCAGTATGAAAACATCACAGATTCTTCAGGAGTTATGCTCTGTGGAATTTCGTTGGACCTGGAAGTAAGCCACAATTTGCATACTGACACCGACCCAAGACAGTGGACCCACTTCCTTTCTTTATATTGTTCCATCACCCTGGCCGCAACGGAGTACGAAGGTTGTAGTGGTCGTCGAAAGTGGCAGAACACATAATAGAGCCAGATTTGACGCTTCTACAAACGACTGGACGCCAGATTCGAAACGAGTCGCCAACCTACCTTTACATGGGCACTGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACCAGGACATGCTGTTTTTGGATGAACTTGAACCGGATGCCTTACGCATAGTTTCACCTACTGACTTATGTTAGAGGAACAGGAACCTGTAAGACTGTAGACCAGCCAGTAAAATTTCACGTCCGACTACTGACTTCGGCAATTCTATGCCCAAGATTAACCCCTTGGGAAATATCATGCACCTTGTCTACCGGCTCATTGACCTTTCCAAAAAAAAAA]
consensusID : consensus_13505#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence
[AGTATAGCCACATTTTGCATACCTTGACACACACCCAAAGAAGTGGACCCACTTCCTTTCGTCTTACTCTGTCTCTCCTATTCACCCCCCGTGGCCGCCAAAACGGAGGTACGCAACGGTTTGTCACGTCGCGTGGTCGATATACGTTGGCCACAGACAAAAATACGAGCATAGATCTGTGAGCTTTAAAACGACTGGAGCCTAGATTGAAAGAGTCGCATAACCTACTTTAATGGGCATCGGTTTTGGGAGAGCTCTCTTAGNTTTTGAAGACAAGGACATCCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAGAGGAACAGGAACTGTAAGATGTAGACAGCAGTAAAATTTCAGTCCGACTACTGACTTCGCAATTCTATGCCAAAGATTAACACCTTGGGAAATATCACGCACTTGTTACAGGCTCAAAAAAAAAAAA]
[+] EMBL BQ906651 [AGTATAGCCACATTTTGCATACCTTGACACACACCCAAAGAAGTGGACCCACTTCCTTTCGTCTTACTCTGTCTCTCCTATTCACCCCCCGTGGCCGCCAAAACGGAGGTACGCAACGGTTTGTCACGTCGCGTGGTCGATATACGTTGGCCACAGACAAAAATACGAGCATAGATCTGTGAGCTTTAAAACGACTGGAGCCTAGATTGAAAGAGTCGCATAACCTACTTTAATGGGCATCGGTTTTGGGAGAGCTCTCTTAGNTTTTGAAGACAAGGACATCCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAGAGGAACAGGAACTGTAAGATGTAGACAGCAGTAAAATTTCAGTCCGACTACTGACTTCGCAATTCTATGCCAAAGATTAACACCTTGGGAAATATCACGCACTTGTTACAGGCTCAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13505#0 AACCCTACCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGC 60
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 CTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGG 120
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 GGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCG 180
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 AATCCTCTCCCAAAAAACCGAGCAGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGG 240
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 AGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGA 300
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 TCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTC 360
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 GTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCG 420
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 CAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAA 480
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 GCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAA 540
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 AATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCC 600
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 TATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTT 660
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 TCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGAAACA 720
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 ATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGAT 780
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 TAATGAGCTATCACTTCTTGAAGTACATTTTTTTGACCATGGGTTGCTTTTGGCACCACA 840
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 GTCTGGAGAGCCACATGATGCTCGTGTGTACAAGCTTGAGACTGATGCATGTTACCACAA 900
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 GCCTGAGGCATCAAGTGATAAGAAGAAAGATAAATTGAAGAAATCAGTAGTGCCAGTAAC 960
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 CAAGTTATCTTCCCCTGAGAATGAAGAGCAGACATCGGATCCTCTTGGTAGAGCTACTGT 1020
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 TGCGTCTGTCCTTTGGGAGTCCATCCAGGCACGCACAAAGTTAATTGAAATCCAGATTGT 1080
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 TAAGGGACTGTTTTGCAAAGATTCGGAACACGCTGAAGGTGTTGGACTCTTCATGGCCGT 1140
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 TAAAAGGCCTAAAGAACTTGGGATAAGGAAATTGGATGTGGTCACTGACAATGAAGCAAA 1200
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 CTACAATGTTATGATCGGCAAAAGGGATTTGAGCAAGAGTAGCAGTCCTGAAACCTCGAT 1260
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 GGCATTTATCCAAGCTGCGAAGGAATACGACATCTGCAAGTGCAGGAGAGAGCCAAGGGA 1320
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 AATGATAAGCCATGTGAATGACCTCGCCAAGGAAGCACACACCAAAAGCACTGACATGTT 1380
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 GGATCTTAGAGAGATCATTGAGCGCAAGTCTCCTCAATTTTGGGGAATGCCATTTGTGCG 1440
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 CATCAAGCAAGATGATTCTTCTATAAAAGCAAAATTAGGAGACTCGAAGGTCAGCGACAC 1500
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 ACCTTTTGAAGCAACTAATTATTACATGGAGGTCTGGAGCAAGGCTCAGAAAAATGATGC 1560
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 TTTTGAAGGGCTATTGCGTGACCTTGATCCTGACTTTGTGATAGTATTTGCAAATGATGT 1620
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 CTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGA 1680
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 ATCTGGAGCCAATGTTTCCCAGCATTCTATTCCTGACCACAGAGCACACGTACTTATCAA 1740
consensus_13505#1 ------------------------------------------------------------
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 TCACAAGGGTTGCATTCCGCATTTTACCGGTAGCAAGTGCTTGATCGTTG-CTTATGACA 1799
consensus_13505#1 --------------------------------------GCTTGATCGTTGGCTTATGACA 22
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 GTCCACCAGAGTTGATCCAGTATGAAAACAATCAAGATTCTTCAGGAGTTATG-TCTGTG 1858
consensus_13505#1 GTCCACCAGAGTTGATCCAGTATGAAAACATCACAGATTCTTCAGGAGTTATGCTCTGTG 82
consensus_13505#2 ------------------------------------------------------------
consensus_13505#0 GAATTT-GTTGGACCTGGAAGTA-AGCCACA-TTTGCATAC--TGACAC--AACCAAAGA 1911
consensus_13505#1 GAATTTCGTTGGACCTGGAAGTA-AGCCACAATTTGCATAC--TGACACCGACCCAAGAC 139
consensus_13505#2 -------------------AGTATAGCCACATTTTGCATACCTTGACACACACCCAAAGA 41
**** ******* ********* ****** * ****
consensus_13505#0 AGTGGACCCA-TTCCTTTC--TTTATTTT----------TCCATCACCC-TGGCCGC--- 1954
consensus_13505#1 AGTGGACCCACTTCCTTTC--TTTATATTGT--------TCCATCACCC-TGGCCGC--- 185
consensus_13505#2 AGTGGACCCACTTCCTTTCGTCTTACTCTGTCTCTCCTATTCACCCCCCGTGGCCGCCAA 101
********** ******** *** * * ** * *** *******
consensus_13505#0 AAAGGAG-TA-GAA---GGTTGTAGTG----GT-GTCGAAAG----TGGCAAGAAAAA-- 1998
consensus_13505#1 AACGGAG-TACGAA---GGTTGTAGTG----GTCGTCGAAAG----TGGCAGAACACATA 233
consensus_13505#2 AACGGAGGTACGCAACGGTTTGTCACGTCGCGTGGTCGATATACGTTGGCCACAGACAAA 161
** **** ** * * * **** * ** ***** * **** * * *
consensus_13505#0 -ATA-GAGCA-AGATTTGA-GCTTTAAAAGA----TGGA-GCCAGATTGAAA--GAGT-G 2046
consensus_13505#1 -ATA-GAGCC-AGATTTGACGCTTCTACAAACGACTGGACGCCAGATTCGAAACGAGTCG 290
consensus_13505#2 AATACGAGCATAGATCTGTGAGCTTTA-AAACGACTGGAGCCTAGATTGAAA--GAGTCG 218
*** **** **** ** * * * * **** * ***** ** **** *
consensus_13505#0 CA-AACCTACTTTAA--TGGGCA-TGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAA 2102
consensus_13505#1 CC-AACCTACCTTTACATGGGCACTGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACCA 349
consensus_13505#2 CATAACCTACTTTAA--TGGGCATCGGTTTTGGGAGAGCTCTCTTAGNTTTTGAAGACAA 276
* ******* ** * ****** *************** ****** ********** *
consensus_13505#0 GGACATGCTGTTTTTGGATGAA-TTGAACCGGATGGCCTTACGCATAGTTTCAC-TACTG 2160
consensus_13505#1 GGACATGCTGTTTTTGGATGAACTTGAACCGGATG-CCTTACGCATAGTTTCACCTACTG 408
consensus_13505#2 GGACATCCTGTTTTTGGATGAA-TTGAACCGGATGGCCTTACGCATAGTTTCAC-TACTG 334
****** *************** ************ ****************** *****
consensus_13505#0 ACTTATGTTAGAGGAACAGGAAC-TGTAAGA-TGTAGAC-AGGCAGTAAAATTTCA-GTC 2216
consensus_13505#1 ACTTATGTTAGAGGAACAGGAACCTGTAAGACTGTAGACCAGCCAGTAAAATTTCACGTC 468
consensus_13505#2 ACTTATGTTAGAGGAACAGGAAC-TGTAAGA-TGTAGAC--AGCAGTAAAATTTCA-GTC 389
*********************** ******* ******* ************* ***
consensus_13505#0 CGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACACCTTGGGAAATATCATGCAC- 2275
consensus_13505#1 CGACTACTGACTTCGGCAATTCTATGCCCAAGATTAACCCCTTGGGAAATATCATGCACC 528
consensus_13505#2 CGACTACTGACTTCG-CAATTCTATGCCAAAGATTAACACCTTGGGAAATATCACGCAC- 447
*************** ************ ********* *************** ****
consensus_13505#0 TTGT-TACAGGCTCATTGACCTTTCACCTGATTGTGTATTCTGGCGCGAAGTATTTTGGG 2334
consensus_13505#1 TTGTCTACCGGCTCATTGACCTTTCCAAAAAAAAAA------------------------ 564
consensus_13505#2 TTGT-TACAGGCTCAAAAA------AAAAAAA---------------------------- 472
**** *** ****** * *
consensus_13505#0 CCTCCGATTTTGTCGAGACTTAATGCATCCGTTTTGGGGTGGCCT 2379
consensus_13505#1 ---------------------------------------------
consensus_13505#2 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||