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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 836 fasta sequence
[TGTTTTTTTTTTTTTTTTTTAGCCAAACCAGTTTAATATATTCATCACTTCATCTGTGGATACACCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC-TTCTTCTTACTCCCAACGA-GGATGTAACTATAGCTCATGCTCTATGC-TTCTAAAC-TCTTTTCTTATTAAATAAAGTGGG-CATGAGTTCTAAAAAAAAAAAAAA--CATAGCA-CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG-CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT-CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAGAGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC]
[-] EMBL CB967443 [TGTTTTTTTTTTTTTTTTTTAGCCAAACCAGTTTAATATATTCATCACTTCATCTGTGGATACACCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTCAAAAAAAAAAAAA CATAGCA CATCGATTAACACAT CACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGC GTCTCGCCGa ]
[+] EMBL CB630945 [ TAGCCAAACCAGTTTAATATATTCATCACTTCCTTTGTGGATACACCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAGA ]
[+] EMBL BE607420 [ CCAAACCAGTTTAATATATTCATCACTTCATCTGTGGATACNGCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGA ]
[+] EMBL BE607392 [ CCAAACCAGTTTAATATATTCATCACTTCATCTGTGGATACNGCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGA ]
[-] EMBL CB630944 [ CCAGTTTAATATATTCATCACTTCATCTGTGGATACACCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCGCATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAATTAAAGAGAA ]
[+] EMBL CA758942 [ GTTTAATATATTCATCACTTCATCTGTGGATAGGCGATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAGAGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC]
[-] EMBL BE041101 [ gGGATACCCCATTCCAAGCATAGTCCGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGACTTTCTTCTTACTCCCAACGAGGGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATANAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAGAGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA ]
[-] EMBL CB619280 [ TGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGA ]
[-] EMBL BE040803 [ ACA AGCCCCTCGGGAGAGGCC TTCTTCTTACTCCCACCGA GGATGGAACTATAGCTCATGCTCTAAGC TTCTAAACTTCCTTTCTTATTAAATAAAGTGGG CATGAGTTCCAAAAAAAAAAAAAA CATAGCA CATCGATTAACCCATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAACCAGA ]
[-] EMBL BE040887 [ ccTCAGGAGAGGAT TTTTTCTTACTCCCAACGA GGAT TAACTAAAGCTCATGCTCTA GCTTTCTAAAC TCTTTTCCTATTTAATAAAGTGGGCCATGAGTTCTAAAAAAAAAAAAAAACCATAGCACCATCGATTTACACATCACACACACACACACCATATATATTGGTCAAGCCCCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAGAGCttt ]
[+] EMBL BE040365 [ AGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATT ]
[-] EMBL BE228717 [ ACACGCCACACATGATAGATGGTAGATGCAGGCAGGCATNTNAACAGTTGCAAGGGNTGCACCTGCAGNTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGANTCTGCGGCCGCCTCAAACTGCTGCGCNTTNTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCNGCTGCTCTTCTCTTCCAGGTCAGGGNACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCNGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTNTGTAATTAAGCTCCAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAG ]
consensusID : consensus_13509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence
[TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTATCTGATTATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGGCGCGAATGCATCCAACCACAATTAACCACTGCTAAGCTACGGGCCCCCACTTCACTTGCCGGGGACGAAGTTGGGGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA]
[+] EMBL CB684580 [TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTATCTGATTATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGGCGCGAATGCATCCAACCACAATTAACCACTGCTAAGCTACGGGCCCCCACTTCACTTGCCGGGGACGAAGTTGGGGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13509#0 TGTTTTTTTTTTTTTTTTTTAGCCAAACCAGTTTAATATATTCATCACTTCATCTGTGGA 60
consensus_13509#1 ------------------------------------------------------------
consensus_13509#0 TACACCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAG 120
consensus_13509#1 ------------------------------------------------------------
consensus_13509#0 GACTTCTTCTTACTCCCAACGAGGATGTAACTATAGCTCATGCTCTATGCTTCTAAACTC 180
consensus_13509#1 ------------------------------------------------------------
consensus_13509#0 TTTTCTTATTAAATAAAGTGGGCATGAGTTCTAAAAAAAAAAAAAACATAGCACATCGAT 240
consensus_13509#1 ------------------------------------------------------------
consensus_13509#0 TAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAG 300
consensus_13509#1 ------------------------------------------------------------
consensus_13509#0 CTTCTTTATTTTTCTGCATCACAATTCACACGCACACATGATAGATGGTAGATGCAGGCA 360
consensus_13509#1 ------------------------------------------------------------
consensus_13509#0 GGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGC 420
consensus_13509#1 -----------------------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCG-C 36
* ** ** * ** * * * *
consensus_13509#0 GGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCT-TCTTCTCCGGCGCCACAC 479
consensus_13509#1 TCTCTCTCTCTATCTGATTATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGA 96
**** * * * *** ** ** ***** ** * * *
consensus_13509#0 CCAGCACGACGGTGGCCTTGG-TGC-TGCTGCTCTTCTCTTCCAG-GTCAGGGTACTTCT 536
consensus_13509#1 CAACGAACTCGCTGGGCGCGAATGCATCCAACCACAATTAACCACTGCTAAGCTACGGGC 156
* * * ** *** * * *** * * * * *** * * * ***
consensus_13509#0 TTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAA-----GACAT 591
consensus_13509#1 CCCCACTTCACTTGCCGGGGACGAAGTTGGGGGCGTACGCCCAGGCGTTGTTGTTGACGG 216
** * * * * * ** ** ** * * * *** * ***
consensus_13509#0 CTTCTCTCAGTCTGTAATTAAGCTCAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAA 651
consensus_13509#1 GGTCGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 276
** * ** **** ** * ** * ** ** * * ** ***
consensus_13509#0 GAAGAGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 711
consensus_13509#1 AGAGAGA-----GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 331
**** * * * *** ******************************
consensus_13509#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTCTGTCT 771
consensus_13509#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA------------ 379
************************************************
consensus_13509#0 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 831
consensus_13509#1 ------------------------------------------------------------
consensus_13509#0 CTCTC 836
consensus_13509#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||