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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1153 fasta sequence
[TTATGCACATTCGAATTGCTAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG-TGGCC-GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA-GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG-ACAAATAAGCTTGGCGCAA-AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGGATGTTATGCCAAACTACATTGATAAGGAAGCAGTGTTACATTCCTTGGTTTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK060052 [TTATGCACATTCGAATTGCTAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGGCGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGG ]
[+] EMBL AK104227 [TTATGCACATTCGAATTGCTAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGGCGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGG ]
[+] EMBL AK059943 [ ATGCACATTCGAATTGCTAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGAGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGGCGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGGATGTTATGCCAAACTACATTGATAAGGAAGCAGTGTTACATTC ]
[+] EMBL AU032398 [ TCGAATTGCTAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGANCCCGTCTGCCCGGACANCCGCNACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTaa ]
[+] EMBL OSS14650A [ tagATTGCNAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCNATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGNTGNNGNGCCTGGGGCTGCCGCCCTGGNGCGGCGCAGGTNGCCGTNCCGGCGAGGACGGACGGNTTCGTNTACGGTGGGAAGACGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGNGTTGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGGCTCGNGGGTGACCGTCGTCGTGCACCTCTTCCCACTANCT ]
[+] EMBL CB627688 [ AGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAA ]
[+] EMBL CF311228 [ GGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATA ]
[-] EMBL CB627689 [ TGCCCGGACAGCCGCGACGCG TGGCCNGGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGACGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGAGTTGTATGAAATATAGTATGCATT ]
[-] EMBL CB682717 [ ACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGGCGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAAGAAGACTTGTATGAAATATAGTATGCATTTTAAaaaaaaaga ]
[-] EMBL CA762116 [ agccaagggGTACCAGGAGGGTTATTACAACCAGCCAANGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTACGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGACGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAGAGAATTTCTATAATACAAAAGAGATGTGGCTCTCTCATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGGATGTTATGCCAAAaaaaaaaaa ]
[+] EMBL BI794939 [ CATACAAA CA GTTTCAATGATTC AAATCACGATCAA CCACACGAATTTCTTTCAAGTAT GTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAAT GCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATAC ACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG AC AATAAGCTTGACGC A AAAC GTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATAC AAAGAGATGTAGCTCTCAAAAAAAAa ]
[+] EMBL AU032401 [ CCCTTATTAGTGACNCTGGTTCCCCACTGGAATACAANAAGTGGCAATCAATCCTTGANCCATTGGTTGGCAAGATGTAGNGAGTNTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAGAACAAATAAGTTTGGCGCAACACTCAGTATGATTTCGCCAAGATATAGATGGANCGATATNGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGNCATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATAAAAaa ]
[+] EMBL AU096660 [ ATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATNCAAGACTCAAG NCAAATAAGCTTGGCGCAA AAACAGTATGATTTCNCCAAGATATAGATGGAACGATATTGATCNCAAAGATCAAGTTTAGTTAGGCAAATAAANGGGCAACCCTACTCTAATGACATATATTGTCTTTNCCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGGATGTTATGCCAAACTACATTGATAAGGAAGCAGTGTTACATTCCTTGGTTTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||