cluster # 13520

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Oryza sativa
cluster # 13520 cluster # 13520 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13520#0 length = 1622 sequences # 11

consensus_13520#1 length = 242 sequences # 1
consensus_13520#2 length = 179 sequences # 1

consensusID : consensus_13520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1622
fasta sequence

                              [CTCTCTCTTCCCCTCCCTCCCTTCCCTCTTCGTCCCTCCTCCCCTCCCCCCCGCCGCGATCGAGACGGCGGCGAAACCAACACCGGAATCCGAGGGGGGATCCGCCGCGGCTTCGCTACCCTAGCCCCCGCCCCTTCTCGAATCCGCGCCCTAAAATCCCCTTTGCCTCCCCACCCCACCCCCGGGCGCGCCGCCATCCCCCCCCGCCCCCGCGAGCCCCTCCCGATGGATTTGGATCTGTGGATCTCTAAGGTGAAGGAGGGCCAGCACCTCGCCGAGCACGAGCTCCAGTCCCTCTGCGAATACGTGAAGGAGATCCTCATCGAGGAGTCCAACGTGCAGCCAGTGAACAGCCCGGTGACCGTGTGCGGAGACATCCATGGGCAGTTCCATGACCTGATGAAGCTCTTCGCGACTGGGGGGCATGTGCCCGAGACGAATTATATTTTCATGGGTGATTTTGTAGACCGCGGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAGGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAGGTGTATGGTTTCTACGATGAGTGCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATTGCACCGATGTTTTTGACTACCTTACTCTTTCAGCAATCATTAATGGCACGGTTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCCCTC-GTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGTTCAACCATATTAAC-AATCTCGATCTAG-TTTGCCGAGCTCACCAGCTGGTTCAGGAAGGCTTAAAGTACATGTTTCAGGACAAAGGCCTTGTAACTGTGTGGTCCGCTCCTAATTATTGCTACAGATGTGGAAATGTTGCTTCTATACTAAGCTTCAGTGAGACAATGGAAAGAGAGGTCAAATTCTTCACAGAGACAGAGGAGAATAACCAGATGCGAGGACCGAGGACTGCTGTCCCATATTTCCTCTGACTTCATCAATTGTACAATTTTAGAAGTCATGTTTTTATCTGTAAGGGTTAAAGATGAAGCAGACCTATTTATTGTTGTAGGTCCAGGTCATAGTGCAATCTAATGCGTATGATTTTTCTGTTCTTTTAACCACATGTACAATAGACCATTTGGAGTGTCATCACTCCTGTATTCCTTCTGTGGCGTTGTCAAGTTTTGTTTCTGATTTATTTCGGGTCGACACAGTTTGCCACACAGGAGGTTTGGGCCGTTATTGTGTTATATTTGCAGCTACAGCTTCCCACTCACGTGATCAGATAGGCCTGCCCCGTGACTTCAAAATTTGCATGCGATTTGCGCGTAGGTCGTATCATGTACTACTTTAATATTATAAGTTATTTTGACTTCTTTAGTTTAGCATTTTAAGTTTTATTAAATTTATAGATAAATTTAGTAACCTTGAGAACCTAAATTAGATTCATGAATATACATTGGTAAAAAAAAAA]

[+] EMBL AK068018             [CTCTCTCTTCCCCTCCCTCCCTTCCCTCTTCGTCCCTCCTCCCCTCCCCCCCGCCGCGATCGAGACGGCGGCGAAACCAACACCGGAATCCGAGGGGGGATCCGCCGCGGCTTCGCTACCCTAGCCCCCGCCCCTTCTCGAATCCGCGCCCTAAAATCCCCTTTGCCTCCCCACCCCACCCCCGGGCGCGCCGCCATCCCCCCCCGCCCCCGCGAGCCCCTCCCGATGGATTTGGATCTGTGGATCTCTAAGGTGAAGGAGGGCCAGCACCTCGCCGAGCACGAGCTCCAGTCCCTCTGCGAATACGTGAAGGAGATCCTCATCGAGGAGTCCAACGTGCAGCCAGTGAACAGCCCGGTGACCGTGTGCGGAGACATCCATGGGCAGTTCCATGACCTGATGAAGCTCTTCGCGACTGGGGGGCATGTGCCCGAGACGAATTATATTTTCATGGGTGATTTTGTAGACCGCGGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAGGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAGGTGTATGGTTTCTACGATGAGTGCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATTGCACCGATGTTTTTGACTACCTTACTCTTTCAGCAATCATTAATGGCACGGTTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCCCTC GTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGTTCAACCATATTAAC AATCTCGATCTAG TTTGCCGAGCTCACCAGCTGGTTCAGGAAGGCTTAAAGTACATGTTTCAGGACAAAGGCCTTGTAACTGTGTGGTCCGCTCCTAATTATTGCTACAGATGTGGAAATGTTGCTTCTATACTAAGCTTCAGTGAGACAATGGAAAGAGAGGTCAAATTCTTCACAGAGACAGAGGAGAATAACCAGATGCGAGGACCGAGGACTGCTGTCCCATATTTCCTCTGACTTCATCAATTGTACAATTTTAGAAGTCATGTTTTTATCTGTAAGGGTTAAAGATGAAGCAGACCTATTTATTGTTGTAGGTCCAGGTCATAGTGCAATCTAATGCGTATGATTTTTCTGTTCTTTTAACCACATGTACAATAGACCATTTGGAGTGTCATCACTCCTGTATTCCTTCTGTGGCGTTGTCAAGTTTTGTTTCTGATTTATTTCGGGTCGACACAGTTTGCCACACAGGAGGTTTGGGCCGTTATTGTGTTATATTTGCAGCTACAG                                                                                                                                                                                                                 ]
[+] EMBL OSS1569A             [                                                                                                                                                               CCTTTGCCTCCCCACCCCACCCCCGGGCGCGCCGCCATCCCCCCCCGCCCCCGCGAGCCCCTCCCGATGGATTTGGATCTGTGGATCTCTAAGGTGAAGGAGGGCCAGCACCTCGCCGAGCACGAGCTCCAGTCCCTCTGCGAATACGTGAAGGAGATCCTCATCGAGGAGTCCAACGTGCAGCCAGTGAACAGCCCGGTGACCGTGTGCGGAGACATCCATGGGCAGTTCCATGACCTGATGAAGCTCTTCGCGACTGGGGGGCATGTGCCCGAGACGAATTATATTTTCATGGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB000013             [                                                                                                                                                                                                                                                                                                                                                                                                                                TGGGGGGCATGTGCCCGAGACGAATTATATTTTCATGGGTGATTTTGTAGACCGCGGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAGGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAGGTGTATGGTTTCTACGATGAGTGCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATTGCACCGATGTTTTTGACTACCTTACTCTTTCAGCAATCATTAATGGCACGGTTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCCCTC GTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGTTCAACCATATTAAC AATCTCGATCTAG TTTGCCGAGCTCACCAGCTGGTTCAGGAAGGCTTAAAGTACATGTTTCAGGACAAAGGCCTTGTAACTGTGTGGTCCGCTCCTAATTATTGCTACAGATGTGGAAATGTTGCTTCTATACTACGCTTCAGTGAGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB000325             [                                                                                                                                                                                                                                                                                                                                                                                                                                              CCGAGACGAATTATATTTTCATGGGTGATTTTCCTGACCGCGGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAGGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAGGTGTATGGTTTCTACGATGAGTGCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATTGCACCGATGTTTTTGACTACCTTACTCTTTCAGCAATCATTAATGGCACGGTTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCCCTC GTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGTTCAACCATATTAAC AATCTCGATCTAG TTTGCCGAGCTCACCAGCTGGTTCAGGAAGGCTTAAAGTACATGTTTCAGGACAAAGGCCTTGTAACTGTGTGGTCCGCTCCTAATTATTGCTACAGATGTGGAAATGTTGCTTCTATACTAAGCTTCAGTGAGACAATGGAAAGAGAGGTCAAATTCTTCACAGAGACAGAGGAGAATAACCAGATGCGAGGACCGAGGACTGCTGTCCCATATTTCCTCTGACTTCATCAATTGTACAATTTTAGAAGTCATGTTTTTATCTGTAAGGGTTAAAGATGAAGCAGACCTATTTATTGTTGTAGGTCCAGGTCATAGTGCAATCTAATGCGTATGATTTTTCTGTTCTTT                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA999745             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTTGCTACTAAAAGCGAGGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAGGTGTATGGTTTCTACGATGAGTGCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATTGCACCGATGTTTTTGACTACCTTACTCTTTCAGCAATCATTAATGGCACGGTTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCCCTC GTGGAGCTGGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA882815             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAGGTGTATGGTTTCTACGATGAGTGCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATTGCACCGATGTTTTTGACTACCTTACTCTTTCAGCAATCATTAATGGCACGGTTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCCCTC GTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGTTCAACCATATTAACAAATCTCGATCTAGTTTTGCCGAGCTCACCAGCTGGCTCAGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CA305787             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAGGTGTATGGTTTCTACGATGAGTGCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATTGCACCGATGTTTTTGACTACCTTACTCTTTCAGCAATCATTAATGGCACGGTTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCCCTCNGTGGAGCAGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGTTCAACCATATTAAC AATCTCGATCTAG TTTGCCGAGCTCACCAGCTGGTTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB682730             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAGCAGACAGTTGACACAGGTGTATGGTTTCTACGATGAGTGCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATTGCACCGATGTTTTTGACTACCTTACTCTTTCAGCAATCATTAATGGCACGGTTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCCCTC GTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGTTCAACCATATTAAC AATCTCGATCTAG TTTGCCGAGCTCACCAGCTGGTTCAGGAAGGCTTAAAGTACATGTTTCAGGACAAAGGCCTTGTAACTGTGTGGTCCGCTCCTAATTATTGCTACAGATGTGGAAATGTTGCTTCTATACTAAGCTTCAGTGAGACAATGGAAAGAGAGGTCAAATTCTTCACAGAGACAGAGGAGAATAACCAGATGCGAGGACCGAGGACTGCTGTCCCATATTTCCTCTGACTTCATCAATTGTACAATTTTAGAAGTCATGTTTTTATCTGTAAGGGTTAAAGATGAAGCAGACCTATTTATTGTTGTAGGTCCAGGTCATAGTGCAATCTAATGCGTATGATTTTTCTGTTCTTTTAACCACATGTACAATAGACCATTTGGAGTGTCATCACTCCTGTATTCCTTCTGTGGCGTTGTCAAGTTTTGT                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSR05593A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATCATTAATGGCACGGTTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCCCTC GTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGTTCAACCATATTAAC AATCTCGATCTAG TTTGCCGAGCTCACCAGCTGGTTCAGGAAGGCTTAAAGTACATGTTTCAGGACAAAGGCCTTGTAACTGTGTGGTCCGGTCCTAATTATTGCTACAGATGTGGAAATGTTGCTTCTATACTAAGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU031687             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCAGCTGGTTCAGGAAGGCTTAAAGTNCATGTTTCAGGACAAAGGCCTTGTAACTGTGTGGTCCGCTCCTAATTATTGCTACNGATGTGGAAATGTTGCTTCTATACTAAGCTTCAGTGAGACAATGGAAAGAGAGGTCAAATTCTTCACAGAGACAGAGGAGAATAACCAGATGCGAGGACCGAGGACTGCTGTCCCATATTTCCTCTGACTTCATCAATTGTACAATTTTAGAAGTCATGTTTTTATCTGTAAGGGTTAAAGATGAAGCAGACCTATTTATTGTTGTAGGTCCAGGTCATAGTGCAATCTAATGCGTATGATTTTTCTGTTCTTTTAACCACATGTACAATAGACCATTTGGAGTGTCATCACTCCTGTATTCCTTCaaaaaa                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI812358             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ggaACCGAGGACTGCTGTCCCATATTTCCTCTGACTTCATCAATTGTACAATTTTAGAAGTCATGTTTTTATCTGTAA GGTTAAAGATGAA CAGACCTATTTATTGTTGTAGGTCCAGGTCATAGTGCAATCTAATGCGTTTGATTTTTCTGTTCTTTTAACCACATGTACAATAGACCATTTGGAGTGTCATCACTCCTGTATTCCTTCTGTGGCGTTGTCAAGTTTTGTTTCTGATTTATTTCGGGTCGACACAGTTTGCCACACAGGAGGTTT GGCCGTTATTGTGTTATATTTGCAGCTACAGCTTCCCACTCACGTGATCAGATAGGCCTGCCCCGTGACTTCAAAATTTGCATGCGATTTGCGCGTAGGTCGTATCATGTACTACTTTAATATTATAAGTTATTTTGACTTCTTTAGTTTAGCATTTTAAGTTTTATTAAATTTATAGATAAATTTAGTAACCTTGAGAACCTAAATTAGATTCATGAATATACATTGGTAAAAAAAAAA]




>consensus_13520#0
CTCTCTCTTCCCCTCCCTCCCTTCCCTCTTCGTCCCTCCTCCCCTCCCCCCCGCCGCGAT
CGAGACGGCGGCGAAACCAACACCGGAATCCGAGGGGGGATCCGCCGCGGCTTCGCTACC
CTAGCCCCCGCCCCTTCTCGAATCCGCGCCCTAAAATCCCCTTTGCCTCCCCACCCCACC
CCCGGGCGCGCCGCCATCCCCCCCCGCCCCCGCGAGCCCCTCCCGATGGATTTGGATCTG
TGGATCTCTAAGGTGAAGGAGGGCCAGCACCTCGCCGAGCACGAGCTCCAGTCCCTCTGC
GAATACGTGAAGGAGATCCTCATCGAGGAGTCCAACGTGCAGCCAGTGAACAGCCCGGTG
ACCGTGTGCGGAGACATCCATGGGCAGTTCCATGACCTGATGAAGCTCTTCGCGACTGGG
GGGCATGTGCCCGAGACGAATTATATTTTCATGGGTGATTTTGTAGACCGCGGCTTCAAC
AGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAGGTACCCTGCACACATAACG
CTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAGGTGTATGGTTTCTACGATGAG
TGCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATTGCACCGATGTTTTTGACTAC
CTTACTCTTTCAGCAATCATTAATGGCACGGTTCTTTGTGTTCATGGTGGACTTTCTCCT
GATGTGCGCACTGTTGATCAGATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAA
GGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGC
CCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGTTCAACCATATTAAC
AATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTCAGGAAGGCTTAAAGTACATGTTT
CAGGACAAAGGCCTTGTAACTGTGTGGTCCGCTCCTAATTATTGCTACAGATGTGGAAAT
GTTGCTTCTATACTAAGCTTCAGTGAGACAATGGAAAGAGAGGTCAAATTCTTCACAGAG
ACAGAGGAGAATAACCAGATGCGAGGACCGAGGACTGCTGTCCCATATTTCCTCTGACTT
CATCAATTGTACAATTTTAGAAGTCATGTTTTTATCTGTAAGGGTTAAAGATGAAGCAGA
CCTATTTATTGTTGTAGGTCCAGGTCATAGTGCAATCTAATGCGTATGATTTTTCTGTTC
TTTTAACCACATGTACAATAGACCATTTGGAGTGTCATCACTCCTGTATTCCTTCTGTGG
CGTTGTCAAGTTTTGTTTCTGATTTATTTCGGGTCGACACAGTTTGCCACACAGGAGGTT
TGGGCCGTTATTGTGTTATATTTGCAGCTACAGCTTCCCACTCACGTGATCAGATAGGCC
TGCCCCGTGACTTCAAAATTTGCATGCGATTTGCGCGTAGGTCGTATCATGTACTACTTT
AATATTATAAGTTATTTTGACTTCTTTAGTTTAGCATTTTAAGTTTTATTAAATTTATAG
ATAAATTTAGTAACCTTGAGAACCTAAATTAGATTCATGAATATACATTGGTAAAAAAAA
AA

consensusID : consensus_13520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [ACAGAGGAGAATAACCATCTCTCGAGGACCGTGGCCTTCTCTCCCATATTTCCTCTGACTTCATCAATTTTACAATTTTAGAAGTCATCTTTTTCTTTGTAAGTGCTCAAGATCAAGCCCACCTATTTATTCTTGTAGGTCCAGGTCATAATGCCATCTCACCCGTATGTGGGGTGGGGAGGCAAAGGGGATTTTAGGGCGCGGATTCGAGAAGGGGCGGGGGCTAGGGTAGCGAAGCCGCG]

[-] EMBL CB682729             [ACAGAGGAGAATAACCATCTCTCGAGGACCGTGGCCTTCTCTCCCATATTTCCTCTGACTTCATCAATTTTACAATTTTAGAAGTCATCTTTTTCTTTGTAAGTGCTCAAGATCAAGCCCACCTATTTATTCTTGTAGGTCCAGGTCATAATGCCATCTCACCCGTATGTGGGGTGGGGAGGCAAAGGGGATTTTAGGGCGCGGATTCGAGAAGGGGCGGGGGCTAGGGTAGCGAAGCCGCG]




>consensus_13520#1
ACAGAGGAGAATAACCATCTCTCGAGGACCGTGGCCTTCTCTCCCATATTTCCTCTGACT
TCATCAATTTTACAATTTTAGAAGTCATCTTTTTCTTTGTAAGTGCTCAAGATCAAGCCC
ACCTATTTATTCTTGTAGGTCCAGGTCATAATGCCATCTCACCCGTATGTGGGGTGGGGA
GGCAAAGGGGATTTTAGGGCGCGGATTCGAGAAGGGGCGGGGGCTAGGGTAGCGAAGCCG
CG

consensusID : consensus_13520#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [CGAGCTCGTCCCCTTTAGTATTATTTCCTCCTCTCTCHAANNGACCDRCCTCCCTTCCCTCTTCGTACCCTCCTCCCCTCCCCCCCGCCGCGATCGAGACGGCGGCGAAACCAACACCGGAATCCGAGGGGGGATCCGCCGCGGTTTCGTACCCTARAACCCGCCCCTTCTCGAATCCG]

[+] EMBL BE229372             [CGAGCTCGTCCCCTTTAGTATTATTTCCTCCTCTCTCHAANNGACCDRCCTCCCTTCCCTCTTCGTACCCTCCTCCCCTCCCCCCCGCCGCGATCGAGACGGCGGCGAAACCAACACCGGAATCCGAGGGGGGATCCGCCGCGGTTTCGTACCCTARAACCCGCCCCTTCTCGAATCCG]




>consensus_13520#2
CGAGCTCGTCCCCTTTAGTATTATTTCCTCCTCTCTCHAANNGACCDRCCTCCCTTCCCT
CTTCGTACCCTCCTCCCCTCCCCCCCGCCGCGATCGAGACGGCGGCGAAACCAACACCGG
AATCCGAGGGGGGATCCGCCGCGGTTTCGTACCCTARAACCCGCCCCTTCTCGAATCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13520#0      ------------------------------------------------------------
consensus_13520#2      -------------------------------CGAGCTCGTCCCC----TTTAGTATTATT 25
consensus_13520#1      ACAGAGGAGAATAACCATCTCTCGAGGACCGTGGCCTTCTCTCCCATATTTCCTCTGACT 60
                                                                                   

consensus_13520#0      -----CTCTCTCTTCCC----CTCCCTCCCTTCCCTCTTC--GT-CCC----TCCTCCCC 44
consensus_13520#2      TCCTCCTCTCTCHAANNG-ACCDRCCTCCCTTCCCTCTTC--GTACCC----TCCTCCCC 78
consensus_13520#1      TCATCAATTTTACAATTTTAGAAGTCATCTTTTTCTTTGTAAGTGCTCAAGATCAAGCCC 120
                               * *              *  * **  ** *    ** * *    **   ***

consensus_13520#0      TCCCCCCCGCCGCGATCGAGAC-GGCGGCGAAACCAAC--ACCGGAATCCGAGG-GGGGA 100
consensus_13520#2      TCCCCCCCGCCGCGATCGAGAC-GGCGGCGAAACCAAC--ACCGGAATCCGAGG-GGGGA 134
consensus_13520#1      ACCTATTTATTCTTGTAGGTCCAGGTCATAATGCCATCTCACCCGTATGTGGGGTGGGGA 180
                        **            * *   * **     *  *** *  *** * **  * ** *****

consensus_13520#0      TCCGCCGCGGCTTCGCTACCCTAGCCCCCGCCCCTTCTCGAATCCGCGCCCTAAAATCCC 160
consensus_13520#2      TCCGCCGCGGTTTCG-TACCCTARAACCCGCCCCTTCTCGAATCCG-------------- 179
consensus_13520#1      GGCAAAGGGGATTTTAGGGCGCGGATTCGAGAAGGGGCGGGGGCTAGGGTAGCGAAGCCG 240
                         *   * ** **      *       *           *   *                

consensus_13520#0      CTTTGCCTCCCCACCCCACCCCCGGGCGCGCCGCCATCCCCCCCCGCCCCCGCGAGCCCC 220
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      CG---------------------------------------------------------- 242
                                                                                   

consensus_13520#0      TCCCGATGGATTTGGATCTGTGGATCTCTAAGGTGAAGGAGGGCCAGCACCTCGCCGAGC 280
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      ACGAGCTCCAGTCCCTCTGCGAATACGTGAAGGAGATCCTCATCGAGGAGTCCAACGTGC 340
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      AGCCAGTGAACAGCCCGGTGACCGTGTGCGGAGACATCCATGGGCAGTTCCATGACCTGA 400
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      TGAAGCTCTTCGCGACTGGGGGGCATGTGCCCGAGACGAATTATATTTTCATGGGTGATT 460
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      TTGTAGACCGCGGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGA 520
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      GGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAGG 580
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      TGTATGGTTTCTACGATGAGTGCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATT 640
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      GCACCGATGTTTTTGACTACCTTACTCTTTCAGCAATCATTAATGGCACGGTTCTTTGTG 700
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      TTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGATTCGGACGATTGATCGCA 760
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      ATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAA 820
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      TAGAGACATGGGCTGTTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAG 880
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      CTGAGTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTCAGG 940
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      AAGGCTTAAAGTACATGTTTCAGGACAAAGGCCTTGTAACTGTGTGGTCCGCTCCTAATT 1000
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      ATTGCTACAGATGTGGAAATGTTGCTTCTATACTAAGCTTCAGTGAGACAATGGAAAGAG 1060
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      AGGTCAAATTCTTCACAGAGACAGAGGAGAATAACCAGATGCGAGGACCGAGGACTGCTG 1120
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      TCCCATATTTCCTCTGACTTCATCAATTGTACAATTTTAGAAGTCATGTTTTTATCTGTA 1180
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      AGGGTTAAAGATGAAGCAGACCTATTTATTGTTGTAGGTCCAGGTCATAGTGCAATCTAA 1240
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      TGCGTATGATTTTTCTGTTCTTTTAACCACATGTACAATAGACCATTTGGAGTGTCATCA 1300
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      CTCCTGTATTCCTTCTGTGGCGTTGTCAAGTTTTGTTTCTGATTTATTTCGGGTCGACAC 1360
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      AGTTTGCCACACAGGAGGTTTGGGCCGTTATTGTGTTATATTTGCAGCTACAGCTTCCCA 1420
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      CTCACGTGATCAGATAGGCCTGCCCCGTGACTTCAAAATTTGCATGCGATTTGCGCGTAG 1480
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      GTCGTATCATGTACTACTTTAATATTATAAGTTATTTTGACTTCTTTAGTTTAGCATTTT 1540
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      AAGTTTTATTAAATTTATAGATAAATTTAGTAACCTTGAGAACCTAAATTAGATTCATGA 1600
consensus_13520#2      ------------------------------------------------------------
consensus_13520#1      ------------------------------------------------------------
                                                                                   

consensus_13520#0      ATATACATTGGTAAAAAAAAAA 1622
consensus_13520#2      ----------------------
consensus_13520#1      ----------------------