These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2311 fasta sequence [CCACGGTTTCACCCTCCCTCTCTGAGAGGGGGGGGGGGGGGGGGGAATCATTGAGTGATGACTGCCCTATCCCTGAGCAGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAAGTTGACTATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATATATATATATATATATATATATATACAAATCATCATCTTCTTCTTCATCCAAACGGCTGCGCCGCCGCTTCCGTGCTCTGCATCTTCCTCTGCCGCGGGTACGAATCCTGCCGATCGACCAAATCTCAGCTAGGTCAACGTGTTGGTGTTGCTGCTGTGGGCAGCAGTTTGGTGGCTACGAGAAAGACAAAACGAAGCTTGAAACGGATTGGAACTAATACAACCAAAAAAGAAGAAGACATGGATGATGCTACTACGACCAAAAGGAAAAGACCAGTGATTCGTTTCAATGACCTACCTACGGATATATTGATTGGTATCATATCCCGGCTGCCGATAAAAGAGGCGGCAAGGACGAGTATATTATCAAGCCACTGGAAAAAAATCTGGTGTTCCCATGTAAACTTGGAATTCTCCTTCTACTCGATGTCGCCAAGATTAGCTTCGACCTCACATGATGCACGGCTTAGGATGAAAATGTTCATCGAGAGAGTCAGTCAAGTCTTTGCGCAACACAGTGGTCTAAGTGTTCAGAAAATAGCAATCCAAGGTAAGTTGGATAATGAACATGCAGACCACATAAACAGATGGCTCAGCTTTGTTAGTGCTACTAAAACGAAAGATCTTACTTTTGATTTCAAATCCCGGTATCCTAGAGAGGGGCCCTATGATTTCCCTTTTAAGTTTTTCGGTGCTATGGACAGTTCATATTTGCTGTCCATGAGGCTTAGTGCTGTTTCTCTGAACCCGCCTGTGGATTTCAAAGCCTTTCTGAACCTTAAAAGGCTCAAGTTAGAACACACAAATATTACTGATGAAAACATGCAGATTTTGATCTCCAACTGCAATGCCTTGGAGTTTCTTGGTATCGTTGATTGTGGGAAGCTCACAAGATTGTCGACATCGCACCTTTGGAACCAGCTTAAACATTTGCATGTCGAGAGCTGCCATCTGCTTAAAGAGATAGAGTTGAATCTTGGCCTGACGAAACTTGGGTACAAGGGCACACTGATACCGTTGTCACCTCCTGGGCCATTGCTGCTAACGAATGTCTGCATGAAGCTGCAACACGCTCGTTCCTCTCTTGGATATATCTTCACCAATCTTCCAAGCACGCTGCTCCATCTCGAGACGCTGAGTTTGCAATGTTCAGAACTCGAGAGGGCTATTTTGCCAGAAAATCATATCAAATTTATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGATCTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGCAAAAGTTTGAATTACATATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGTCTTCCACCGCAGCCTCATGCCCATCTCAGGCTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC-AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA-GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCAGGTTAACGTCCTGGTTTTTTCAGTTCAGACTTCAGAATGATTTTCTTCCTGGAGCTGCTTAATGCAT] [+] EMBL AK064980 [CCACGGTTTCACCCTCCCTCTCTGAGAGGGGGGGGGGGGGGGGGGAATCATTGAGTGATGACTGCCCTATCCCTGAGCAGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAAGTTGACTATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATATATATATATATATATATATATATACAAATCATCATCTTCTTCTTCATCCAAACGGCTGCGCCGCCGCTTCCGTGCTCTGCATCTTCCTCTGCCGCGGGTACGAATCCTGCCGATCGACCAAATCTCAGCTAGGTCAACGTGTTGGTGTTGCTGCTGTGGGCAGCAGTTTGGTGGCTACGAGAAAGACAAAACGAAGCTTGAAACGGATTGGAACTAATACAACCAAAAAAGAAGAAGACATGGATGATGCTACTACGACCAAAAGGAAAAGACCAGTGATTCGTTTCAATGACCTACCTACGGATATATTGATTGGTATCATATCCCGGCTGCCGATAAAAGAGGCGGCAAGGACGAGTATATTATCAAGCCACTGGAAAAAAATCTGGTGTTCCCATGTAAACTTGGAATTCTCCTTCTACTCGATGTCGCCAAGATTAGCTTCGACCTCACATGATGCACGGCTTAGGATGAAAATGTTCATCGAGAGAGTCAGTCAAGTCTTTGCGCAACACAGTGGTCTAAGTGTTCAGAAAATAGCAATCCAAGGTAAGTTGGATAATGAACATGCAGACCACATAAACAGATGGCTCAGCTTTGTTAGTGCTACTAAAACGAAAGATCTTACTTTTGATTTCAAATCCCGGTATCCTAGAGAGGGGCCCTATGATTTCCCTTTTAAGTTTTTCGGTGCTATGGACAGTTCATATTTGCTGTCCATGAGGCTTAGTGCTGTTTCTCTGAACCCGCCTGTGGATTTCAAAGCCTTTCTGAACCTTAAAAGGCTCAAGTTAGAACACACAAATATTACTGATGAAAACATGCAGATTTTGATCTCCAACTGCAATGCCTTGGAGTTTCTTGGTATCGTTGATTGTGGGAAGCTCACAAGATTGTCGACATCGCACCTTTGGAACCAGCTTAAACATTTGCATGTCGAGAGCTGCCATCTGCTTAAAGAGATAGAGTTGAATCTTGGCCTGACGAAACTTGGGTACAAGGGCACACTGATACCGTTGTCACCTCCTGGGCCATTGCTGCTAACGAATGTCTGCATGAAGCTGCAACACGCTCGTTCCTCTCTTGGATATATCTTCACCAATCTTCCAAGCACGCTGCTCCATCTCGAGACGCTGAGTTTGCAATGTTCAGAACTCGAGAGGGCTATTTTGCCAGAAAATCATATCAAATTTATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGATCTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGCAAAAGTTTGAATTACATATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGTCTTCCACCGCAGCCTCATGCCCATCTCAGGCTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTT ] [+] EMBL AK060772 [ GACAGTTCATATTTGCTGTCCATGAGGCTTAGTGCTGTTTCTCTGAACCCGCCTGTGGATTTCAAAGCCTTTCTGAACCTTAAAAGGCTCAAGTTAGAACACACAAATATTACTGATGAAAACATGCAGATTTTGATCTCCAACTGCAATGCCTTGGAGTTTCTTGGTATCGTTGATTGTGGGAAGCTCACAAGATTGTCGACATCGCACCTTTGGAACCAGCTTAAACATTTGCATGTCGAGAGCTGCCATCTGCTTAAAGAGATAGAGTTGAATCTTGGCCTGACGAAACTTGGGTACAAGGGCACACTGATACCGTTGTCACCTCCTGGGCCATTGCTGCTAACGAATGTCTGCATGAAGCTGCAACACGCTCGTTCCTCTCTTGGATATATCTTCACCAATCTTCCAAGCACGCTGCTCCATCTCGAGACGCTGAGTTTGCAATGTTCAGAACTCGAGAGGGCTATTTTGCCAGAAAATCATATCAAATTTATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGATCTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGCAAAAGTTTGAATTACATATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGTCTTCCACCGCAGCCTCATGCCCATCTCAGGCTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCAT CATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCAGGTTAACGTCCTGGTTTTTTCAGTTCAGACTTCAGAATGATTTTCTTCCTGGAGCTGCTTAATGCAT] [+] EMBL C27779 [ TATCAAATTTATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGATCTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGNAAAAGTTTGAATTACATATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGTCTTCCACCGCAGCCTCATGCCCATCTCAGGCTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGGTCTTCGGCCTTCCTTGTATATCGATGCTGT ANCCTTGGAAGGGGTTCAAGTATCTTGATGGGTATt ] [-] EMBL CB674707 [ TCAAATTTATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGATCTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGCAAAAGTTTGAATTACATATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGTCTTCCACCGCAGCCTCATGCCCATATCAGGGTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTTTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTC ] [-] EMBL CA760510 [ CATGGCGAGCTAAGGAGTCTTCCACCGCAGCCTCACGCCCATCTCAGGCTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACGTTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTCGTCGATGTTTCTGAAATTCGTCGTGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTGTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTGTGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCAGGTTAACGTCCTGGTTTTTTCAaaaaa ] [-] EMBL CB636460 [ ttTCAGGTTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTTGACCCCAAGCCGCTTTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTTTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTTTTCCTGATTAAGATTTGAGCCACTTTGAAGGTATTGTTCATGCCAGTCAAGCTTTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTT ] [-] EMBL CB674706 [ CACATAAGTGGATTCATCGGCAAGAAAGACCAATTGGAGATGTCCCTGCACATTTTCAGAAATTCCACCATGATCAGGGTGATGAAGGTTGACCCCAAACCGCTCTTCGCCCTTCCTTGTATATTGATGCTGTCACCCTTGGAAGGGTATC AGTATTTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAAATTGTGTTCCCCTTACCCGTAAGGCCAATTCCTCTTCGTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGTCTTTGGAGTTTGGAGCAGTTAAGTCAGCCCCGATTATGTTTGGTTTTGGTTTTTGAACACCTca ] [-] EMBL CB636339 [ CGATGAAGGTCGACCCCAAGCCGCTTTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATTTTGATGGGTATGAGGTCGCCATTGAATATCTTTGCAGAGAAGACCACAACAATGTTGTCGATGTTTTTGAAATTTGTCGCGAGGAGGTCGAAACGCTTTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTTTTCCTGATTAAGATTTGAGCCACTTTGAAGGTATTGTTCATGCCAGTCAAGCTTTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCAAAATA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTTGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTTTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTT ] [+] EMBL AU029501 [ TCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAAaaa ] consensusID : consensus_13506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 658 fasta sequence [CTCCCTCTCTAAGAGGGGGGGGGGGGAATCATTGAGTGATGACTGCCCTATCCCTGAGCAGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGACTCTTGCTGAAAGTTGACTATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATC-TTCTAATATATATATATATATATATATATATATATATCACTGTGAAGAGTAAAACTTTCGGTGGAAAGGCCTCGACTTTAGCCAGCTCCCGTGAAGATACAGTAGCGAAGAGATAAGCAGGAGGCACAGGCGACGCCATCCCTGGCCTCTATAAAAGGAGACGTTGGCCTTCACTGCGGAGACACACAANCCACGAAGACACCATTCAGAGCAAAGCTTCCAAGCGCGCTTTCACCCTCCATTCCATCTTTTTTAGTAGTAGTTCCTCTAGCCTACCTTGCATAATATATATTGAAGCAAGGAGTTGTAATATAAAGGTTTGTAAGGTGAGAAAAACTTGTTTGTAAGAATTAATGAATATGAACTTAGTGAGAATATAGACATCTATATAAAAAAAAAAAAAAAAAAAAAAAAACACTGTATCCGTTACGTAGCGTATC] [+] EMBL CF291245 [CTCCCTCTCTAAGAGGGGGGGGGGGGAATCATTGAGTGATGACTGCCCTATCCCTGAGCAGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGACTCTTGCTGAAAGTTGACTATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATC TTCTAATATATATATATATATATATATATATATATATCACTGTGAAGAGTAAAACTTTCGGTGGAAAGGCCTCGACTTTAGCCAGCTCCCGTGAAGATACAGTAGCGAAGAGATAAGCAGGAGGCACAGGCGACGCCA ] [-] EMBL CF291244 [ GCGCTATGCCTGACTCTTGCTGAAAGTTGACTATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTTCTAATATATATATATATATATATATATATATATATCCCTGTGAAGAGTAAAACTTTCGGTGGAAAGGCCTCGACTTTAGCCAGCTCCCGTGAAGATACAGTAGCGAAGAGATAAGCAGGAGGCACAGGCGACGCCATCCCTGGCCTCTATAAAAGGAGACGTTGGCCTTCACTGCGGAGACACACAANCCACGAAGACACCATTCAGAGCAAAGCTTCCAAGCGCGCTTTCACCCTCCATTCCATCTTTTTTAGTAGTAGTTCCTCTAGCCTACCTTGCATAATATATATTGAAGCAAGGAGTTGTAATATAAAGGTTTGTAAGGTGAGAAAAACTTGTTTGTAAGAATTAATGAATATGAACTTAGTGAGAATATAGACATCTATATAAAAAAAAAAAAAAAAAAAAAAAAACACTGTATCCGTTACGTAGCGTATC] consensusID : consensus_13506#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [GTAGGGGGTAGGNTTCCCCNNCCTANNCCNTTNGGTGAAAAAAGGGTCTTNGCAGAANGCCATGGGCGTCANGANAATTTTCAGAATCCNCCAGANCNGGGGANGAAGTTGACCCNAGCCGTTTTTGCCNTTCCTGNAAATGAGGCTGTCACCTTGGAGGGTTTCAGTATCTTGAAGGGTAGGAGTTCGCCATGGATATTTCTGCAGAGAGACCACAACAAGTCGTCGATGTTTCTGAAATTCGTCGTGAGGAGGTCGAAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTGTGGAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTAGTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCAGGTTAACGTCCT] [-] EMBL BE229168 [GTAGGGGGTAGGNTTCCCCNNCCTANNCCNTTNGGTGAAAAAAGGGTCTTNGCAGAANGCCATGGGCGTCANGANAATTTTCAGAATCCNCCAGANCNGGGGANGAAGTTGACCCNAGCCGTTTTTGCCNTTCCTGNAAATGAGGCTGTCACCTTGGAGGGTTTCAGTATCTTGAAGGGTAGGAGTTCGCCATGGATATTTCTGCAGAGAGACCACAACAAGTCGTCGATGTTTCTGAAATTCGTCGTGAGGAGGTCGAAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTGTGGAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTAGTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCAGGTTAACGTCCT] consensusID : consensus_13506#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [ACCTCTAAGCGGTGGCGGCAGTAGGCGCTGGCGACGGCGGGCANGGGCGACGACAGTCATCAAGATCTGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAATTGACTATCGGTTCATGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATATATATATATATATATATATATACNAATCATCATCTTCTTCTTCATCCAAACGGCTGCGCGCCGCTTCCGTGCTCTGCATCTTCCTCTGCCGCGGGTACGAATCCTGCCGATCGACCAAATCTCAGCTAAGTCAACGTGTTGGTGTTGCTGCTG] [+] EMBL AU029500 [ACCTCTAAGCGGTGGCGGCAGTAGGCGCTGGCGACGGCGGGCANGGGCGACGACAGTCATCAAGATCTGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAATTGACTATCGGTTCATGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATATATATATATATATATATATATACNAATCATCATCTTCTTCTTCATCCAAACGGCTGCGCGCCGCTTCCGTGCTCTGCATCTTCCTCTGCCGCGGGTACGAATCCTGCCGATCGACCAAATCTCAGCTAAGTCAACGTGTTGGTGTTGCTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 CCACGGTTTCACCCTCCCTCTCTGAGAGGGGGGGGGGGGGGGGGGAATCATTGAGTGATG 60 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 ACTGCCCTATCCCTGAGCAGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCC 120 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 ACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAAGTTGAC 180 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 TATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTC 240 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 TAATATATATATATATATATATATATATATACAAATCATCATCTTCTTCTTCATCCAAAC 300 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 GGCTGCGCCGCCGCTTCCGTGCTCTGCATCTTCCTCTGCCGCGGGTACGAATCCTGCCGA 360 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 TCGACCAAATCTCAGCTAGGTCAACGTGTTGGTGTTGCTGCTGTGGGCAGCAGTTTGGTG 420 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 GCTACGAGAAAGACAAAACGAAGCTTGAAACGGATTGGAACTAATACAACCAAAAAAGAA 480 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 GAAGACATGGATGATGCTACTACGACCAAAAGGAAAAGACCAGTGATTCGTTTCAATGAC 540 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 CTACCTACGGATATATTGATTGGTATCATATCCCGGCTGCCGATAAAAGAGGCGGCAAGG 600 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 ACGAGTATATTATCAAGCCACTGGAAAAAAATCTGGTGTTCCCATGTAAACTTGGAATTC 660 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 TCCTTCTACTCGATGTCGCCAAGATTAGCTTCGACCTCACATGATGCACGGCTTAGGATG 720 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 AAAATGTTCATCGAGAGAGTCAGTCAAGTCTTTGCGCAACACAGTGGTCTAAGTGTTCAG 780 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 AAAATAGCAATCCAAGGTAAGTTGGATAATGAACATGCAGACCACATAAACAGATGGCTC 840 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 AGCTTTGTTAGTGCTACTAAAACGAAAGATCTTACTTTTGATTTCAAATCCCGGTATCCT 900 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 AGAGAGGGGCCCTATGATTTCCCTTTTAAGTTTTTCGGTGCTATGGACAGTTCATATTTG 960 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 CTGTCCATGAGGCTTAGTGCTGTTTCTCTGAACCCGCCTGTGGATTTCAAAGCCTTTCTG 1020 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 AACCTTAAAAGGCTCAAGTTAGAACACACAAATATTACTGATGAAAACATGCAGATTTTG 1080 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 ATCTCCAACTGCAATGCCTTGGAGTTTCTTGGTATCGTTGATTGTGGGAAGCTCACAAGA 1140 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 TTGTCGACATCGCACCTTTGGAACCAGCTTAAACATTTGCATGTCGAGAGCTGCCATCTG 1200 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 CTTAAAGAGATAGAGTTGAATCTTGGCCTGACGAAACTTGGGTACAAGGGCACACTGATA 1260 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 CCGTTGTCACCTCCTGGGCCATTGCTGCTAACGAATGTCTGCATGAAGCTGCAACACGCT 1320 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 CGTTCCTCTCTTGGATATATCTTCACCAATCTTCCAAGCACGCTGCTCCATCTCGAGACG 1380 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 CTGAGTTTGCAATGTTCAGAACTCGAGAGGGCTATTTTGCCAGAAAATCATATCAAATTT 1440 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 ATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGAT 1500 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 ------------------------------------------------------------ consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 CTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGCAAAAGTTTGAATTACAT 1560 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 --------------------------------------------------------CTCC 4 consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 ATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGT 1620 consensus_13506#2 ------------------------------------------------------------ consensus_13506#1 CTCTCTAAGAGGGGGGGGGGGGAATCATTG------------AGTGATGACTGCCCTATC 52 consensus_13506#3 ACCTCTAAGCGGTGGCGGCAGTAGGCGCTGGCGACGGCGGGCANGGGCGACGACAGTCAT 60 consensus_13506#0 CTTCCACCGCAGCCTCATGCCCATCTCAGGCTTGTACAC---ATAAGTGGATTCATCGGC 1677 consensus_13506#2 --------GTAGGGG-GTAGGNTTCCCCNNCCTANNCCN---TTNGGTGAAAAAAGGGTC 48 * * * consensus_13506#1 CCTGAGCAGACGAGCCCCAGGC-GGCGGGCCGGCGACCTAGC---CCCACGCCACGCCGG 108 consensus_13506#3 CAAGATCTGACGAGCCCCAGGC-GGCGGGCCGGCGACCTAGC---CCCACGCCACGCCGG 116 consensus_13506#0 ATGA--AAGA-CCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGG 1734 consensus_13506#2 TTNG--CAGA-ANGCCATGGGC-GTCANGANA-ATTTTCAGAA--TCCNCCA-GANCNGG 100 ** ** * * ** ** * * ** consensus_13506#1 ATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGACTCTTGCTGAAAGTTGACTATCGGT 168 consensus_13506#3 ATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAA-TTGACTATCGGT 175 consensus_13506#0 GCGATGAAGGTCGAC-CCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACC 1793 consensus_13506#2 G-GANGAAG-TTGAC-CCNA-GCCGTT-TTTGCCNTTCCT-GNAAAT-GAGGCTGTCACC 153 * * * ** * ** * * ** * * ** ** consensus_13506#1 TCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATA 228 consensus_13506#3 TCA-TGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATA 234 consensus_13506#0 CTTGGAAGGGTTTCAGTATC---TTGATGG----GTATGAGGTCGCCATT-----GAATA 1841 consensus_13506#2 TT--GGAGGGTTTCAGTATC---TTGAAGG----GTAGGAGTTCGCCAT------GGATA 198 ***** * * *** ** ** * * ** *** *** consensus_13506#1 TATATATATATATATATATATATATATCACTGTGAAGAGTAAAACTTTCGGTGGAAAGGC 288 consensus_13506#3 TATATATATATATATATATATACNAATCATCAT------CTTCTTCTTCATCCAAACGGC 288 consensus_13506#0 TCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGT 1901 consensus_13506#2 TTTCTGCAGAGA-GACCACAACAA-GTCGTCGATGTTTCTGAAATTCGTCGTGAGGAGGT 256 * * * * * * * * * ** consensus_13506#1 CTCGACTTTAGCCAGCTCCCGTGAAGATACAGTAGCGAAGAGATAAGCAGGAGGCACAGG 348 consensus_13506#3 TGCGCGCCGCTTCCGTGCTC-TGCATCTTCCTCTGCCGCGGG-TACGAATCCTGC-CGAT 345 consensus_13506#0 CGAAA-CGCTCTCGGTTTGT---GAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTA 1957 consensus_13506#2 CGAAAACGCTCTCGGTTTGT---GAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTA 313 * * * * * * * * consensus_13506#1 CGACGCCATCCCTGGCCTCTATAAAAGGAGACGTTGGCCTTCACTGCGGAGACACACAAN 408 consensus_13506#3 CGACCAAATCTCAGC------TAAGTCAACGTGTTGGTGTT-GCTGCTG----------- 387 consensus_13506#0 AGGCCAATTCCTCTTC-----CTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATG 2012 consensus_13506#2 AGGCCAATTCCTCTTC-----CTGATTAAGATTTGAGCCACTGTGGAGGTATTGTTCATG 368 * * ** * * * * consensus_13506#1 CCACGAAGACACCATTCAGAGCAAA--GCTTCCAAGCGCGCTTTCACCC--TCCATTCCA 464 consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 CCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTG 2072 consensus_13506#2 CCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTG 428 consensus_13506#1 TCTTTTTTAGTAGTAGTTCCTCTAGCCTACCTTGCATAATATATATTGAAGCAAGGAGTT 524 consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 ATTAGTTTGGTTTTGGTT--TTTGGACAACTTAGGAT--TGTGAATTTGAAGAACAACTC 2128 consensus_13506#2 ATTAGTTTGGTTTTGGTT--TTTGGACAACTTAGGAT--TGTGAATTTGAAGAACAACTC 484 consensus_13506#1 GTAATATAAAGGTTTGTAAGGTGAGAAAAACTTGTTTG-TAAGAATTAATGAATATGAAC 583 consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 GT---ATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGT 2185 consensus_13506#2 GT---ATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGT 541 consensus_13506#1 TTAGTGAGAATATAGACATCTATATAAAAAAAAAAAAAAAAAAAAAAAAACACTGTATCC 643 consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 TGCTTCAGAAAATTT-CATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCA 2244 consensus_13506#2 TGCTTCAGAAAATTT-CATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCA 600 consensus_13506#1 GTTACGTAGCGTATC--------------------------------------------- 658 consensus_13506#3 ------------------------------------------------------------ consensus_13506#0 GGTTAACGTCCTGGTTTTTTCAGTTCAGACTTCAGAATGATTTTCTTCCTGGAGCTGCTT 2304 consensus_13506#2 GGTTAACGTCCT------------------------------------------------ 612 consensus_13506#1 ------- consensus_13506#3 ------- consensus_13506#0 AATGCAT 2311 consensus_13506#2 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||