cluster # 13522

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Oryza sativa
cluster # 13522 cluster # 13522 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13522#0 length = 592 sequences # 11

consensus_13522#1 length = 423 sequences # 2

consensusID : consensus_13522#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 592
fasta sequence

                              [GCAGCAGCAGCAGCAGCAGCAGTAGCCATCTCTTCTTCCTCTCGCCTCCGTTTCCGCCGTCGCCTGCTCGGTTCCAGCTGAGACCGTGCGCGCGCGCGAGGGAGCAACCTCGAGAGGAAGGGGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGTCGCCGCCTCGGCCGCCACCGT-GGCGTTCGCCGCCGAGGCCCCGGCTCCTGCGCCCACCAGCGCCGCTCCCGCGGCCGTCGCGCCGGCCATCGGCGC-GGCGC-TCGGCGCCA-CCGTGGTCTCGTTCTTCGCCTACTACCTGCAGTGAGCCCAGCCGGAGGAGGAAGAGAGGAAGAGGAGGAGATGGATGCATGGCCATGGCTACTAAACCGATCCAAACACGCGCGATAATGTGGGTGCTTTGATTTGTGCCAACTTTGATGCCTCGTCTTCTTTCTTCTCTTTTTATAATGGGTTGTATTTTTGATGCACCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGATATTGTACTATTATTCACCATTTGTTTGGATTAAATTAAGATATTGGAATTACTGGCAAAAA]

[+] EMBL AK109216             [GCAGCAGCAGCAGCAGCAGCAGTAGCCATCTCTTCTTCCTCTCGCCTCCGTTTCCGCCGTCGCCTGCTCGGTTCCAGCTGAGACCGTGCGCGCGCGCGAGGGAGCAACCTCGAGAGGAAGGGGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGTCGCCGCCTCGGCCGCCACCGT GGCGTTCGCCGCCGAGGCCCCGGCTCCTGCGCCCACCAGCGCCGCTCCCGCGGCCGTCGCGCCGGCCATCGGCGC GGCGC TCGGCGCCA CCGTGGTCTCGTTCTTCGCCTACTACCTGCAGTGAGCCCAGCCGGAGGAGGAAGAGAGGAAGAGGAGGAGATGGATGCATGGCCATGGCTACTAAACCGATCCAAACACGCGCGATAATGTGGGTGCTTTGATTTGTGCCAACTTTGATGCCTCGTCTTCTTTCTTCTCTTTTTATAATGGGTTGTATTTTTGATGCACCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGATATTGTACTATTATTCACCATTTGTTTGGATTAAATTAAGATATTGGA              ]
[+] EMBL AU070049             [        AGCAGCAGCAGCAGTAGCCATCTCTTCTTCCTCTCGCCTCCGTTTCCGCCGTCGCCTGCTCGGTTCCAGCTGAGACCGTGCGCGCGCG GAGGGAGCAACCTCGAGAGGAAGGGGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGTCGCCGCCTCGGCCGCCACCGT GGCGTTCG CGCCGAGGCCCCGGCTCCTGCGCCCACCAGCGCCGCTCCCGCGNCNGTCGCGCCGGCCATC GCGG GGCGCTTCGGCG CA CCGTGGTCTCGTTCTTCG CTACTANCTGCAGTGAGCCCAGCCGGAGGAGGAAGAGAGGAAGAGGAGGAGATGGATTCATGG CATGG TACTAAACCGATCCAAACANG GGGATAATGTGGGTG TTTGATTTGTGCaa                                                                                                                                                                                    ]
[+] EMBL AU070126             [        AGCAGCAGCAGCAGTAGCCATCTCTTCTTCCTCTCGCCTCCGTTTCCGCCGTCGCCTGCTCGGTTCCAGCTGAGACCGTGCGCGCGCGCGAGGGAGCAACCTCGAGAGGAAGGGGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGTCGCCGCCTCGGCCGCCACCGT GGCGTTCGCCGCCGAGGCCCCGGCTCCTGCGCCCACCAGCGCCGCTCCCGCGCCCGTCGCGCCGGNCATC GNG  GGCGT TCGGCG CA CCGTGGTCTCGTTCTTCG CTACTACCTGCAGTGAGCCCAGCCGGAGGAGGAAGAGAGGAAGAGGAGGAGAT                                                                                                                                                                                                                                                         ]
[+] EMBL AU064151             [        AGCAGCAGCAGCAGTAGCCATCTNTTCTTCCTCTCGCCTCCGTTTCCGCCGTCGCCTGCTCGGTTCCAGCTGAGACCGTGCGCGCGCGCNAGGGAGCAACCTCGAGAGGAAGGGGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGTCGCCGCCTCGGCCGCCACCGT GGCGTTCGCCGCCGAGGCCCCGGCTCCTGCGCCCACCAGCGCCGCTC                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU064026             [        AGCAGCAGCAGCAGTAGCCATCTNTTCTTCCTCTCGCCTCCGTTTCCGCCGTCGCCTGCTCGGTTCCAGCTGAGACCGTGCGCGCGCGCNAGGGAGCAACCTCGAGAGGAAGGGGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGTCGCCGCCTCGGCCGCCACCGT GGCGTTCGCCGCCGAGG CCCGGNTCCTGCGCCCACCAGCGCCGC                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL BI305829             [                                             CTCCGTTTCCGCCGTCGCCTGCTCGGTTCCAGCTGAGACCGTGCGCGCGCGCGAGGGAGCAACCTCGAGAGGAAGGGGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGTCGCCGCCTCGGCCGCCACCGT GGCGTTCGCCGCCGAGGCCCCGGTTCTTGCGCCCACCAGCGCCGCTCCCGCGGCCGTCGCGCCGGCCATCGGCGC TGCGC TCGGCGCCA CCGTGGTCTCGTTTTTCGCCTACTACCTGCAGTGAGCCCAGCCGGAGGAGGAAGAGAGGAAGAGGAGGAGATGGATGCATGGCCATGGCTACTAAACCGATCCAAACACGCGCGATAATGTGGGTGCTTTGATTTGTGCCAACTTTGATGCCTCGTCTTCTTTCTTCTCTTTTTATAATGGGTTGTATTTTTGATGCACCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGATATTGTACTATTATTCACCATTTGTTTGGATTAAATTAAGATATTGGAA             ]
[+] EMBL AU182877             [                                                                                                                                                                      CCTCGGCCGCCACCGT GGCGTTCGCCGCCGAGGCCCCGGCTCCTGCGCCCACCAGCGCCGCTCCCGCGGCCGTCGCGCCGGCCATCGGCGC GGCGC TCGGCGCCA CCGTGGTCTCGTTCTTCGCCTACTACCTGCAGTGAGCCCAGCCGGAGGAGGAAGAGAGGAAGAGGAGGAGATGGATGCATGGCCATGGCTACTAAACCGATCCAAACACGCGCGATAATGTGGGTGCTTTGATTTGTGCCAACTTTGATGCCTCGTCTTCTTTCTTCTCTTTTTATAATGGGTTGTATTTTTGATGCACCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGATATTGTACTATTATTCACCATTTGTTTGGATTAAATTAAGATATTGGAATTACTGGCAAAAA]
[+] EMBL AU182552             [                                                                                                                                                                      CCTCGGCCGCCACCGT GGCGTTCGCCGCCGAGGCCCCGGCTCCTGCGCCCACCAGCGCCGCTCCCGCGGCCGTCGCGCCGGCCATCGGCGC GGCGC TCGGCGCCA CCGTGGTCTCGTTCTTCGCCTACTACCTGCAGTGAGCCCAGCCGGAGGAGGAAGAGAGGAAGAGGAGGAGATGGATGCATGGCCATGGCTACTAAACCGATCCAAACACGCGCGATAATGTGGGTGCTTTGATTTGTGCCAACTTTGATGCCTCGTCTTCTTTCTTCTCTTTTTATAATGGGTTGTATTTTTGATGCACCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGATATTGTACTATTATTCACCATTTGTTTGGATTAAATTAAGATATTGGAATTACTGGCAAAAA]
[+] EMBL AU182524             [                                                                                                                                                                         CGGCCGCCACCGT GGCGTTCGCCGCCGAGGCCCCGGCTCCTGCGCCCACCAGCGCCGCTCCCGCGGCCGTCGCGCCGGCCATCGGCGC GGCGC TCGGCGCCA CCGTGGTCTCGTTCTTCGCCTACTACCTGCAGTGAGCCCAGCCGGAGGAGGAAGAGAGGAAGAGGAGGAGATGGATGCATGGCCATGGCTACTAAACCGATCCAAACACGCGCGATAATGTGGGTGCTTTGATTTGTGCCAACTTTGATGCCTCGTCTTCTTTCTTCTCTTTTTATAATGGGTTGTATTTTTGATGCACCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGATATTGTACTATTATTCACCATTTGTTTGGATTAAATTAAGATATTGGAATTACTGGCAAAAA]
[+] EMBL AU172917             [                                                                                                                                                                                 ACCGTGGGGGTTCCCCCCCAAGGCCCCGGTTCTTGNGCCCACAAGNGCCGCTCCCGCGGCCGTNGCGCCGGCCATCGGCGCGGGCGC TCGGCGCCA CCGTGGTCTCGTTCTTCGCCTACTACCTGCAGTGAGCCCAGCCGGAGGAGGAAGAGAGGAAGAGGAGGAGATGGATGCATGGCCATGGCTACTAAACCGATCCAAACACGCGCGATAATGTGGGTGCTTTGATTTGTGCCAACTTTGATGCCTCGTCTTCTTTCTTCTCTTTTTATAATGGGTTGTATTTTTGATGCACCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGATATTGTACTATTATTCACCATTTGTTTGGATTAAATTAAGATATTGGAATTACTGGCAAAAA]
[+] EMBL AU184002             [                                                                                                                                                                                                                                                               CGC GGCGC TCGGCGCCACCCGTGGTCTCGTTCTTCGCCTACTACCTGCAGTGAGCCCAGCCGGAGGAGGAAGAGAGGAAGAGGAGGAGATGGATGCATGGCCATGGCTACTAAACCGATCCAAACACGCGCGATAATGTGGGTGCTTTGATTTGTGCCAACTTTGATGCCTCGTCTTCTTTCTTCTCTTTTTATAATGGGTTGTATTTTTGATGCACCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGATATTGTACTATTATTCACCATTTGTTTGGATTAAATTAAGATATTGGAATTAaaaaaaa   ]




>consensus_13522#0
GCAGCAGCAGCAGCAGCAGCAGTAGCCATCTCTTCTTCCTCTCGCCTCCGTTTCCGCCGT
CGCCTGCTCGGTTCCAGCTGAGACCGTGCGCGCGCGCGAGGGAGCAACCTCGAGAGGAAG
GGGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGTCGCCGCCTCGGCCGCCACC
GTGGCGTTCGCCGCCGAGGCCCCGGCTCCTGCGCCCACCAGCGCCGCTCCCGCGGCCGTC
GCGCCGGCCATCGGCGCGGCGCTCGGCGCCACCGTGGTCTCGTTCTTCGCCTACTACCTG
CAGTGAGCCCAGCCGGAGGAGGAAGAGAGGAAGAGGAGGAGATGGATGCATGGCCATGGC
TACTAAACCGATCCAAACACGCGCGATAATGTGGGTGCTTTGATTTGTGCCAACTTTGAT
GCCTCGTCTTCTTTCTTCTCTTTTTATAATGGGTTGTATTTTTGATGCACCGGTTTGATT
TCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGATATTGTACTA
TTATTCACCATTTGTTTGGATTAAATTAAGATATTGGAATTACTGGCAAAAA

consensusID : consensus_13522#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 423
fasta sequence

                              [GCCGAGGGCCCCAGGGTCTTGGGCCCCACCAGCGGGCCGGGTCCCGCGGGCCTTTGCGGCCTGGCCATTTGGCGCTGCGGCTCGGCGCGCACCCGTGGTTTCGTTTTTTGCCTAGCTATCCTGCACGTGAGGTCCCACGCCGGAGGAGGAAGAGAGGAAAAAGAGGAGAATGGATGCATGGCCACTGGGTACTAAACCGATCCAACACCGCGCGATAATGTGGGTGCTTTGATTTGGGCCCACTTTGATGCCTCGTTTTCTTTTTTTTTTTTTTATAAATGGGTTGTATTTTTGAAGCCCCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGATATTGTACTATTATTCACCCTTTGTTTGGATTAAATTAAAGATATTGGAATTAAAAAAAAAAA]

[-] EMBL CB964573             [GCCGAGGGCCCCAGGGTCTTGGGCCCCACCAGCGGGCCGGGTCCCGCGGGCCTTTGCGGCCTGGCCATTTGGCGCTGCGGCTCGGCGCGCACCCGTGGTTTCGTTTTTTGCCTAGCTATCCTGCACGTGAGGTCCCACGCCGGAGGAGGAAGAGAGGAAAAAGAGGAGAATGGATGCATGGCCACTGGGTACTAAACCGATCCAACACCGCGCGATAATGTGGGTGCTTTGATTTGGGCCCACTTTGATGCCTCGTTTTCTTTTTTTTTTTTTTATAAATGGGTTGTATTTTTGAAGCCCCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGATATTGTACTATTATTCACCCTTTGTTTGGATTAAATTAAAGATATTGGAA             ]
[+] EMBL AU031354             [                                                                                                                                                                                                                                                                                                                                                                GGAATGGATATTGTACTATTATTCACCATTTGTTTGGATTAAATT AAGATATTGGNATTAAAAAAAAAAA]




>consensus_13522#1
GCCGAGGGCCCCAGGGTCTTGGGCCCCACCAGCGGGCCGGGTCCCGCGGGCCTTTGCGGC
CTGGCCATTTGGCGCTGCGGCTCGGCGCGCACCCGTGGTTTCGTTTTTTGCCTAGCTATC
CTGCACGTGAGGTCCCACGCCGGAGGAGGAAGAGAGGAAAAAGAGGAGAATGGATGCATG
GCCACTGGGTACTAAACCGATCCAACACCGCGCGATAATGTGGGTGCTTTGATTTGGGCC
CACTTTGATGCCTCGTTTTCTTTTTTTTTTTTTTATAAATGGGTTGTATTTTTGAAGCCC
CGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTTGAAGGGAATGGA
TATTGTACTATTATTCACCCTTTGTTTGGATTAAATTAAAGATATTGGAATTAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13522#0      GCAGCAGCAGCAGCAGCAGCAGTAGCCATCTCTTCTTCCTCTCGCCTCCGTTTCCGCCGT 60
consensus_13522#1      ------------------------------------------------------------
                                                                                   

consensus_13522#0      CGCCTGCTCGGTTCCAGCTGAGACCGTGCGCGCGCGCGAGGGAGCAACCTCGAGAGGAAG 120
consensus_13522#1      ------------------------------------------------------------
                                                                                   

consensus_13522#0      GGGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGTCGCCGCCTCGGCCGCCACC 180
consensus_13522#1      ------------------------------------------------------------
                                                                                   

consensus_13522#0      GTGGCGTTCGCCGCCGAGGCCCC--GGCTCCTGCGCCC-ACCAGCG---CCGCTCCCGCG 234
consensus_13522#1      ------------GCCGAGGGCCCCAGGGTCTTGGGCCCCACCAGCGGGCCGGGTCCCGCG 48
                                   ******* ***  ** ** ** **** *******   * * *******

consensus_13522#0      G-CCGTCGCG--CCGGCCATC-GGCGCGGCG-CTCGGCGC-CACC-GTGGTCTCGTTCTT 287
consensus_13522#1      GGCCTTTGCGGCCTGGCCATTTGGCGCTGCGGCTCGGCGCGCACCCGTGGTTTCGTTTTT 108
                       * ** * ***  * ******  ***** *** ******** **** ***** ***** **

consensus_13522#0      CGCCTA-CTA-CCTGCA-GTGAG--CCCA-GCCGGAGGAGGAAGAGAGGAAGAGGAGGAG 341
consensus_13522#1      TGCCTAGCTATCCTGCACGTGAGGTCCCACGCCGGAGGAGGAAGAGAGGAAAAAGAGGAG 168
                        ***** *** ****** *****  **** ********************* * ******

consensus_13522#0      A-TGGATGCATGGCCA-TGGCTACTAAACCGATCCAAACACGCGCGATAATGTGGGTGCT 399
consensus_13522#1      AATGGATGCATGGCCACTGGGTACTAAACCGATCCAACACCGCGCGATAATGTGGGTGCT 228
                       * ************** *** ****************   ********************

consensus_13522#0      TTGATTTGTGCCAACTTTGATGCCTCGTCTTCTTTCTTCTCTTTTTATAA-TGGGTTGTA 458
consensus_13522#1      TTGATTTGGGCCCACTTTGATGCCTCGTTTTCTTTTTTTTTTTTTTATAAATGGGTTGTA 288
                       ******** *** *************** ****** ** * ********* *********

consensus_13522#0      TTTTTGATGCACCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTT 518
consensus_13522#1      TTTTTGAAGCCCCGGTTTGATTTCGGTGCTTTGATTTCTCATATTTCGTCCACCCTATTT 348
                       ******* ** *************************************************

consensus_13522#0      GAAGGGAATGGATATTGTACTATTATTCACCATTTGTTTGGATTAAATTAA-GATATTGG 577
consensus_13522#1      GAAGGGAATGGATATTGTACTATTATTCACCCTTTGTTTGGATTAAATTAAAGATATTGG 408
                       ******************************* ******************* ********

consensus_13522#0      AATTACTGGCAAAAA 592
consensus_13522#1      AATTAAAAAAAAAAA 423
                       *****     *****