These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2242 fasta sequence [ACCAACCCCATCCCTAATCACCACCACCCCCCCATCCCACCATCGAACCGCCACCAAAAAAAGCCGAAGCTCGCTCGCCGCCGCCGCCGCCGCCGGGGACTTCGCCGGAGGGAGGAGAAGCCAACCCGCCCGCCCGCGCGCGCGTACGTACGAGGCCTGCTCCTTCCGTCGGAAGGGAAGCATCGGGATGGCGTCGATTTCGCCGACGTCTTCATCGGTCGCCGCCCTCCGCGGCCACCCGGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATTTCCTTCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATCATTGAAAAGGGATGGTGCTTTTCCAGGCGACGGTTACTCAGGGAATGATAACACGGTGTTACCAAAGAGCACTTCTGTTCGTGGCCAGGACTATCCAACTGCTGACTCTGTACTCCCAACGGAATCCATCATCGTGCCAGAAATCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTTCTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTCTATTTCCGAGGCCATCAAAGATATTCAACAAGGAAAACTTGTGATTGTTGTTGACGATGAATCAAGAGAAAATGAGGGAGATCTTATAATGGCTGCTTCTTTGGTTACCCCAGAGGCCATGGCGTTTGTTGTAAGATATGGCACAGGAATAGTGTGTGTTAGCATGAAAGAAGAGGATCTTGAAAGATTGAACCTTCCTTTGATGGTTGCAACAAAGGAAAATGAGGAGAAGCTCTGTACTGCATTCACTGTTACAGTGGATGCTAAAGAGGGAACAACAACTGGGGTATCTGCAAAGGATAGGGCAAAGACAGTTATGACTCTTGCATCCCCTGACTCTAAGCCTGAAGACTTCAATCGGCCTGGTCATATTTTCCCTCTGAAATACAGAGAGGGTGGTGTTCTGAAACGAGCTGGACATACTGAAGCATCTGTAGATCTTGCTATGTTAGCTGGGTTACCTCCTGCTGCGGTCTTATGTGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGT-GTTTGCTGAAAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGACAGGCTAGTTGAACGTTCATCTGTTGCACGCTTACCTTTGAGATGGGGTAATGTCCGCGCTTACTGCTACAGATCTGTTATTGATGGGATAGAGCATATTGCAATGGTGAAAGGGGAGA-TTGGAGATGGTCAAGGCGTTTTAGTGAGGGTGCACTCCGAATGCCTCACAGGGGACATTTTTGGATCAGCAAGATGTGATTGTGGTGATCAGCTTGCCATGGCAATGGAGATGATTGAGAAGGCTGGAAGGGGTGTACTAGTTTATCTTCGTGGACATGAAGGGAGGGGTATTGGTCTCGGTCACAAGCTCCGTGCTTATAACCTGCAAGATGACGGGCGCGACACTGTGGAGGCTAATGAAGACCTAGGACTGCCTGTGGATTCACGGGAATATGGCATTGGTGCACAGATATTACGTGATCTGGGGGTCCGTTCAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAAGGGTTATGGATTGAGCATTGTGGGCAGGGTTCCCTTGGTAACTCCAATCACCTCAGAGAATCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGGCCAAGCTAGCCATCAGACGGGCAGCAATGGTGCCAAAGGGGAGCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCA-AATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGCCACACAACTGGGTTATTACTGTAAATATATACACACACATAAACT-GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG-AATTG-AGAAGACTGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTTTTGTTCTGGGAAGCCTTTGGA-NCCTTACATTATTTCTTGCACTACGCATATGCTGCCAAAAAA] [+] EMBL AK069475 [ACCAACCCCATCCCTAATCACCACCACCCCCCCATCCCACCATCGAACCGCCACCAAAAAAAGCCGAAGCTCGCTCGCCGCCGCCGCCGCCGCCGGGGACTTCGCCGGAGGGAGGAGAAGCCAACCCGCCCGCCCGCGCGCGCGTACGTACGAGGCCTGCTCCTTCCGTCGGAAGGGAAGCATCGGGATGGCGTCGATTTCGCCGACGTCTTCATCGGTCGCCGCCCTCCGCGGCCACCCGGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATTTCCTTCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATCATTGAAAAGGGATGGTGCTTTTCCAGGCGACGGTTACTCAGGGAATGATAACACGGTGTTACCAAAGAGCACTTCTGTTCGTGGCCAGGACTATCCAACTGCTGACTCTGTACTCCCAACGGAATCCATCATCGTGCCAGAAATCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTTCTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTCTATTTCCGAGGCCATCAAAGATATTCAACAAGGAAAACTTGTGATTGTTGTTGACGATGAATCAAGAGAAAATGAGGGAGATCTTATAATGGCTGCTTCTTTGGTTACCCCAGAGGCCATGGCGTTTGTTGTAAGATATGGCACAGGAATAGTGTGTGTTAGCATGAAAGAAGAGGATCTTGAAAGATTGAACCTTCCTTTGATGGTTGCAACAAAGGAAAATGAGGAGAAGCTCTGTACTGCATTCACTGTTACAGTGGATGCTAAAGAGGGAACAACAACTGGGGTATCTGCAAAGGATAGGGCAAAGACAGTTATGACTCTTGCATCCCCTGACTCTAAGCCTGAAGACTTCAATCGGCCTGGTCATATTTTCCCTCTGAAATACAGAGAGGGTGGTGTTCTGAAACGAGCTGGACATACTGAAGCATCTGTAGATCTTGCTATGTTAGCTGGGTTACCTCCTGCTGCGGTCTTATGTGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGT GTTTGCTGAAAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGACAGGCTAGTTGAACGTTCATCTGTTGCACGCTTACCTTTGAGATGGGGTAATGTCCGCGCTTACTGCTACAGATCTGTTATTGATGGGATAGAGCATATTGCAATGGTGAAAGGGGAGA TTGGAGATGGTCAAGGCGTTTTAGTGAGGGTGCACTCCGAATGCCTCACAGGGGACATTTTTGGATCAGCAAGATGTGATTGTGGTGATCAGCTTGCCATGGCAATGGAGATGATTGAGAAGGCTGGAAGGGGTGTACTAGTTTATCTTCGTGGACATGAAGGGAGGGGTATTGGTCTCGGTCACAAGCTCCGTGCTTATAACCTGCAAGATGACGGGCGCGACACTGTGGAGGCTAATGAAGACCTAGGACTGCCTGTGGATTCACGGGAATATGGCATTGGTGCACAGATATTACGTGATCTGGGGGTCCGTTCAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAAGGGTTATGGATTGAGCATTGTGGGCAGGGTTCCCTTGGTAACTCCAATCACCTCAGAGAATCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGGCCAAGCTAGCCATCAGACGGGCAGCAATGGTGCCAAAGGGGAGCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCA AATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGCCACACAACTGGGTTATTACTGTAAATATATACACACACATAAACT GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACTGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTT ] [+] EMBL CB620370 [ AACTGCTGCCTCTGTACTCCCAACGGAATCCGTCATCGTGCCAGAAATCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTTCTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTCTATTTCCGAGGCCATCAAAGATATTCAACAAGGAAAACTTGTGATTGTTGTTGACGATGAATCAAGAGAAAATGAGGGAGATCTTATAATGGCTGCTTCTTTGGTTACCCCAGAGGCCATGGCGTTTGTTGTAAGATATGGCACAGGAATAGTGTGTGTTAGCATGAAAGAAGAGGATCTTGAAAGATTGAACCTTCCTTTGATGGTTGCAACAAAGGAAAATGAGGAGAAGCTCTGTACTGCATTCACTGTTACAGTGGATGCTAAACAGGGAACAACAACTGGGGTATCTGCAAAGGATAGGGCAAAGACAGTTATGACTCTTGCATCCCCTGACTCTAAGCCTGAAGACTTCAATCGGCCTGGTCATATTTTCCCTCTGAAATACAGAGAGGGTGGTGTTCTGAAACGAGCTGGACATACTGAAGCATCTGTAGATCTTGCTATGTTAGCTGGGTTACCTCCTGCTGCGGTCTTATGTGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGT GTTTGCTGAAAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGACAGGCTAGTTGAACGTTCATCTGTTGCACGCTTACCTTTGAGATGGGGTAATGTCCGCGCTTACTGCTAC ] [+] EMBL AK058464 [ CGATGAATCAAGAGAAAATGAGGGAGATCTTATAGTGGCTGCTTCTTTGGTTACCCCAGAGGCCATGGCGTTTGTTGTAAGATATGGCACAGGAATAGTGTGTGTTAGCATGAAAGAAGAGGATCTTGAAAGATTGAACCTTCCTTTGATGGTTGCAACAAAGGAAAATGAGGAGAAGCTCTGTACTGCATTCACTGTTACAGTGGATGCTAAAGAGGGAACAACAACTGGGGTATCTGCAAAGGATAGGGCAAAGACAGTTATGACTCTTGCATCCCCTGACTCTAAGCCTGAAGACTTCAATCGGCCTGGTCATATTTTCCCTCTGAAATACAGAGAGGGTGGTGTTCTGAAACGAGCTGGACATACTGAAGCATCTGTAGATCTTGCTATGTTAGCTGGGTTACCTCCTGCTGCGGTCTTATGTGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGT GTTTGCTGAAAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGACAGGCTAGTTGAACGTTCATCTGTTGCACGCTTACCTTTGAGATGGGGTAATGTCCGCGCTTACTGCTACAGATCTGTTATTGATGGGATAGAGCATATTGCAATGGTGAAAGGGGAGA TTGGAGATGGTCAAGGCGTTTTAGTGAGGGTGCACTCCGAATGCCTCACAGGGGACATTTTTGGATCAGCAAGATGTGATTGTGGTGATCAGCTTGCCATGGCAATGGAGATGATTGAGAAGGCTGGAAGGGGTGTACTAGTTTATCTTCGTGGACATGAAGGGAGGGGTATTGGTCTCGGTCACAAGCTCCGTGCTTATAACCTGCAAGATGACGGGCGCGACACTGTGGAGGCTAATGAAGACCTAGGACTGCCTGTGGATTCACGGGAATATGGCATTGGTGCACAGATATTACGTGATCTGGGGGTCCGTTCAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAAGGGTTATGGATTGAGCATTGTGGGCAGGGTTCCCTTGGTAACTCCAATCACCTCAGAGAATCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGGCCAAGCTAGCCATCAGACGGGCAGCAATGGTGCCAAAGGGGAGCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCA AATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGCCACACAACTGGGTTATTACTGTAAATATATACACACACATAAACT GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACTGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCA ] [+] EMBL AU062721 [ GGTTACCTNTCNCTGCGGTCTNATGTGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGTNGTTTNCTGAAAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGACAGGCTAGTTGAACGTTCATCTGTTGCACNCTTACCTTCGAGATGGGGTAATGTCCGCGCTTACTGCTACAGATCTNTTATTGATGGGATAGAGCATATTGCAATGGTGAAAGGGGAGATTTGGAGATGGT ] [-] EMBL CB620371 [ CAAGATGTGATTGTGGTGATCAGCTTGCCATGGCAATGGAGATGATTGAGAAGGCTGGAAGGGGTGTACTAGTTTATCTTCGTGGACATGAAGGGAGGGGTATTGGTCTCGGTCACAAGCTCCGTGCTTATAACCTGCAAGATGACGGGCGCGACACTGTGGAGGCTAATGAAGACCTAGGACTGCCTGTGGATTCACGGGAATATGGCATTGGTGCACAGATATTACGTGATCTGGGGGTCCGTTCAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAAGGGTTATGGATTGAGCATTGTGGGCAGGGTTCCCTTGGTAACTCCAATCACCTCAGAGAATCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGGCCAAGCTAGCCATCAGACGGGCAGCAATGGCGCCAAAGGGGAGCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCA AATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGACACACAACTGGGTTATTACTGTAAATATGTACACACACATAAACT GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACCGGCGATAAAAATATCGACTG ] [+] EMBL AU100767 [ CAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAAGGGTTATGGATTGAGCATTGTGGGCAGGGTNCCCTTGGTAACTCCAATCACCTCAGAGAATCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGGCCAAGCTAGCCATCAGACGGGCAGCAATGGTGCCAAAGGGGAGCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCA AATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGCCACACAACTGGGTTATTACTGTAAATATATACACACACATAAACT GCTNCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACTGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAAAAaaa ] [+] EMBL AU031986 [ CCAAGCTANCCATCAGACGGGCAGCAATGGTGCCAAAGGGGANCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTNTCA AATTATGCTACAANATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCNTAATAAAAGTATCCCTTTATNTGTTGTAATCCACAGCCACACAACTGGGTTATTACTGTAAATATATACACACACATAAACT GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACTGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTTTTGTTCTGGGAAGCCTTTGGA NCCTTACATTATTTCTTGCACTACGCATATGCTGCCAAAAAA] [+] EMBL BI794891 [ TTATGTGATGGAGTTTGTCACAATTATGCTACAACATATGTTCGTGGTGAACC ATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGACACACAACTGGGTTATTACTGTAAATATGTACACACACATAAACT GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACCGGCGATAAAAATATCGACTGAGATCC AGGC ATACTAGTATGAATCTAACTCCC ATATTGAAAGAATTTTTGTTCTGGGAAGCCTTTGGATCCCTTAaaaaaaaaa ] [-] EMBL D42987 [ CACAGCCACACAACTGGGNTATTACTGTNAATATATACACACNCATAAACTAGCNCCCTANCGGGTACAGACTCCAGCCTTACCTGAAATTGTAGAAGACTGGCGATNAAAATATCGNCTTAGATCCNAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTTT ] consensusID : consensus_13518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 570 fasta sequence [GTAAAATATACTAGTTTTACTCATTCCNTTTTAATGAGAATATATAGGGGTACTTAAAATAAGAGTTTATATATATTAATTGCTGAATCTGATTGATTCTACTCACTTCTGTTTGTGTAAATGCAGGGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATTTCCTTCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATCATTGAAAAGGGATGGTGCTTTTCCNGGCGACGGTTACTCAGGGAATGATAACACGGTGTTACCAAAGAGCACTTCTGTTCGTGGNCAGGACTATCCCAACTGCTGACTCTGTACTCCCCAACGGAATCCATCATCGTGCCAGAATTCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTTCTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTCTATTTCCGAGNCCATCAAAGATATTCAACAAGGAAAAGTCAGTATATGCTAACCTTTTACTCATTTCATATCTTGTCNNNNN] [+] EMBL OSR3041A [GTAAAATATACTAGTTTTACTCATTCCNTTTTAATGAGAATATATAGGGGTACTTAAAATAAGAGTTTATATATATTAATTGCTGAATCTGATTGATTCTACTCACTTCTGTTTGTGTAAATGCAGGGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATTTCCTTCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATCATTGAAAAGGGATGGTGCTTTTCCNGGCGACGGTTACTCAGGGAATGATAACACGGTGTTACCAAAGAGCACTTCTGTTCGTGGNCAGGACTATCCCAACTGCTGACTCTGTACTCCCCAACGGAATCCATCATCGTGCCAGAAT ] [+] EMBL CF196382 [ TCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATCATTGAAAAGGGATGGTCCTTTTCCAGGCGACGGTTACTCAGGGAATGATAACACGGTGTTACCAAAGAGCACTTCTGTTCGTGGCCAGGACTAT CCAACTGCTGACTCTGTACT CCCAACGGAATCCGTCATCGTGCCAGAAATCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTTCTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTCTATTTCCGAGNCCATCAAAGATATTCAACAAGGAAAAGTCAGTATATGCTAACCTTTTACTCATTTCATATCTTGTCNNNNN] consensusID : consensus_13518#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [AGGGGGGGCGNTAGAGCATTAGGCCNATCGGACTCAGGTTNCATTCTAATCCACGACAATCTTATGTGATGGAGTTTGNCAAATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTCGNTGTATCCACAGACACACAACTGGGTTATTACTGTAAATATGTACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCAGCCTTACCTGAATTGAGAAGACCGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTCTTGTTCTGGGAAGCCTTTGGATCCTTACATTATTTCTTGCACTACGCAAAAAAAAA] [+] EMBL CA766713 [AGGGGGGGCGNTAGAGCATTAGGCCNATCGGACTCAGGTTNCATTCTAATCCACGACAATCTTATGTGATGGAGTTTGNCAAATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTCGNTGTATCCACAGACACACAACTGGGTTATTACTGTAAATATGTACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCAGCCTTACCTGAATTGAGAAGACCGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTCTTGTTCTGGGAAGCCTTTGGATCCTTACATTATTTCTTGCACTACGCAAAAAAAAA] consensusID : consensus_13518#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence [GTTATTACTGTAAATGATATGACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCCCGCCTTACCTGGAATTGAGAAGACTGGCGATATAAAATATCGACTGAGATCCCAGCGCCAATACTAGTATGAATGCTGAACTCCCCATATGTGAAAGAATTTTTGTTCTGGGAACACCCT] [+] EMBL BI806322 [GTTATTACTGTAAATGATATGACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCCCGCCTTACCTGGAATTGAGAAGACTGGCGATATAAAATATCGACTGAGATCCCAGCGCCAATACTAGTATGAATGCTGAACTCCCCATATGTGAAAGAATTTTTGTTCTGGGAACACCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 ACCAACCCCATCCCTAATCACCACCACCCCCCCATCCCACCATCGAACCGCCACCAAAAA 60 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 AAGCCGAAGCTCGCTCGCCGCCGCCGCCGCCGCCGGGGACTTCGCCGGAGGGAGGAGAAG 120 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 CCAACCCGCCCGCCCGCGCGCGCGTACGTACGAGGCCTGCTCCTTCCGTCGGAAGGGAAG 180 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 CATCGGGATGGCGTCGATTTCGCCGACGTCTTCATCGGTCGCCGCCCTCCGCGGCCACCC 240 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 GGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATTTCCTTCTC 300 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 ACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATC 360 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 ATTGAAAAGGGATGGTGCTTTTCCAGGCGACGGTTACTCAGGGAATGATAACACGGTGTT 420 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 ACCAAAGAGCACTTCTGTTCGTGGCCAGGACTATCCAACTGCTGACTCTGTACTCCCAAC 480 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 GGAATCCATCATCGTGCCAGAAATCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTT 540 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 CTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTC 600 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TATTTCCGAGGCCATCAAAGATATTCAACAAGGAAAACTTGTGATTGTTGTTGACGATGA 660 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 ATCAAGAGAAAATGAGGGAGATCTTATAATGGCTGCTTCTTTGGTTACCCCAGAGGCCAT 720 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 GGCGTTTGTTGTAAGATATGGCACAGGAATAGTGTGTGTTAGCATGAAAGAAGAGGATCT 780 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TGAAAGATTGAACCTTCCTTTGATGGTTGCAACAAAGGAAAATGAGGAGAAGCTCTGTAC 840 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TGCATTCACTGTTACAGTGGATGCTAAAGAGGGAACAACAACTGGGGTATCTGCAAAGGA 900 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TAGGGCAAAGACAGTTATGACTCTTGCATCCCCTGACTCTAAGCCTGAAGACTTCAATCG 960 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 GCCTGGTCATATTTTCCCTCTGAAATACAGAGAGGGTGGTGTTCTGAAACGAGCTGGACA 1020 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TACTGAAGCATCTGTAGATCTTGCTATGTTAGCTGGGTTACCTCCTGCTGCGGTCTTATG 1080 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGTGTTTGCTGA 1140 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 AAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGA 1200 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 CAGGCTAGTTGAACGTTCATCTGTTGCACGCTTACCTTTGAGATGGGGTAATGTCCGCGC 1260 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TTACTGCTACAGATCTGTTATTGATGGGATAGAGCATATTGCAATGGTGAAAGGGGAGAT 1320 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TGGAGATGGTCAAGGCGTTTTAGTGAGGGTGCACTCCGAATGCCTCACAGGGGACATTTT 1380 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TGGATCAGCAAGATGTGATTGTGGTGATCAGCTTGCCATGGCAATGGAGATGATTGAGAA 1440 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 GGCTGGAAGGGGTGTACTAGTTTATCTTCGTGGACATGAAGGGAGGGGTATTGGTCTCGG 1500 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TCACAAGCTCCGTGCTTATAACCTGCAAGATGACGGGCGCGACACTGTGGAGGCTAATGA 1560 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 AGACCTAGGACTGCCTGTGGATTCACGGGAATATGGCATTGGTGCACAGATATTACGTGA 1620 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TCTGGGGGTCCGTTCAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAA 1680 consensus_13518#1 ------------------------------------------------------------ consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 GGGTTATGGATTGAGCATTGTGGGCAGGGTTCCCTTGGTAACTCCAATCACCTCAGAGAA 1740 consensus_13518#1 --GTAAAATATACTAGTTTTACTCATTCCNTTTTAATGAGAATATATAGGGGTACTTAAA 58 consensus_13518#2 ------------------------------------------------------------ consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGG 1800 consensus_13518#1 ATAAGAGTTTATATATATTAATTGCTGAATCTGATTGATTCTACTCACTTCTGTTTGTGT 118 consensus_13518#2 ---------------------------AGGGGGGGCGNTAGAGCATTAGGCCNATCGGAC 33 consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 CCAAGCTAGCCATCAGACGGGCAGCAATGGTGCCAAAGGGGAGCATTAGGCCAATCGGAC 1860 consensus_13518#1 AAATGCAGGGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATT 178 consensus_13518#2 TCAGGTTN-CATTCTAATCCACGACAATCTTATGTGATGGAGTTTGNCAAATTATGCTAC 92 consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 TCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCAAATTATGCTAC 1920 consensus_13518#1 TCCTTCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTA 238 consensus_13518#2 AACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATG----- 147 consensus_13518#3 ------------------------------------------------------------ consensus_13518#0 AACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATG----- 1975 consensus_13518#1 GCAGCATCATTGAAAAGGGATGGTGCTTTTCCNGGCGACGGTTACTCAGGGAATGATAAC 298 consensus_13518#2 --GGCGTAATAAAAGTATCCCTTTATTCGNTGTA-TCCACAGACACACAACTGGGTTATT 204 consensus_13518#3 ------------------------------------------------------GTTATT 6 consensus_13518#0 --GGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGCCACACAACTGGGTTATT 2033 consensus_13518#1 ACGGTGTTACCAAAGAGCACTTCTGTTCGTGGNCAGGACTATCCCAACTGCTGACTCTGT 358 * * consensus_13518#2 ACTGTAAAT-ATGT-ACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCA---GCC 259 consensus_13518#3 ACTGTAAATGATATGACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCCC--GCC 64 consensus_13518#0 ACTGTAAAT-ATAT-ACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCA---GCC 2088 consensus_13518#1 ACTCCCCA--ACGGAATCCATCATCGTGCCAGAATTCAGTAA-TGCTGGTTTGAAATGTG 415 *** * * * ** * ** * * * * * consensus_13518#2 TTACCTG-AATTGAGAAGACCGGCGATA-AAAATATCGACTGAGATCCAAG----GCAAT 313 consensus_13518#3 TTACCTGGAATTGAGAAGACTGGCGATATAAAATATCGACTGAGATCCCAGCG--CCAAT 122 consensus_13518#0 TTACCTG-AATTGAGAAGACTGGCGATA-AAAATATCGACTGAGATCCAAG----GCAAT 2142 consensus_13518#1 TTGCGGACATGTTCTCAGA-TGAGGACA-AAGACACTGAACAAGATTTGGATAGCCCAAC 473 ** * * * *** * ** * ** * * ** **** *** consensus_13518#2 ACTAGTATGAATCT--AACTCCCAATAT-TGAAAGAATTCTTGTTCTGGGAAGCCTTTGG 370 consensus_13518#3 ACTAGTATGAATGCTGAACTCCCCATATGTGAAAGAATTTTTGTTCTGGGAACACCCT-- 180 consensus_13518#0 ACTAGTATGAATCT--AACTCCCAATAT-TGAAAGAATTTTTGTTCTGGGAAGCCTTTGG 2199 consensus_13518#1 TGAGGGCTTCTCGTCTATTTCCGAGNCCATCAAAGATATTCAACAAGGAAAAGTCAGTAT 533 * * * *** * ***** * * ** * * consensus_13518#2 ATCCTTACATT--ATTTCTTGCACTACGCAAAAAAAAA------- 406 consensus_13518#3 --------------------------------------------- consensus_13518#0 ANCCTTACATT--ATTTCTTGCACTACGCATATGCTGCCAAAAAA 2242 consensus_13518#1 ATGCTAACCTTTTACTCATTTCATATCTTGTCNNNNN-------- 570 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||