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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2311 fasta sequence
[CCACGGTTTCACCCTCCCTCTCTGAGAGGGGGGGGGGGGGGGGGGAATCATTGAGTGATGACTGCCCTATCCCTGAGCAGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAAGTTGACTATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATATATATATATATATATATATATATACAAATCATCATCTTCTTCTTCATCCAAACGGCTGCGCCGCCGCTTCCGTGCTCTGCATCTTCCTCTGCCGCGGGTACGAATCCTGCCGATCGACCAAATCTCAGCTAGGTCAACGTGTTGGTGTTGCTGCTGTGGGCAGCAGTTTGGTGGCTACGAGAAAGACAAAACGAAGCTTGAAACGGATTGGAACTAATACAACCAAAAAAGAAGAAGACATGGATGATGCTACTACGACCAAAAGGAAAAGACCAGTGATTCGTTTCAATGACCTACCTACGGATATATTGATTGGTATCATATCCCGGCTGCCGATAAAAGAGGCGGCAAGGACGAGTATATTATCAAGCCACTGGAAAAAAATCTGGTGTTCCCATGTAAACTTGGAATTCTCCTTCTACTCGATGTCGCCAAGATTAGCTTCGACCTCACATGATGCACGGCTTAGGATGAAAATGTTCATCGAGAGAGTCAGTCAAGTCTTTGCGCAACACAGTGGTCTAAGTGTTCAGAAAATAGCAATCCAAGGTAAGTTGGATAATGAACATGCAGACCACATAAACAGATGGCTCAGCTTTGTTAGTGCTACTAAAACGAAAGATCTTACTTTTGATTTCAAATCCCGGTATCCTAGAGAGGGGCCCTATGATTTCCCTTTTAAGTTTTTCGGTGCTATGGACAGTTCATATTTGCTGTCCATGAGGCTTAGTGCTGTTTCTCTGAACCCGCCTGTGGATTTCAAAGCCTTTCTGAACCTTAAAAGGCTCAAGTTAGAACACACAAATATTACTGATGAAAACATGCAGATTTTGATCTCCAACTGCAATGCCTTGGAGTTTCTTGGTATCGTTGATTGTGGGAAGCTCACAAGATTGTCGACATCGCACCTTTGGAACCAGCTTAAACATTTGCATGTCGAGAGCTGCCATCTGCTTAAAGAGATAGAGTTGAATCTTGGCCTGACGAAACTTGGGTACAAGGGCACACTGATACCGTTGTCACCTCCTGGGCCATTGCTGCTAACGAATGTCTGCATGAAGCTGCAACACGCTCGTTCCTCTCTTGGATATATCTTCACCAATCTTCCAAGCACGCTGCTCCATCTCGAGACGCTGAGTTTGCAATGTTCAGAACTCGAGAGGGCTATTTTGCCAGAAAATCATATCAAATTTATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGATCTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGCAAAAGTTTGAATTACATATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGTCTTCCACCGCAGCCTCATGCCCATCTCAGGCTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC-AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA-GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCAGGTTAACGTCCTGGTTTTTTCAGTTCAGACTTCAGAATGATTTTCTTCCTGGAGCTGCTTAATGCAT]
[+] EMBL AK064980 [CCACGGTTTCACCCTCCCTCTCTGAGAGGGGGGGGGGGGGGGGGGAATCATTGAGTGATGACTGCCCTATCCCTGAGCAGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAAGTTGACTATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATATATATATATATATATATATATATACAAATCATCATCTTCTTCTTCATCCAAACGGCTGCGCCGCCGCTTCCGTGCTCTGCATCTTCCTCTGCCGCGGGTACGAATCCTGCCGATCGACCAAATCTCAGCTAGGTCAACGTGTTGGTGTTGCTGCTGTGGGCAGCAGTTTGGTGGCTACGAGAAAGACAAAACGAAGCTTGAAACGGATTGGAACTAATACAACCAAAAAAGAAGAAGACATGGATGATGCTACTACGACCAAAAGGAAAAGACCAGTGATTCGTTTCAATGACCTACCTACGGATATATTGATTGGTATCATATCCCGGCTGCCGATAAAAGAGGCGGCAAGGACGAGTATATTATCAAGCCACTGGAAAAAAATCTGGTGTTCCCATGTAAACTTGGAATTCTCCTTCTACTCGATGTCGCCAAGATTAGCTTCGACCTCACATGATGCACGGCTTAGGATGAAAATGTTCATCGAGAGAGTCAGTCAAGTCTTTGCGCAACACAGTGGTCTAAGTGTTCAGAAAATAGCAATCCAAGGTAAGTTGGATAATGAACATGCAGACCACATAAACAGATGGCTCAGCTTTGTTAGTGCTACTAAAACGAAAGATCTTACTTTTGATTTCAAATCCCGGTATCCTAGAGAGGGGCCCTATGATTTCCCTTTTAAGTTTTTCGGTGCTATGGACAGTTCATATTTGCTGTCCATGAGGCTTAGTGCTGTTTCTCTGAACCCGCCTGTGGATTTCAAAGCCTTTCTGAACCTTAAAAGGCTCAAGTTAGAACACACAAATATTACTGATGAAAACATGCAGATTTTGATCTCCAACTGCAATGCCTTGGAGTTTCTTGGTATCGTTGATTGTGGGAAGCTCACAAGATTGTCGACATCGCACCTTTGGAACCAGCTTAAACATTTGCATGTCGAGAGCTGCCATCTGCTTAAAGAGATAGAGTTGAATCTTGGCCTGACGAAACTTGGGTACAAGGGCACACTGATACCGTTGTCACCTCCTGGGCCATTGCTGCTAACGAATGTCTGCATGAAGCTGCAACACGCTCGTTCCTCTCTTGGATATATCTTCACCAATCTTCCAAGCACGCTGCTCCATCTCGAGACGCTGAGTTTGCAATGTTCAGAACTCGAGAGGGCTATTTTGCCAGAAAATCATATCAAATTTATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGATCTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGCAAAAGTTTGAATTACATATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGTCTTCCACCGCAGCCTCATGCCCATCTCAGGCTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTT ]
[+] EMBL AK060772 [ GACAGTTCATATTTGCTGTCCATGAGGCTTAGTGCTGTTTCTCTGAACCCGCCTGTGGATTTCAAAGCCTTTCTGAACCTTAAAAGGCTCAAGTTAGAACACACAAATATTACTGATGAAAACATGCAGATTTTGATCTCCAACTGCAATGCCTTGGAGTTTCTTGGTATCGTTGATTGTGGGAAGCTCACAAGATTGTCGACATCGCACCTTTGGAACCAGCTTAAACATTTGCATGTCGAGAGCTGCCATCTGCTTAAAGAGATAGAGTTGAATCTTGGCCTGACGAAACTTGGGTACAAGGGCACACTGATACCGTTGTCACCTCCTGGGCCATTGCTGCTAACGAATGTCTGCATGAAGCTGCAACACGCTCGTTCCTCTCTTGGATATATCTTCACCAATCTTCCAAGCACGCTGCTCCATCTCGAGACGCTGAGTTTGCAATGTTCAGAACTCGAGAGGGCTATTTTGCCAGAAAATCATATCAAATTTATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGATCTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGCAAAAGTTTGAATTACATATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGTCTTCCACCGCAGCCTCATGCCCATCTCAGGCTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCAT CATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCAGGTTAACGTCCTGGTTTTTTCAGTTCAGACTTCAGAATGATTTTCTTCCTGGAGCTGCTTAATGCAT]
[+] EMBL C27779 [ TATCAAATTTATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGATCTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGNAAAAGTTTGAATTACATATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGTCTTCCACCGCAGCCTCATGCCCATCTCAGGCTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGGTCTTCGGCCTTCCTTGTATATCGATGCTGT ANCCTTGGAAGGGGTTCAAGTATCTTGATGGGTATt ]
[-] EMBL CB674707 [ TCAAATTTATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGATCTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGCAAAAGTTTGAATTACATATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGTCTTCCACCGCAGCCTCATGCCCATATCAGGGTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTTTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTC ]
[-] EMBL CA760510 [ CATGGCGAGCTAAGGAGTCTTCCACCGCAGCCTCACGCCCATCTCAGGCTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACGTTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTCGACCCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTCGTCGATGTTTCTGAAATTCGTCGTGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTGTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTGTGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCAGGTTAACGTCCTGGTTTTTTCAaaaaa ]
[-] EMBL CB636460 [ ttTCAGGTTTGTACACATAAGTGGATTCATCGGCATGAAAGACCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGGGCGATGAAGGTTGACCCCAAGCCGCTTTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTTTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTTTTCCTGATTAAGATTTGAGCCACTTTGAAGGTATTGTTCATGCCAGTCAAGCTTTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTT ]
[-] EMBL CB674706 [ CACATAAGTGGATTCATCGGCAAGAAAGACCAATTGGAGATGTCCCTGCACATTTTCAGAAATTCCACCATGATCAGGGTGATGAAGGTTGACCCCAAACCGCTCTTCGCCCTTCCTTGTATATTGATGCTGTCACCCTTGGAAGGGTATC AGTATTTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAAATTGTGTTCCCCTTACCCGTAAGGCCAATTCCTCTTCGTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGTCTTTGGAGTTTGGAGCAGTTAAGTCAGCCCCGATTATGTTTGGTTTTGGTTTTTGAACACCTca ]
[-] EMBL CB636339 [ CGATGAAGGTCGACCCCAAGCCGCTTTTCGCCCTTCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATTTTGATGGGTATGAGGTCGCCATTGAATATCTTTGCAGAGAAGACCACAACAATGTTGTCGATGTTTTTGAAATTTGTCGCGAGGAGGTCGAAACGCTTTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTTTTCCTGATTAAGATTTGAGCCACTTTGAAGGTATTGTTCATGCCAGTCAAGCTTTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCAAAATA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTTGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTTTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTT ]
[+] EMBL AU029501 [ TCCTTGTATATCGATGCTGTCACCCTTGGAAGGGTTTC AGTATCTTGATGGGTATGAGGTCGCCATTGAATATCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGTCGAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTA GTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAAaaa ]
consensusID : consensus_13506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 658 fasta sequence
[CTCCCTCTCTAAGAGGGGGGGGGGGGAATCATTGAGTGATGACTGCCCTATCCCTGAGCAGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGACTCTTGCTGAAAGTTGACTATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATC-TTCTAATATATATATATATATATATATATATATATATCACTGTGAAGAGTAAAACTTTCGGTGGAAAGGCCTCGACTTTAGCCAGCTCCCGTGAAGATACAGTAGCGAAGAGATAAGCAGGAGGCACAGGCGACGCCATCCCTGGCCTCTATAAAAGGAGACGTTGGCCTTCACTGCGGAGACACACAANCCACGAAGACACCATTCAGAGCAAAGCTTCCAAGCGCGCTTTCACCCTCCATTCCATCTTTTTTAGTAGTAGTTCCTCTAGCCTACCTTGCATAATATATATTGAAGCAAGGAGTTGTAATATAAAGGTTTGTAAGGTGAGAAAAACTTGTTTGTAAGAATTAATGAATATGAACTTAGTGAGAATATAGACATCTATATAAAAAAAAAAAAAAAAAAAAAAAAACACTGTATCCGTTACGTAGCGTATC]
[+] EMBL CF291245 [CTCCCTCTCTAAGAGGGGGGGGGGGGAATCATTGAGTGATGACTGCCCTATCCCTGAGCAGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGACTCTTGCTGAAAGTTGACTATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATC TTCTAATATATATATATATATATATATATATATATATCACTGTGAAGAGTAAAACTTTCGGTGGAAAGGCCTCGACTTTAGCCAGCTCCCGTGAAGATACAGTAGCGAAGAGATAAGCAGGAGGCACAGGCGACGCCA ]
[-] EMBL CF291244 [ GCGCTATGCCTGACTCTTGCTGAAAGTTGACTATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTTCTAATATATATATATATATATATATATATATATATCCCTGTGAAGAGTAAAACTTTCGGTGGAAAGGCCTCGACTTTAGCCAGCTCCCGTGAAGATACAGTAGCGAAGAGATAAGCAGGAGGCACAGGCGACGCCATCCCTGGCCTCTATAAAAGGAGACGTTGGCCTTCACTGCGGAGACACACAANCCACGAAGACACCATTCAGAGCAAAGCTTCCAAGCGCGCTTTCACCCTCCATTCCATCTTTTTTAGTAGTAGTTCCTCTAGCCTACCTTGCATAATATATATTGAAGCAAGGAGTTGTAATATAAAGGTTTGTAAGGTGAGAAAAACTTGTTTGTAAGAATTAATGAATATGAACTTAGTGAGAATATAGACATCTATATAAAAAAAAAAAAAAAAAAAAAAAAACACTGTATCCGTTACGTAGCGTATC]
consensusID : consensus_13506#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[GTAGGGGGTAGGNTTCCCCNNCCTANNCCNTTNGGTGAAAAAAGGGTCTTNGCAGAANGCCATGGGCGTCANGANAATTTTCAGAATCCNCCAGANCNGGGGANGAAGTTGACCCNAGCCGTTTTTGCCNTTCCTGNAAATGAGGCTGTCACCTTGGAGGGTTTCAGTATCTTGAAGGGTAGGAGTTCGCCATGGATATTTCTGCAGAGAGACCACAACAAGTCGTCGATGTTTCTGAAATTCGTCGTGAGGAGGTCGAAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTGTGGAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTAGTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCAGGTTAACGTCCT]
[-] EMBL BE229168 [GTAGGGGGTAGGNTTCCCCNNCCTANNCCNTTNGGTGAAAAAAGGGTCTTNGCAGAANGCCATGGGCGTCANGANAATTTTCAGAATCCNCCAGANCNGGGGANGAAGTTGACCCNAGCCGTTTTTGCCNTTCCTGNAAATGAGGCTGTCACCTTGGAGGGTTTCAGTATCTTGAAGGGTAGGAGTTCGCCATGGATATTTCTGCAGAGAGACCACAACAAGTCGTCGATGTTTCTGAAATTCGTCGTGAGGAGGTCGAAAACGCTCTCGGTTTGTGAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTAAGGCCAATTCCTCTTCCTGATTAAGATTTGAGCCACTGTGGAGGTATTGTTCATGCCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTGATTAGTTTGGTTTTGGTTTTTGGACAACTTAGGATTGTGAATTTGAAGAACAACTCGTATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGTTGCTTCAGAAAATTTCATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCAGGTTAACGTCCT]
consensusID : consensus_13506#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence
[ACCTCTAAGCGGTGGCGGCAGTAGGCGCTGGCGACGGCGGGCANGGGCGACGACAGTCATCAAGATCTGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAATTGACTATCGGTTCATGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATATATATATATATATATATATATACNAATCATCATCTTCTTCTTCATCCAAACGGCTGCGCGCCGCTTCCGTGCTCTGCATCTTCCTCTGCCGCGGGTACGAATCCTGCCGATCGACCAAATCTCAGCTAAGTCAACGTGTTGGTGTTGCTGCTG]
[+] EMBL AU029500 [ACCTCTAAGCGGTGGCGGCAGTAGGCGCTGGCGACGGCGGGCANGGGCGACGACAGTCATCAAGATCTGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCCACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAATTGACTATCGGTTCATGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATATATATATATATATATATATATACNAATCATCATCTTCTTCTTCATCCAAACGGCTGCGCGCCGCTTCCGTGCTCTGCATCTTCCTCTGCCGCGGGTACGAATCCTGCCGATCGACCAAATCTCAGCTAAGTCAACGTGTTGGTGTTGCTGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 CCACGGTTTCACCCTCCCTCTCTGAGAGGGGGGGGGGGGGGGGGGAATCATTGAGTGATG 60
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 ACTGCCCTATCCCTGAGCAGACGAGCCCCAGGCGGCGGGCCGGCGACCTAGCCCCACGCC 120
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 ACGCCGGATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAAGTTGAC 180
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 TATCGGTTCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTC 240
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 TAATATATATATATATATATATATATATATACAAATCATCATCTTCTTCTTCATCCAAAC 300
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 GGCTGCGCCGCCGCTTCCGTGCTCTGCATCTTCCTCTGCCGCGGGTACGAATCCTGCCGA 360
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 TCGACCAAATCTCAGCTAGGTCAACGTGTTGGTGTTGCTGCTGTGGGCAGCAGTTTGGTG 420
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 GCTACGAGAAAGACAAAACGAAGCTTGAAACGGATTGGAACTAATACAACCAAAAAAGAA 480
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 GAAGACATGGATGATGCTACTACGACCAAAAGGAAAAGACCAGTGATTCGTTTCAATGAC 540
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 CTACCTACGGATATATTGATTGGTATCATATCCCGGCTGCCGATAAAAGAGGCGGCAAGG 600
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 ACGAGTATATTATCAAGCCACTGGAAAAAAATCTGGTGTTCCCATGTAAACTTGGAATTC 660
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 TCCTTCTACTCGATGTCGCCAAGATTAGCTTCGACCTCACATGATGCACGGCTTAGGATG 720
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 AAAATGTTCATCGAGAGAGTCAGTCAAGTCTTTGCGCAACACAGTGGTCTAAGTGTTCAG 780
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 AAAATAGCAATCCAAGGTAAGTTGGATAATGAACATGCAGACCACATAAACAGATGGCTC 840
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 AGCTTTGTTAGTGCTACTAAAACGAAAGATCTTACTTTTGATTTCAAATCCCGGTATCCT 900
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 AGAGAGGGGCCCTATGATTTCCCTTTTAAGTTTTTCGGTGCTATGGACAGTTCATATTTG 960
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 CTGTCCATGAGGCTTAGTGCTGTTTCTCTGAACCCGCCTGTGGATTTCAAAGCCTTTCTG 1020
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 AACCTTAAAAGGCTCAAGTTAGAACACACAAATATTACTGATGAAAACATGCAGATTTTG 1080
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 ATCTCCAACTGCAATGCCTTGGAGTTTCTTGGTATCGTTGATTGTGGGAAGCTCACAAGA 1140
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 TTGTCGACATCGCACCTTTGGAACCAGCTTAAACATTTGCATGTCGAGAGCTGCCATCTG 1200
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 CTTAAAGAGATAGAGTTGAATCTTGGCCTGACGAAACTTGGGTACAAGGGCACACTGATA 1260
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 CCGTTGTCACCTCCTGGGCCATTGCTGCTAACGAATGTCTGCATGAAGCTGCAACACGCT 1320
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 CGTTCCTCTCTTGGATATATCTTCACCAATCTTCCAAGCACGCTGCTCCATCTCGAGACG 1380
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 CTGAGTTTGCAATGTTCAGAACTCGAGAGGGCTATTTTGCCAGAAAATCATATCAAATTT 1440
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 ATGTATCTAAAGCATTTGAGGTTGCAATTGAGACACCCTGTGACGGAAAAGAAGATTGAT 1500
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 ------------------------------------------------------------
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 CTTCTTGACTTTGCCTGCCTACTGGAAGCTGCTCCTTTACTGCAAAAGTTTGAATTACAT 1560
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 --------------------------------------------------------CTCC 4
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 ATGTGGATGCCCCTTCACCATCAACGGTATCGCGAAGAAGCTCATGGCGAGCTACGGAGT 1620
consensus_13506#2 ------------------------------------------------------------
consensus_13506#1 CTCTCTAAGAGGGGGGGGGGGGAATCATTG------------AGTGATGACTGCCCTATC 52
consensus_13506#3 ACCTCTAAGCGGTGGCGGCAGTAGGCGCTGGCGACGGCGGGCANGGGCGACGACAGTCAT 60
consensus_13506#0 CTTCCACCGCAGCCTCATGCCCATCTCAGGCTTGTACAC---ATAAGTGGATTCATCGGC 1677
consensus_13506#2 --------GTAGGGG-GTAGGNTTCCCCNNCCTANNCCN---TTNGGTGAAAAAAGGGTC 48
* * *
consensus_13506#1 CCTGAGCAGACGAGCCCCAGGC-GGCGGGCCGGCGACCTAGC---CCCACGCCACGCCGG 108
consensus_13506#3 CAAGATCTGACGAGCCCCAGGC-GGCGGGCCGGCGACCTAGC---CCCACGCCACGCCGG 116
consensus_13506#0 ATGA--AAGA-CCAATTGGAGCTGTCACTGCACATTCTCAGAAATTCCGCCATGATCAGG 1734
consensus_13506#2 TTNG--CAGA-ANGCCATGGGC-GTCANGANA-ATTTTCAGAA--TCCNCCA-GANCNGG 100
** ** * * ** ** * * **
consensus_13506#1 ATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGACTCTTGCTGAAAGTTGACTATCGGT 168
consensus_13506#3 ATCCGGCTGTCCGTTGCCGGCGGCGCTATGCCTGCCTCTTGCTGAAA-TTGACTATCGGT 175
consensus_13506#0 GCGATGAAGGTCGAC-CCCAAGCCGCTCTTCGCCCTTCCTTGTATATCGATGCTGTCACC 1793
consensus_13506#2 G-GANGAAG-TTGAC-CCNA-GCCGTT-TTTGCCNTTCCT-GNAAAT-GAGGCTGTCACC 153
* * * ** * ** * * ** * * ** **
consensus_13506#1 TCAGTGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATA 228
consensus_13506#3 TCA-TGTTCGTTTCGGATTAGAGTTGGAGGTCAAGTCGGTGCTCATCATCTTCTAATATA 234
consensus_13506#0 CTTGGAAGGGTTTCAGTATC---TTGATGG----GTATGAGGTCGCCATT-----GAATA 1841
consensus_13506#2 TT--GGAGGGTTTCAGTATC---TTGAAGG----GTAGGAGTTCGCCAT------GGATA 198
***** * * *** ** ** * * ** *** ***
consensus_13506#1 TATATATATATATATATATATATATATCACTGTGAAGAGTAAAACTTTCGGTGGAAAGGC 288
consensus_13506#3 TATATATATATATATATATATACNAATCATCAT------CTTCTTCTTCATCCAAACGGC 288
consensus_13506#0 TCTCTGCAGAGAAGACCACAACAATGTTGTCGATGTTTCTGAAATTCGTCGCGAGGAGGT 1901
consensus_13506#2 TTTCTGCAGAGA-GACCACAACAA-GTCGTCGATGTTTCTGAAATTCGTCGTGAGGAGGT 256
* * * * * * * * * **
consensus_13506#1 CTCGACTTTAGCCAGCTCCCGTGAAGATACAGTAGCGAAGAGATAAGCAGGAGGCACAGG 348
consensus_13506#3 TGCGCGCCGCTTCCGTGCTC-TGCATCTTCCTCTGCCGCGGG-TACGAATCCTGC-CGAT 345
consensus_13506#0 CGAAA-CGCTCTCGGTTTGT---GAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTA 1957
consensus_13506#2 CGAAAACGCTCTCGGTTTGT---GAGCTGGTTTATCCAGATTGTGTTCGCCTTACCCGTA 313
* * * * * * * *
consensus_13506#1 CGACGCCATCCCTGGCCTCTATAAAAGGAGACGTTGGCCTTCACTGCGGAGACACACAAN 408
consensus_13506#3 CGACCAAATCTCAGC------TAAGTCAACGTGTTGGTGTT-GCTGCTG----------- 387
consensus_13506#0 AGGCCAATTCCTCTTC-----CTGATTAAGATTTGAGCCACTCTGAAGGTATTGTTCATG 2012
consensus_13506#2 AGGCCAATTCCTCTTC-----CTGATTAAGATTTGAGCCACTGTGGAGGTATTGTTCATG 368
* * ** * * * *
consensus_13506#1 CCACGAAGACACCATTCAGAGCAAA--GCTTCCAAGCGCGCTTTCACCC--TCCATTCCA 464
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 CCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTG 2072
consensus_13506#2 CCAGTCAAGCTCTACACAATTTGGACGACTTTGGAGTTTGGAGCAGCTAAGTCAGCCCTG 428
consensus_13506#1 TCTTTTTTAGTAGTAGTTCCTCTAGCCTACCTTGCATAATATATATTGAAGCAAGGAGTT 524
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 ATTAGTTTGGTTTTGGTT--TTTGGACAACTTAGGAT--TGTGAATTTGAAGAACAACTC 2128
consensus_13506#2 ATTAGTTTGGTTTTGGTT--TTTGGACAACTTAGGAT--TGTGAATTTGAAGAACAACTC 484
consensus_13506#1 GTAATATAAAGGTTTGTAAGGTGAGAAAAACTTGTTTG-TAAGAATTAATGAATATGAAC 583
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 GT---ATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGT 2185
consensus_13506#2 GT---ATGTGTTTTAGTTCCTTGACGGTAACTTATTTAACTTCCTTTTCTGTATGATGGT 541
consensus_13506#1 TTAGTGAGAATATAGACATCTATATAAAAAAAAAAAAAAAAAAAAAAAAACACTGTATCC 643
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 TGCTTCAGAAAATTT-CATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCA 2244
consensus_13506#2 TGCTTCAGAAAATTT-CATCACTGGAAAGTGTTTTTGTGATTGGAAATGGTGGTCGTTCA 600
consensus_13506#1 GTTACGTAGCGTATC--------------------------------------------- 658
consensus_13506#3 ------------------------------------------------------------
consensus_13506#0 GGTTAACGTCCTGGTTTTTTCAGTTCAGACTTCAGAATGATTTTCTTCCTGGAGCTGCTT 2304
consensus_13506#2 GGTTAACGTCCT------------------------------------------------ 612
consensus_13506#1 -------
consensus_13506#3 -------
consensus_13506#0 AATGCAT 2311
consensus_13506#2 -------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||