These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2372 fasta sequence [CTAAATAAAAAAACAACAGAAAAAAAAGAAAACGACGGCGTCTTCACTCCTCTCCAGTCTGCGCCACCACGTCCGCGTCCATCCGCCACTGCCGCACCTCCATCCGCGCGCCGCCCCTCCTCCCTCCCGGGACGGCCTCTACCCTCGCCGCCGCCGCCGCCCCCTCCCCACCCCACCCCGGCCGCCCGGGAGGAGCCACCTCCCACCCGTGACGAGACGGCTTCAACCCCTCGCCCGCCGCTTCTTCCCCCGGGAAGGGCGGTGCCCGCGTCGCCGGCGGCGAGCTTCTCCGACTCCGGCGACTGATTCGTCAGAACGTTCCGGTTCCTGATTGATTGATTGATTGATGGATTGATTGGCCGGGATATGCTGATACCATTGAGAGGAATTGTTGACTGATTGATTCCTACCTGGTGATGGCTTCCAAGGCTGTTCCTGATGTAGTCACCGACAAGAAATGCGATAAAACCATGGCGGCATCCTCTGAAATGTCGCAATCCCAAGAAGTTATTTCGAGAGGGGGTAAACTTGGGACTGCTTCATCCAGAGAGACTCTGCTGGGGGATGTAGCCACGTCCAGTGGGGTGAAAGAACAAGATAAGGATAGCTGTTCTGTTGATGAATCTGTGAAGCTGGATGGCAATGAAGATGCTGAGAAAAGCTCGTTGCGCGGCAGCGTTAAGGATAGCTCGGCTTCTGCCAAAGGCAGCGACAGGGCAAGCAGCCTGACAAAGGTGAGTGGCAGCACGAAGGTGAGCGACCATGCTGCTGACATTGTTGGGAGCAGCAAGAGCAGTGTTTATCGAGCCAGTGCTGGCAGTGATGTGAGTGATGAGAGCACCTGCAGCAGTATATGCAGCAGCGCGAGCAAACCTCACAAGTCGAATGATTCAAGGTGGGAAGCGATACAGATGGTCCGAACCAAAGAAGGTTCGCTGGGGTTAGGCCATTTCAGGCTACTTAAGAGGCTTGGTTGTGGTGACATTGGCAGTGTTTATTTGTCGGAGCTTAGTGGAACAAAGTGCTACTTCGCTATGAAGATTATGGACAA-GGCGTCTCTAGCGAGCCGCAAAAAGCTACTGAGAGCCCAGACTGAAAGGGAGATATTGCAGTGCCTGGACCATCCTTTTTTGCCAACATTGTACACTCATTTTGAGACTGATAAGTTCTCATGCCTA-GTAATGGAGTTTTGCCCTGGAGGAGACCTGCACACCCTAAGGCAAAAGCAACCGGGGAAGTTTTTTCCGGAACAAGCTGCCAAGTTTTATGTGGCTGAGGTGCTTCTTGCTCTAGAATACCTGCATATGCTTGGCATCATATATCGGGACCTTAAGCCAGAAAATGTTCTTGTGAGAGAAGATGGCCACATCATGCTGTCTGATTTTGATTTGTCCCTAAGATGTGCTGTGAGCCCTACCCTTCTGAAATCCTCAAACCCTGGGGTAGATCCAAACCAAAAGGGTAATCCATCTTATTGTGTACAGCCAGTGTGCATCGAGCCAGCTTGTATCCAACCCTCTTGTGTTACAACGACCACATGCTTCGCTCCACGCTTTTTCTCCTCCAAATCCAAAAAGGAGAAGAAGGCAAAAACAGACATTGCAAGTCAGGTCAGACCACTTCCTGAGCTTGTTGCAGAACCTACAGATGCAAGATCGATGTCATTTGTTGGCACCCATGAGTACTTGGCACCTGAGACTATAAAGGGTGAGGGGCATGGAAGTGCTGTCGACTGGTGGACTTTTGGCATATTCTTGTATGAACTTCTTTTTGGCAAGACACCTTTCAAAGGTTCAGGGAATAGAGCAACATTGTTCAATGTTGTCGGACAGTCCCTAAGGTTCCCAGAATCACCTGTTGTGAGTTTTGCTGCAAAGGACCTTATTCGGGGTTTGCTTATTAAGGAACCACAACATCGTTTGGCTTATAAGCGTGGAGCGACAGAAATAAAGCAACATCCCTTTTTTGAAGGTGTTAACTGGGCCTTGATAAGGTGTGCAACTCCTCCAGATATTCCCAAGCCAGTTGAGATCCCTAGGTCAGTAGCCTCAACCAGTCAAAAGGCTACAACAACTGCTGAGAAAGGTTCAGACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTATGTG-CAAGTTGTAAAGTTCTTTTCTTTTTCCTAGACCTTTTCTGGATTCTTATAACTTGATATTCAGTTGGCCTATGCTCCCATTTCTGTTCTTAAAAAACTTTTGCATTTCGTGGACCTCCATCAATCGCATTAGATTAGATGGGAGACCTTTCTGTTTAGAACCTGTAATCCTCCTTTTTTTTTTTCACTGAGCATTAGGTTTCCTTGAACAACAAATAAATAATTTC] [+] EMBL AK070835 [CTAAATAAAAAAACAACAGAAAAAAAAGAAAACGACGGCGTCTTCACTCCTCTCCAGTCTGCGCCACCACGTCCGCGTCCATCCGCCACTGCCGCACCTCCATCCGCGCGCCGCCCCTCCTCCCTCCCGGGACGGCCTCTACCCTCGCCGCCGCCGCCGCCCCCTCCCCACCCCACCCCGGCCGCCCGGGAGGAGCCACCTCCCACCCGTGACGAGACGGCTTCAACCCCTCGCCCGCCGCTTCTTCCCCCGGGAAGGGCGGTGCCCGCGTCGCCGGCGGCGAGCTTCTCCGACTCCGGCGACTGATTCGTCAGAACGTTCCGGTTCCTGATTGATTGATTGATTGATGGATTGATTGGCCGGGATATGCTGATACCATTGAGAGGAATTGTTGACTGATTGATTCCTACCTGGTGATGGCTTCCAAGGCTGTTCCTGATGTAGTCACCGACAAGAAATGCGATAAAACCATGGCGGCATCCTCTGAAATGTCGCAATCCCAAGAAGTTATTTCGAGAGGGGGTAAACTTGGGACTGCTTCATCCAGAGAGACTCTGCTGGGGGATGTAGCCACGTCCAGTGGGGTGAAAGAACAAGATAAGGATAGCTGTTCTGTTGATGAATCTGTGAAGCTGGATGGCAATGAAGATGCTGAGAAAAGCTCGTTGCGCGGCAGCGTTAAGGATAGCTCGGCTTCTGCCAAAGGCAGCGACAGGGCAAGCAGCCTGACAAAGGTGAGTGGCAGCACGAAGGTGAGCGACCATGCTGCTGACATTGTTGGGAGCAGCAAGAGCAGTGTTTATCGAGCCAGTGCTGGCAGTGATGTGAGTGATGAGAGCACCTGCAGCAGTATATGCAGCAGCGCGAGCAAACCTCACAAGTCGAATGATTCAAGGTGGGAAGCGATACAGATGGTCCGAACCAAAGAAGGTTCGCTGGGGTTAGGCCATTTCAGGCTACTTAAGAGGCTTGGTTGTGGTGACATTGGCAGTGTTTATTTGTCGGAGCTTAGTGGAACAAAGTGCTACTTCGCTATGAAGATTATGGACAA GGCGTCTCTAGCGAGCCGCAAAAAGCTACTGAGAGCCCAGACTGAAAGGGAGATATTGCAGTGCCTGGACCATCCTTTTTTGCCAACATTGTACACTCATTTTGAGACTGATAAGTTCTCATGCCTA GTAATGGAGTTTTGCCCTGGAGGAGACCTGCACACCCTAAGGCAAAAGCAACCGGGGAAGTTTTTTCCGGAACAAGCTGCCAAGTTTTATGTGGCTGAGGTGCTTCTTGCTCTAGAATACCTGCATATGCTTGGCATCATATATCGGGACCTTAAGCCAGAAAATGTTCTTGTGAGAGAAGATGGCCACATCATGCTGTCTGATTTTGATTTGTCCCTAAGATGTGCTGTGAGCCCTACCCTTCTGAAATCCTCAAACCCTGGGGTAGATCCAAACCAAAAGGGTAATCCATCTTATTGTGTACAGCCAGTGTGCATCGAGCCAGCTTGTATCCAACCCTCTTGTGTTACAACGACCACATGCTTCGCTCCACGCTTTTTCTCCTCCAAATCCAAAAAGGAGAAGAAGGCAAAAACAGACATTGCAAGTCAGGTCAGACCACTTCCTGAGCTTGTTGCAGAACCTACAGATGCAAGATCGATGTCATTTGTTGGCACCCATGAGTACTTGGCACCTGAGACTATAAAGGGTGAGGGGCATGGAAGTGCTGTCGACTGGTGGACTTTTGGCATATTCTTGTATGAACTTCTTTTTGGCAAGACACCTTTCAAAGGTTCAGGGAATAGAGCAACATTGTTCAATGTTGTCGGACAGTCCCTAAGGTTCCCAGAATCACCTGTTGTGAGTTTTGCTGCAAAGGACCTTATTCGGGGTTTGCTTATTAAGGAACCACAACATCGTTTGGCTTATAAGCGTGGAGCGACAGAAATAAAGCAACATCCCTTTTTTGAAGGTGTTAACTGGGCCTTGATAAGGTGTGCAACTCCTCCAGATATTCCCAAGCCAGTTGAGATCCCTAGGTCAGTAGCCTCAACCAGTCAAAAGGCTACAACAACTGCTGAGAAAGGTTCAGACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTATGTG CAAGTTGTAAAGTTCTTTTCTTTTTCCTAGACCTTTTCTGGATTCTTATAACTTGATATTCAGTTGGCCTATGCTCCCATTTCTGTTCTTAAGTTCCTTTTGCATTTCGTGGACCTCCATCAATCGCATTAGATTAGATGGGAGACCTTTCTGTTTAGAACCTGTAATCCTCCTTTTTTTTTTTCACTGAGCATTAGGTTTCCTTGAACAACAAATAAATAATTTC] [+] EMBL CB639719 [ TCTGCGCCACCACGTCCGCGTCCATCCGCCACTGCCGCACCTCCATCCGCGCGCCGCCCCTCCTCCCTCCCGGGACGGCCTCTACCCTCGCCGCCGCCGCCGCCCCCTCCCCACCCCACCCCCGCCGCCCGGGAGGAGCCACCTCCCACCCGTGACGAGACGGCTTCAACCCCTCGCCCGCCGCTTCTTCCCCCGGGAAGGGCGGTGCCCGCGTCGCCGGCGGCGAGCTTCTCCGACTCCGGCGACTGATTCGTCAGAACGTTCCGGTTCCTGATTGATTGATTGATTGATGGATTGATTGGCCGGGATATGCTGATACCATTGAGAGGAATTGTTGACCGATTGATTCCTACC ] [+] EMBL CF324401 [ AGCAGTATATGCAGCAGCGCGAGCAAACCTCACAAGTCGAATGATTCAAGGTGGGAAGCGATACAGATGGTCCGAACCAAAGAAGGTTCGCTGGGGTTAGGCCATTTCAGGCTACTTAAGAGGCTTGGTTGTGGTGACATTGGCAGTGTTTATTTGTCGGAGCTTAGTGGAACAAAGTGCTACTTCGCTATGAAGATTATGGACAAGGGCGTCTCTAGCGAGCCGCAAAAAGCTACTGAGAGCCCAGACTGAAAGGGAGATATTGCAGTGCCTGGACCATCCTTTTTTGCCAACATTGTACACTCATTTTGAGACTGATAAGTTCTCATGCCTANGTAATGGAGTTTTGCCCTGGAGGAGACCTGCACACCCTAAGGCAAAAGCAACCGGGGAAGTTTTTTCCGGAACAAGCTGCCAAGTTTTATGTGGCTGAGGTGCTTCTTGCTCTAG ATACCTGCATATGCTTGGCATCATATATCG ] [-] EMBL CB643769 [ ATCTTATTGTGTACAGCCAGTGTGCATCGAGCCAGCTTGTATCCAACCCTCTTGTGTTACAACGACCACATGCTTCGCTCCACGCTTTTTCTCCTCCAAATCCAAAAAGGAGAAGAAGGCAAAAACAGACATTGCAAGTCAGGTCAGACCACTTCCTGAGCTTGTTGCAGAACCTACAGATGCAAGATCGATGTCATTTGTTGGCACCCATGAGTACTTGGCACCTGAGATTATAAAGGGTGAGGGGCATGGAAGTGCTGTCGACTGGTGGACTTTTGGCATATTCTTGTATGAACTTCTTTTTGGCAAGACACCTTTCAAAGGTTCAGGGAATAGAGCAACATTGTTCAATGTTGTCGGACAGTCCCTAAGGTTCCCAGAATCACCTGTTGTGAGTTTTGCTGCAAAGGACCTTATTCGGGGTTTGCTTATTAAGGAACCACAACATCGTTTGGCTTATAAGCGTGGAGCGACAGAAATAAAGCAACATCCCTTTTTTGAAGGTGTTAACTGGGCCTTGATAAGGTGTGCAACTCCTCCAGATATTCCCAAGCCAGTTGAGATCCCTAGGTCAGTAGCCTCAACCAGTCAAAAGGCTACAACAACTGCTGAGAAAGGTTCAGACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTATGTG CAAGTTGTAAAGTTCTTTTCTTTTTCCTAGACCTTTTCTGGATTAAGGTAACTTGATATTCAGTTGGCCTATGCTCCCAccctaaaag ] [+] EMBL BQ906102 [ CCTTTCAAAGGTTCAGGGAATAGAGCAACATTGTTCAATGTTGTCGGACAGTCCCTAAGGTTCCCAGAATCACCTGTTGTGAGTTTTGCTGCAAAGGACCTTATTCGGGGTTTGCTTATTAAGGAACCACAACATCGTTTGGCTTATAAGCGTGGAGCGACAGAAATAAAGCAACATCCCTTTTTTG AGGTGTTAACTGGGCCTTGATAAGGTGTGCGACTCCTCCAGATATTCCCAAGCCAGTTGAGATCCCTAGGTCAGTAGCCTCAACAAGTCAAAAGGCTACAACAACTGCTGAGAAAGGTTCAGACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTANGTGCCAAGTTGTAAAGTTCTNTTCTTTTTCCTAGACCTTTTCTGGATTCTTATAACTGGATATTCAGTTGCCCTATGCTCCCATTTCTGTTCTTAAAAAAa ] [+] EMBL C97780 [ cgGGCTTATAAGCGTGGAGCGACAGAAATAAAGCAACATCCCTTTTTTGAAGGTGTTAACTGGGCCTTGATAAGGTGTGCAACTCCTCCAGATATTCCCAAGCCAGTTGAGATCCCTAGGTCAGTAGCCTCAACCAGTCAAAAGGCTACAACAACTGCTGAGAAAGGTTCAGACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTATGTG CAAGTTGTAAAGTTCTTTTCTTTTTCCTAGACCTTTTCTGGATTCTTATAACTTGATATTCAGTTGGCCTATGCTCCCATTTCTGTTCTTAAAAAA ] [+] EMBL C22455 [ cgGGCTTATAAGCGTGGAGCGACAGAAATAAAGCAACATCCCTTTTTTGAAGGTGTTAACTGGGCCTTGATAAGGTGTGCAACTCCTCCAGATATTCCCAAGCCAGTTGAGATCCCTAGGTCAGTAGCCTCAACCAGTCAAAAGGCTACAACAACTGCTGAGAAAGGTTCAGACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTATGTG CAAGTTGTAAAGTTCTTTTCTTTTTCCTAGACCTTTTCTGGATTCTTATAACTTGATATTCAGTTGGCCTATGCTCCCATTTCTGTTCTTAAAAAA ] consensusID : consensus_13535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [TGAAGGAGTAGAAAGAGAGCCCAGACTGAAAGGGAGATATTGCAGTGCCTGGACCATCCTTTTTTGCCAACATTGTACACTCATTTTGAGACTGATAAGTTCTCATGCCTAGCAATGGAGTTTTGCCCTGGAGGAGACCTGCACACCCTAAGGCAAAAGCAACCGGGGAAGTTTTTTCCGGAACAAGCTGCCAAGTTTTATGTGGCTGAGGTGCTTCTTGCTCTAGAATACCTGCATATGCTTGGCATCATATATCGGGACCTTAAGCCAGAAAATGTTCTTGTGAGAGAAGATGGCCACATCATGCTGTCTGATTTTGATTTGTCCCTAAGATGTGCTGTGAGCCCTACCCTTCTGAAATCCTCAAACCCTGGGGTAGATCCAAACCAAAAGGGTAATCCATCTTATTGTGTACAGCCAGTGTGCATCGAGCCAGCTTGTATCCAACCCTCTTGTGTTACAACGACCACATGCTTCGCTCCACGCTTTTTCTCCTCCAAATCCAAAAAGGAGAAGAAGGCAAAAACAGACATTGCAAGTCAGGTCAGACCACTTCCTGAGCTTGTTGCAGAACCTACAGATGCAAGATCGATGTCATTTGTTGGCACCCATGAGTACTTGGCACCTGAGATTATAAAGGGTGAGGGGATTGGAAGTGCTGTCGACTGGTGGACTTTTGGCATATTCTTGT] [+] EMBL CF310584 [TGAAGGAGTAGAAAGAGAGCCCAGACTGAAAGGGAGATATTGCAGTGCCTGGACCATCCTTTTTTGCCAACATTGTACACTCATTTTGAGACTGATAAGTTCTCATGCCTAGCAATGGAGTTTTGCCCTGGAGGAGACCTGCACACCCTAAGGCAAAAGCAACCGGGGAAGTTTTTTCCGGAACAAGCTGCCAAGTTTTATGTGGCTGAGGTGCTTCTTGCTCTAGAATACCTGCATATGCTTGGCATCATATATCGGGACCTTAAGCCAGAAAATGTTCTTGTGAGAGAAGATGGCCACATCATGCTGTCTGATTTTGATTTGTCCCTAAGATGTGCTGTGAGCCCTACCCTTCTGAAATCCTCAAACCCTGGGGTAGATCCAAACCAAAAGGGTAATCCATCTTATTGTGTACAGCCAGTGTGCATCGAGCCAGCTTGTATCCAACCCTCTTGTGTTACAACGACCACATGCTTCGCTCCACGCTTTTTCTCCTCCAAATCCAAAAAGGAGAAGAAGGCAAAAACAGACATTGCAAGTCAGGTCAGACCACTTCCTGAGCTTGTTGCAGAACCTACAGATGCAAGATCGATGTCATTTGTTGGCACCCATGAGTACTTGGCACCTGAGATTATAAAGGGTGAGGGGATTGGAAGTGCTGTCGACTGGTGGACTTTTGGCATATTCTTGT] consensusID : consensus_13535#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence [GCGCCACCACGTCCGCGTCCATCCGCCACTGCCGCACCTCCATCCGCGCGCCGCCCCTCCTCCCTCCCGGGACGGCCTCTACCCTCGCCGCCGCCGCCGCCCCCTCCCCACCCCACCCCCGCCGCCCGGGAGGAGCCACCTCCCACCCGTGACGAGACGGCTTCAACCCCTCGCCCGCCGCTTCTTCCCCCGGGAAGGGCGGTGCCCGCGTCGCCGGCGGCGAGCTTCTCCGACTCCGGCGACTGATTCGTCAGAACGTTCCGGTTCCTGATTGATTGATTGATTGATGGATTGATTGGCCGGGATATGCTGATACCATTGAGAGGAATTGTTGACTGATTGATTCCTACCTGGTGATGGCTTCCAAGGCTGTTCCTGATGTAGTCACCGACAAGAAATGCGATAAAACCATGGCGGCATCCTCTGAAATGTCGCAATCCCAAGAAGTTATTTCGAGAGGGGGTAAACTTGGGACTGCTTCATCCAGAGAGACTCTGCTGGGGGATGTAGCCACGTCCAGTGGGGTGAAAGAACAAGATAAGGATAGCTCGGCTTCTGCCAAAGGCAGCGACAGGGCAAGCACCCTGACAAAGGTGAGTGGCAGCACGAAGGTGAGCGACCATGCTGCTGACATTGTTGGGAGCAACCAGAGCAGTGTTTATCGAGC] [+] EMBL CB643768 [GCGCCACCACGTCCGCGTCCATCCGCCACTGCCGCACCTCCATCCGCGCGCCGCCCCTCCTCCCTCCCGGGACGGCCTCTACCCTCGCCGCCGCCGCCGCCCCCTCCCCACCCCACCCCCGCCGCCCGGGAGGAGCCACCTCCCACCCGTGACGAGACGGCTTCAACCCCTCGCCCGCCGCTTCTTCCCCCGGGAAGGGCGGTGCCCGCGTCGCCGGCGGCGAGCTTCTCCGACTCCGGCGACTGATTCGTCAGAACGTTCCGGTTCCTGATTGATTGATTGATTGATGGATTGATTGGCCGGGATATGCTGATACCATTGAGAGGAATTGTTGACTGATTGATTCCTACCTGGTGATGGCTTCCAAGGCTGTTCCTGATGTAGTCACCGACAAGAAATGCGATAAAACCATGGCGGCATCCTCTGAAATGTCGCAATCCCAAGAAGTTATTTCGAGAGGGGGTAAACTTGGGACTGCTTCATCCAGAGAGACTCTGCTGGGGGATGTAGCCACGTCCAGTGGGGTGAAAGAACAAGATAAGGATAGCTCGGCTTCTGCCAAAGGCAGCGACAGGGCAAGCACCCTGACAAAGGTGAGTGGCAGCACGAAGGTGAGCGACCATGCTGCTGACATTGTTGGGAGCAACCAGAGCAGTGTTTATCGAGC] [+] EMBL CA752644 [ CATCCGCCACTGCCGCACCTCCATCCACGCGCCGCCCCTCCTCCCTCCCGGGACGGCCTCTACCCTCGCCGCCGCCGCCGCCCCCTCCCCACCCCACCCCCGCCGCCCGGGAGGAGCCACCTCCCACCCGTGACGAGACGGCTTCAACCCCTCGCCCGCCGCTTCTTCCCCCGGGAAGGGCGGTGCCCGCGTCGCCGGCGGCGAGCTTCTCCGACTCCGGCGACTGATTCGTCAGAACGTTCCGGTTCCTGATTGATTGATTGATTGATGGATTGATTGGCCGGGATATGCTGATACCATTGAGAGGAATTGTTGACTGATTGATTCCTACCTGGTGATGGCTTCCAAGGCTGTTCCT ] consensusID : consensus_13535#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 429 fasta sequence [ATAGAGCAACATTGTTCAATGTTGTCGGACAGTCCCTAAGGTTCCCAGAATCACCTGTTGTGAGTTTTGCTGCAAAGGACCTTATTCGGGGTTTGCTTATTAAGGAACCACAACA-TCGTTTGGCTTATAAGCGTGGAGCGACAGAAATAAAGCAACATCCCTTTTTTGAAGGTGTTAACTGGGCCTTGATAAGGTGTGCAACTCCTCCAGATATTCCCAAGCCAGTTGAGATCCCTAGGTCAGTAGCCTCAACCAGTCAAAAGGCTACAACAACTGCTGAGAAAGGTTCAGACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTATGTGCAAGTTGTAAAGTTCTTTTCTTTTTCCTAGACCTTTTCTGGATTCTTATAACTTGATATTCAGTTGGCCTTNNNNAAAAAAAA] [+] EMBL CF311151 [ATAGAGCAACATTGTTCAATGTTGTCGGACAGTCCCTAAGGTTCCCAGAATCACCTGTTGTGAGTTTTGCTGCAAAGGACCTTATTCGGGGTTTGCTTATTAAGGAACCACAACA TCGTTTGGCTTATAAGCGTGGAGCGACAGAAATAAAGCAACATCCCTTTTTTGAAGGTGTTAACTGGGCCTTGATAAGGTGTGCAACTCCTCCAGATATTCCCAAGCCAGTTGAGATCCCTAGGTCAGTAGCCTCAACCAGTCAAAAGGCTACAACAACTGCTGAGAAAGGTTCAGACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTATGTGCAAGTTGTAAAGTTCTTTTCTTTTTCCTAGACCTTTTCTGGATTCTTATAACTTGATATTCAGTTGGCCTTNNNNAAAAAAA ] [-] EMBL CF311150 [ TAGAGCAACATTGTTCAATGTTGTCGGACAGTCCCTAAGGTTCCCAGAATCACCTGTTGTGAGTTTTGCTGCAAAGGACCTTATTCGGGGTTTGCTTATTAAGGAACCACAACATTCGTTTGGCTTATAAGCGTGGAGCGACAGAAATAAAGCAACATCCCTTTTTTGAAGGTGTTAACTGGGCCTTGATAAGGTGTGCAACTCCTCCAGATATTCCCAAGCCAGTTGAGATCCCTAGGTCAGTAGCCTCAACCAGTCAAAAGGCTACAACAACTGCTGAGAAAGGTTCAGACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTATGTGCAAGTTGTAAAGTTCTTTTCTTTTTCCTAGACCTTTTCTGGATTCTTATAACTTGATATTCAGTTGGCCTAAAAAAAAAAAAA] consensusID : consensus_13535#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 140 fasta sequence [GACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTATGTACAAGTTGTAAAGTTCTTTTCTTTTTCCAAGCCCTTTTTTGGATTCTTATAACTTAAAATACAGCCGCCCCTAAAAAAAAAAAAA] [-] EMBL CF310585 [GACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTATGTACAAGTTGTAAAGTTCTTTTCTTTTTCCAAGCCCTTTTTTGGATTCTTATAACTTAAAATACAGCCGCCCCTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 CTAAATAAAAAAACAACAGAAAAAAAAGAAAACGACGGCGTCTTCACTCCTCTCCAGTCT 60 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 GCGCCACCACGTCCGCGTCCATCCGCCACTGCCGCACCTCCATCCGCGCGCCGCCCCTCC 120 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 TCCCTCCCGGGACGGCCTCTACCCTCGCCGCCGCCGCCGCCCCCTCCCCACCCCACCCCG 180 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 GCCGCCCGGGAGGAGCCACCTCCCACCCGTGACGAGACGGCTTCAACCCCTCGCCCGCCG 240 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 CTTCTTCCCCCGGGAAGGGCGGTGCCCGCGTCGCCGGCGGCGAGCTTCTCCGACTCCGGC 300 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 GACTGATTCGTCAGAACGTTCCGGTTCCTGATTGATTGATTGATTGATGGATTGATTGGC 360 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 CGGGATATGCTGATACCATTGAGAGGAATTGTTGACTGATTGATTCCTACCTGGTGATGG 420 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 CTTCCAAGGCTGTTCCTGATGTAGTCACCGACAAGAAATGCGATAAAACCATGGCGGCAT 480 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 CCTCTGAAATGTCGCAATCCCAAGAAGTTATTTCGAGAGGGGGTAAACTTGGGACTGCTT 540 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 CATCCAGAGAGACTCTGCTGGGGGATGTAGCCACGTCCAGTGGGGTGAAAGAACAAGATA 600 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 AGGATAGCTGTTCTGTTGATGAATCTGTGAAGCTGGATGGCAATGAAGATGCTGAGAAAA 660 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 GCTCGTTGCGCGGCAGCGTTAAGGATAGCTCGGCTTCTGCCAAAGGCAGCGACAGGGCAA 720 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 GCAGCCTGACAAAGGTGAGTGGCAGCACGAAGGTGAGCGACCATGCTGCTGACATTGTTG 780 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 GGAGCAGCAAGAGCAGTGTTTATCGAGCCAGTGCTGGCAGTGATGTGAGTGATGAGAGCA 840 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 CCTGCAGCAGTATATGCAGCAGCGCGAGCAAACCTCACAAGTCGAATGATTCAAGGTGGG 900 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 AAGCGATACAGATGGTCCGAACCAAAGAAGGTTCGCTGGGGTTAGGCCATTTCAGGCTAC 960 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 TTAAGAGGCTTGGTTGTGGTGACATTGGCAGTGTTTATTTGTCGGAGCTTAGTGGAACAA 1020 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 -----------------------------------------------TGAAGGAGTAGAA 13 consensus_13535#0 AGTGCTACTTCGCTATGAAGATTATGGACAAGGCGTCTCTAGCGAGCCGCAAAAAGCTAC 1080 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 AGAGAGCCCAGACTGAAAGGGAGATATTGCAGTGCCTGGACCATCCTTTTTTGCCAACAT 73 consensus_13535#0 TGAGAGCCCAGACTGAAAGGGAGATATTGCAGTGCCTGGACCATCCTTTTTTGCCAACAT 1140 consensus_13535#2 ----------------------GCGCCACCACGTCCGCGTCCATCCGCCACTGCCGCACC 38 consensus_13535#3 -----------------------------------------ATAGAGCAACATTGTTCAA 19 consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 TGTACACTCATTTTGAGACTGATAAGTTCTCATGCCTAGCAATGGAGTTTTGCCCTGGAG 133 consensus_13535#0 TGTACACTCATTTTGAGACTGATAAGTTCTCATGCCTAGTAATGGAGTTTTGCCCTGGAG 1200 consensus_13535#2 TCCATCCGCGCGCCGCCCCTCCTCCCTCCCGGGACGGCCTCTACCCTCGCCGCCGCCGCC 98 consensus_13535#3 TGTTGTCGGACAGTCC----CTAAGGTTCCCAGAATCACCTGTTGTGAGTTTTGCTGCAA 75 consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 GAGACCTGCACACCCTAAGGCAAAAGCAACCGGGGAAGTTTTTTCCGGAACAAGCTGCCA 193 consensus_13535#0 GAGACCTGCACACCCTAAGGCAAAAGCAACCGGGGAAGTTTTTTCCGGAACAAGCTGCCA 1260 consensus_13535#2 GCCCCCTCCCCACCCCACCCCCGCCGC-CCGGGAGGAGCCACCTCCCACCCGTGACGAGA 157 consensus_13535#3 AGGACCTTATTCGGGGTTTGCTTATTAAGGAACCACAACATCGTTTGGCTTATAAGCGTG 135 consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 AGTTTTATGTGGCTGAGGTGCTTCTTGCTCTAGAATACCTGCATATG-CTTGGCATCATA 252 consensus_13535#0 AGTTTTATGTGGCTGAGGTGCTTCTTGCTCTAGAATACCTGCATATG-CTTGGCATCATA 1319 consensus_13535#2 CGGCTTCAACCCCTCGCCCGCCGCTTCTTCCCCCGGGAAGGGCGGTGCCCGCGTCGCCGG 217 consensus_13535#3 GAGCGACAGAAATAAAGCAACATCCCTTTTTTGAAGGTGTTAACTGGGCCTTGATAAGGT 195 consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 TATCGG--GACCTTAAGCCAGAAAATGTTCTTGTGAGAG--AAGATGGCCACATCATGCT 308 consensus_13535#0 TATCGG--GACCTTAAGCCAGAAAATGTTCTTGTGAGAG--AAGATGGCCACATCATGCT 1375 consensus_13535#2 CGGCGAGCTTCTCCGACTCCGGCGACTGATTCGTCAGAACGTTCCGGTTCCTGATTGATT 277 consensus_13535#3 GTGCAACT--CCTCCAGATATTCCCAAGCCAGTTGAGATCCCT---AGGTCAGTAGCCTC 250 consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 GTCTGATT--TTGATTTGT-CCCTAAGATGTGCTGTGAGCCCT---ACCCTTCTGAAATC 362 consensus_13535#0 GTCTGATT--TTGATTTGT-CCCTAAGATGTGCTGTGAGCCCT---ACCCTTCTGAAATC 1429 consensus_13535#2 GATTGATTGATGGATTGATTGGCCGGGATATGCTGATACCATTGAGAGGAATTGTTGACT 337 consensus_13535#3 AACCAGTCAAAAGGCTACAACAACTGCTGAGAAAGGTTC--AGACAATTATCTTGAATTC 308 consensus_13535#4 ------------------------------------------GACAATTATCTTGAATTC 18 consensus_13535#1 CTCAAACCCTGGGGTAGATCCAAACCAAAAGGGTAATCC--ATCTTATTGTGTACAGCCA 420 consensus_13535#0 CTCAAACCCTGGGGTAGATCCAAACCAAAAGGGTAATCC--ATCTTATTGTGTACAGCCA 1487 consensus_13535#2 GATTGATTCCTACCTGGTGATGGCTTCCAAGGCTGTTCCTGATGTAGTCACCGACAAGAA 397 * * consensus_13535#3 GATTTCTTTTAGTGGAGTCTTATAAAATCAT-TTATGTGCAAGTTGTAAAGTTCTTTTCT 367 consensus_13535#4 GATTTCTTTTAGTGGAGTCTTATAAAATCAT-TTATGTACAAGTTGTAAAGTTCTTTTCT 77 consensus_13535#1 GTGTGCATCGAGCCAGCTTGTATCCAACCCTCTTGTGTTACAACGACCACATGCTTCGCT 480 consensus_13535#0 GTGTGCATCGAGCCAGCTTGTATCCAACCCTCTTGTGTTACAACGACCACATGCTTCGCT 1547 consensus_13535#2 ATGCGATAAAACCATGGCGGCATCCTCTGAAATGTCGCAATCCCAAGAAGTTATTTCGAG 457 * ** * * * * ** consensus_13535#3 TTTTCCTAGACCT----TTTCTGGATTCTTATAACTTGATAT----TCAGTTGGCCTTNN 419 consensus_13535#4 TTTTCCAAGCCCT----TTTTTGGATTCTTATAACTTAAAAT----ACAGCCGCCCCTAA 129 consensus_13535#1 CCACGCTTTTTCT----CCTCCAAATCCAAAAAGGAGAAGAAGGCAAAAACAGACATTGC 536 consensus_13535#0 CCACGCTTTTTCT----CCTCCAAATCCAAAAAGGAGAAGAAGGCAAAAACAGACATTGC 1603 consensus_13535#2 AGGGGGTAAACTTGGGACTGCTTCATCCAGAGAGACTCTGCTGGGGGATGTAGCCACGTC 517 * ** * * * * * consensus_13535#3 NNAAAAAAAA-------------------------------------------------- 429 consensus_13535#4 AAAAAAAAAAA------------------------------------------------- 140 consensus_13535#1 AAGTCAGGTCAGACCACTTCCTGAGCTTGTTGCAGAACCTACAGATGCAAGATCGATGTC 596 consensus_13535#0 AAGTCAGGTCAGACCACTTCCTGAGCTTGTTGCAGAACCTACAGATGCAAGATCGATGTC 1663 consensus_13535#2 CAGTGGGGTGAAAGAACAAGATAAGGATAGCTCGGCTTCTGCCAAAGGCAGCGACAGGGC 577 consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ATTTGTTGGCACCCATGAGTACTTGGCACCTGAGATTATAAAGGGTGAGGGGATTGGAAG 656 consensus_13535#0 ATTTGTTGGCACCCATGAGTACTTGGCACCTGAGACTATAAAGGGTGAGGGGCATGGAAG 1723 consensus_13535#2 AAGCACCCTGACAAAGGTGAGTGGCAGCACGAAGGTGAGCGACCATGCTGCTGACATTGT 637 consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 TGCTGTCGACTGGTGGACTTTTGGCATATTCTTGT------------------------- 691 consensus_13535#0 TGCTGTCGACTGGTGGACTTTTGGCATATTCTTGTATGAACTTCTTTTTGGCAAGACACC 1783 consensus_13535#2 TGGGAGCAACCAGAGCAGTGTTTATCGAGC------------------------------ 667 consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 TTTCAAAGGTTCAGGGAATAGAGCAACATTGTTCAATGTTGTCGGACAGTCCCTAAGGTT 1843 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 CCCAGAATCACCTGTTGTGAGTTTTGCTGCAAAGGACCTTATTCGGGGTTTGCTTATTAA 1903 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 GGAACCACAACATCGTTTGGCTTATAAGCGTGGAGCGACAGAAATAAAGCAACATCCCTT 1963 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 TTTTGAAGGTGTTAACTGGGCCTTGATAAGGTGTGCAACTCCTCCAGATATTCCCAAGCC 2023 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 AGTTGAGATCCCTAGGTCAGTAGCCTCAACCAGTCAAAAGGCTACAACAACTGCTGAGAA 2083 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 AGGTTCAGACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTAT 2143 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 GTGCAAGTTGTAAAGTTCTTTTCTTTTTCCTAGACCTTTTCTGGATTCTTATAACTTGAT 2203 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 ATTCAGTTGGCCTATGCTCCCATTTCTGTTCTTAAAAAACTTTTGCATTTCGTGGACCTC 2263 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------------------ consensus_13535#4 ------------------------------------------------------------ consensus_13535#1 ------------------------------------------------------------ consensus_13535#0 CATCAATCGCATTAGATTAGATGGGAGACCTTTCTGTTTAGAACCTGTAATCCTCCTTTT 2323 consensus_13535#2 ------------------------------------------------------------ consensus_13535#3 ------------------------------------------------- consensus_13535#4 ------------------------------------------------- consensus_13535#1 ------------------------------------------------- consensus_13535#0 TTTTTTTCACTGAGCATTAGGTTTCCTTGAACAACAAATAAATAATTTC 2372 consensus_13535#2 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||