cluster # 13544

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Oryza sativa
cluster # 13544 cluster # 13544 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13544#0 length = 2089 sequences # 8

consensus_13544#1 length = 696 sequences # 4
consensus_13544#2 length = 333 sequences # 1

consensusID : consensus_13544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2089
fasta sequence

                              [TGAGACGGACAGCGTAATGAAAAAGTTTCAGGGAGTAATTTTGCAGCTGGAACAAGCTCTGTGCGACATTCCGTACAATGAATTGGATATATCAGATGAAGTTAGAGAGCAGGTTGAGTTAGTGCACGCACAGCTCAAAAGAGCAAAAGAACGGATTGATATGCCTGACGATGAATTCTACAATGATCTACTATCTGTATATGACAAGAACTATGACCCAAGTGCAGAACTGGCTATTCTTGGAAGATTGTCAGAAAAGCTACACTTGATGACAATCACCGATCTCACGCAAGAATCACTCGCCTTACATGAGATGGTCGCATCCGGCGGTGGTCAGGACCCAGGAGAACACATTGAGAGAATGTCAATGCTACTGAAGAAGATTAAGGATTTTGTGCAAACACAGAACCCTGACATGGGGCCTCCTATGGCTTCCAGGGTATTGGATTCAAATGGGGATTCAAGGCCTATAACCATTCCTGACGAGTTCCGATGTCCAATTTCTCTTGAGCTGATGAAGGATCCTGTTATAGTGTCTACAGGGCAGACATATGAGCGGGCATGCATTGAGAAATGGATAGCATCAGGCCATCATACCTGCCCAACCACGCAACAGAAGATGTCAACCTCAGCATTGACGCCAAACTATGTCCTTAGAAGTCTCATTTCCCAGTGGTGTGAAACCAATGGGATGGAGCCACCAAAGCGCTCAACCCAGCCTAACAAGCCTACGCCTGCATGCTCTTCGAGTGAACGTGCTAACATCGATGCTCTGCTATCTAAGTTATGCTCTCCAGACACTGAGGAGCAGAGATCAGCTGCTGCAGAGCTTCGCCTCCTTGCAAAGCGGAATGCAAACAACCGGATTTGCATTGCTGAGGCAGGTGCCATTCCCTTGCTATTGAGTCTGCTGTCCTCATCTGACCTACGGACTCAAGAACATGCAGTTACTGCCCTTCTGAACCTCTCCATACATGAGGACAATAAGGCAAGCATCATATCATCTGGTGCTGTCCCAAGCATAGTCCATGTTCTGAAGAATGGCAGCATGGAGGCACGGGAGAATGCTGCGGCCACACTTTTTAGTCTCTCAGTGATTGATGAATATAAAGTGACAATTGGAGGGATGGGGGCTATCCCTGCGCTTGTAGTGCTGTTAGGCGAGGGTAGCCAGCGGGGGAAGAAGGATGCAGCAGCAGCTCTCTTCAACTTGTGTATATACCAAGGGAACAAGGGACGAGCGATTCGAGCTGGCCTTGTGCCACTCATCAT-GGGGCTGGTGACCAACCCCACAGGAGCGCTCATGGATGAGGCTATGGCAATACTCTCCATACTATCCAGCCACCCTGAGGGCAAGGCAGCGATTGGGGCGGCAGAGCCTGTCCCTGTGCTTGTGGAGATGATCGGAAGCGGAACCCCGAGAAATCGAGAGAATGCTGCGGCTGTCATGCTACATCTGTGCAGTGGAGAGCACCATCTTGTGCATTTAGCTCGTGCGCAGGAGTGCGGGATCATGGTCCCGTTGCGGGAGCTGGCTTTGAACGGCACCGATAGGGGGAAGAGGAAGGCTGTGCAGCTGCTCGAGCGGATGAGCAGATTCCTAGTCCAGCAACAAGAGGAACAGGAGTCCCAGTCGCAAGCCTCCGCGCAGGTCCCTCCTCAGGCCACCCCTGAGCAGGTCCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCGGA-TT-GAGTAGCATCCTGGTCACTTTGCATTCTGCTCATGATTCATGGCATGCCGACCAATTGAGGTTTTTCCACAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCAGGTTGTGAGAATTTGTTTAGGCAGCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTAAACATGCAGCTGCTATATGTAGACAACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGATTTGAGCAGTAAAAAAAAAAAAA]

[+] EMBL CB680406             [TGAGACGGACAGCGTAATGAAAAAGTTTCAGGGAGTAATTTTGCAGCTGGAACAAGCTCTGTGCGACATTCCGTACAATGAATTGGATATATCAGATGAAGTTAGAGAGCAGGTTGAGTTAGTGCACGCACAGCTCAAAAGAGCAAAAGAACGGATTGATATGCCTGACGATGAATTCTACAATGATCTACTATCTGTATATGACAAGAACTATGACCCAAGTGCAGAACTGGCTATTCTTGGAAGATTGTCAGAAAAGCTACACTTGATGACAATCACCGATCTCACGCAAGAATCACTCGCCTTACATGAGATGGTCGCATCCGGCGGTGGTCAGGACCCAGGAGAACACATTGAGAGAATGTCAATGCTACTGAAGAAGATTAAGGATTTTGTGCAAACACAGAACCCTGACATGGGGCCTCCTATGGCTTCCAGGGTATTGGATTCAAATGGGGATTCAAGGCCTATAACCATTCCTGACGAGTTCCGATGTCCAATTTCTCTTGAGCTGATGAAGGATCCTGTTATAGTGTCTACAGGGCAGACATATGAGCGGGCATGCATTGAGAAATGGATAGCATCAGGCCATCATACCTGCCCAACCACGCAACAGAAGATGTCAACCTCAGCATTGACGCCAAACTATGTCCTTAGAAGTCTCATTTCCCAGTGGTGTGAAACCAATGGGATGGAGCCACCAAAGCGCTCAACCCAGCCTAACAAGCCTACGCCTGCATGCTCTTCGAGTGAACGTGCTAACATCGATGCTCTGCTATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK105835             [                                                                                                                                                                                                     TATATGACAAGAACTATGACCCAAGTGCAGAACTGGCTATTCTTGGAAGATTGTCAGAAAAGCTACACTTGATGACAATCACCGATCTCACGCAAGAATCACTCGCCTTACATGAGATGGTCGCATCCGGCGGTGGTCAGGACCCAGGAGAACACATTGAGAGAATGTCAATGCTACTGAAGAAGATTAAGGATTTTGTGCAAACACAGAACCCTGACATGGGGCCTCCTATGGCTTCCAGGGTATTGGATTCAAATGGGGATTCAAGGCCTATAACCATTCCTGACGAGTTCCGATGTCCAATTTCTCTTGAGCTGATGAAGGATCCTGTTATAGTGTCTACAGGGCAGACATATGAGCGGGCATGCATTGAGAAATGGATAGCATCAGGCCATCATACCTGCCCAACCACGCAACAGAAGATGTCAACCTCAGCATTGACGCCAAACTATGTCCTTAGAAGTCTCATTTCCCAGTGGTGTGAAACCAATGGGATGGAGCCACCAAAGCGCTCAACCCAGCCTAACAAGCCTACGCCTGCATGCTCTTCGAGTGAACGTGCTAACATCGATGCTCTGCTATCTAAGTTATGCTCTCCAGACACTGAGGAGCAGAGATCAGCTGCTGCAGAGCTTCGCCTCCTTGCAAAGCGGAATGCAAACAACCGGATTTGCATTGCTGAGGCAGGTGCCATTCCCTTGCTATTGAGTCTGCTGTCCTCATCTGACCTACGGACTCAAGAACATGCAGTTACTGCCCTTCTGAACCTCTCCATACATGAGGACAATAAGGCAAGCATCATATCATCTGGTGCTGTCCCAAGCATAGTCCATGTTCTGAAGAATGGCAGCATGGAGGCACGGGAGAATGCTGCGGCCACACTTTTTAGTCTCTCAGTGATTGATGAATATAAAGTGACAATTGGAGGGATGGGGGCTATCCCTGCGCTTGTAGTGCTGTTAGGCGAGGGTAGCCAGCGGGGGAAGAAGGATGCAGCAGCAGCTCTCTTCAACTTGTGTATATACCAAGGGAACAAGGGACGAGCGATTCGAGCTGGCCTTGTGCCACTCATCAT GGGGCTGGTGACCAACCCCACAGGAGCGCTCATGGATGAGGCTATGGCAATACTCTCCATACTATCCAGCCACCCTGAGGGCAAGGCAGCGATTGGGGCGGCAGAGCCTGTCCCTGTGCTTGTGGAGATGATCGGAAGCGGAACCCCGAGAAATCGAGAGAATGCTGCGGCTGTCATGCTACATCTGTGCAGTGGAGAGCACCATCTTGTGCATTTAGCTCGTGCGCAGGAGTGCGGGATCATGGTCCCGTTGCGGGAGCTGGCTTTGAACGGCACCGATAGGGGGAAGAGGAAGGCTGTGCAGCTGCTCGAGCGGATGAGCAGATTCCTAGTCCAGCAACAAGAGGAACAGGAGTCCCAGTCGCAAGCCTCCGCGCAGGTCCCTCCTCAGGCCACCCCTGAGCAGGTCCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCGGA TT GAGTAGCATCCTGGTCACTTTGCATTCTGCTCATGATTCATGGCATGCCGACCAATTGAGGTTTTTCCACAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCAGGTTGTGAGAATTTGTTTAGGCAGCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTAAACATGCAGCTGCTATATGTAGACAACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGA                       ]
[+] EMBL BF430451             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACGCAACAGAAGATGTCAACCTCAGCATTGACGCCAAACTATGTCCTTAGAAGTCTCATTTCCCAGTGGTGTGAAACCAATGGGATGGAGCCACCAAAGCGCTCAACCCAGCCTAACAAGCCTACGCCTGCATGCTCTTCGAGTGAACGTGCTAACATCGATGCTCTGCTATCTAAGTTATGCTCTCCAGACACTGAGGAGCAGAGATCAGCTGCTGCAGAGCTTCGCCTCCTTGCAAAGCGGAATGCAAACAACCGGATTTGCATTGCTGAGGCAGGTGCCATTCCCTTGCTATTGAGTCTGCTGTCCTCATCTGACCTACAGACTCAAGAACATGCAGTTACTGCCCTTCTGAACCTCTCCATACATGAGGACAATAAGGCAAGCATCATATCATCTGGTGCTGTCCCAAGCATAGTCCATGTTCTGAAGAATGGCAGCATGGAGGCACGGGAGAATGCTGCGGCCACACTTTTTAGTCTCTCAGTGATTGATGAATATAAAGTGACAATTGGAGGGATGGGGGCTATCCCTGCGCTTGTAGTGCTGTTAGGCGAGGGTAGCCAGCGGGGGAAGAAGGATGCAGCAGCAGCTCTCTTCAACTTGTGTATATACCAAGGGAACAAGGGACGAGCGATACGAGCTGGCCTTGTGCCACTCATCAT GGGGCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF305067             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gAAAGCGCTCAACCCAGCCTAACAAGCCTACGCCTGCATGCTCTTCGAGTGAACGTGCTAACATCGATGCTCTGCTATCTAAGTTATGCTCTCCAGACACTGAGGAGCAGAGATCAGCTGCTGCAGAGCTTCGCCTCCTTGCAAAGCGGAATGCAAACAACCGGATTTGCATTGCTGAGGCAGGTGCCATTCCCTTGCTATTGAGTCTGCTGTCCTCATCTGACCTACGGACTCAAGAACATGCAGTTACTGCCCTTCTGAACCTCTCCATACATGAGGACAATAAGGCAAGCATCATATCATCTGGTGCTGTCCCAAGCATAGTCCATGTTCTGAAGAATGGCAGCATGGAGGCACGGGAGAATGCTGCGGCCACACTTTTTAGTCTCTCAGTGATTGATGAATATAAAGTGACAATTGGAGGGATGGGGGCTATCCCTGCGCTTGTAGTGCTGTTAGGCGAGGGTAGCCAGCGGGGGAAGAAAGATGCAGCAGCAGCTCTCTTCAACTTGTGTATATACCAAGGGAACAAGGGACGAGCGATTCGAGCTGGCCTTGTGCCACTCATCATGGGGGCTGGTGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AT003699             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGGAAGGCTGTGCAGCTGCTCGAGCGGATGAGCAGATTCCTAGTCCAGCAACAAGAGGAACAGGAGTCCCAGTCGCAAGCCTCCGCGCAGGTCCCTCCTCAGGCCACCCCTGAGCAGGTCCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCGGA TT GAGTAGCATCCTGGTCACTTTGCATTCTGCTCATGATTCATGGCATGCCGACCAATTGAGGTTTTTCCACAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCAGGTTGTGAGAATTTGTTTAGGCAGCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTAAACATGCAGCTGCTATATGTAGACAACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGATTTGAGCAGTAAAAAAAAAAAAA]
[+] EMBL AT003719             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGTCNCAAGCCTCCGCGCAGGTCCCTCCTCAGGCCACCCCTGAGCAGGTCCCGANAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCGGA TT GAGTAGCATCCTGGTCACTTTGCATTCTGCTCATGATTCATGGCATGCCGACCAATTGAGGTTTTTCCNCAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCAGGTTGTGAGAATTTGTTTAGNCAGCCCAGGATGTTGAGATAGATGTGTACAGTTTNTTAAACATGCAGCTGCTATATGTAGACNACATAATGCAAGGTTTTCCCATGTATATCCTGAAGNCNGTAATACCATATGTAAAAGANAAGTTTCAAATNCGGATTTGAGCAGTAAAAAAAAAAAAA]
[+] EMBL AA749599             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGCGCAGGTCCCTCCTCAGGCCACCCCTGAGCAGGTCCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCGGA TT GAGTAGCATCCTGGTCACTTTGCATTCT CTCATGATTCATGGCATG CGACCAA                                                                                                                                                                                                                                                  ]
[+] EMBL AU197209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTCGNANTTGGAGTAGCATCCTGGTCACTTTGCATTCTGCTCATGATTCATGGCATGCCGACCAATTGAGGTTTTTGCACAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCAGGTTGTGAGAATTTGTTTAGGCAGCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTAAACATGCAGCTGCTATATGTAGACAACATAATGCAAGGNTTTCCCATGTATATCCTGAAGACTGTAATACCATATGTAAAAGAGAAGTNTCAAATGCGGATTTGAGCAGTAAAAA        ]




>consensus_13544#0
TGAGACGGACAGCGTAATGAAAAAGTTTCAGGGAGTAATTTTGCAGCTGGAACAAGCTCT
GTGCGACATTCCGTACAATGAATTGGATATATCAGATGAAGTTAGAGAGCAGGTTGAGTT
AGTGCACGCACAGCTCAAAAGAGCAAAAGAACGGATTGATATGCCTGACGATGAATTCTA
CAATGATCTACTATCTGTATATGACAAGAACTATGACCCAAGTGCAGAACTGGCTATTCT
TGGAAGATTGTCAGAAAAGCTACACTTGATGACAATCACCGATCTCACGCAAGAATCACT
CGCCTTACATGAGATGGTCGCATCCGGCGGTGGTCAGGACCCAGGAGAACACATTGAGAG
AATGTCAATGCTACTGAAGAAGATTAAGGATTTTGTGCAAACACAGAACCCTGACATGGG
GCCTCCTATGGCTTCCAGGGTATTGGATTCAAATGGGGATTCAAGGCCTATAACCATTCC
TGACGAGTTCCGATGTCCAATTTCTCTTGAGCTGATGAAGGATCCTGTTATAGTGTCTAC
AGGGCAGACATATGAGCGGGCATGCATTGAGAAATGGATAGCATCAGGCCATCATACCTG
CCCAACCACGCAACAGAAGATGTCAACCTCAGCATTGACGCCAAACTATGTCCTTAGAAG
TCTCATTTCCCAGTGGTGTGAAACCAATGGGATGGAGCCACCAAAGCGCTCAACCCAGCC
TAACAAGCCTACGCCTGCATGCTCTTCGAGTGAACGTGCTAACATCGATGCTCTGCTATC
TAAGTTATGCTCTCCAGACACTGAGGAGCAGAGATCAGCTGCTGCAGAGCTTCGCCTCCT
TGCAAAGCGGAATGCAAACAACCGGATTTGCATTGCTGAGGCAGGTGCCATTCCCTTGCT
ATTGAGTCTGCTGTCCTCATCTGACCTACGGACTCAAGAACATGCAGTTACTGCCCTTCT
GAACCTCTCCATACATGAGGACAATAAGGCAAGCATCATATCATCTGGTGCTGTCCCAAG
CATAGTCCATGTTCTGAAGAATGGCAGCATGGAGGCACGGGAGAATGCTGCGGCCACACT
TTTTAGTCTCTCAGTGATTGATGAATATAAAGTGACAATTGGAGGGATGGGGGCTATCCC
TGCGCTTGTAGTGCTGTTAGGCGAGGGTAGCCAGCGGGGGAAGAAGGATGCAGCAGCAGC
TCTCTTCAACTTGTGTATATACCAAGGGAACAAGGGACGAGCGATTCGAGCTGGCCTTGT
GCCACTCATCATGGGGCTGGTGACCAACCCCACAGGAGCGCTCATGGATGAGGCTATGGC
AATACTCTCCATACTATCCAGCCACCCTGAGGGCAAGGCAGCGATTGGGGCGGCAGAGCC
TGTCCCTGTGCTTGTGGAGATGATCGGAAGCGGAACCCCGAGAAATCGAGAGAATGCTGC
GGCTGTCATGCTACATCTGTGCAGTGGAGAGCACCATCTTGTGCATTTAGCTCGTGCGCA
GGAGTGCGGGATCATGGTCCCGTTGCGGGAGCTGGCTTTGAACGGCACCGATAGGGGGAA
GAGGAAGGCTGTGCAGCTGCTCGAGCGGATGAGCAGATTCCTAGTCCAGCAACAAGAGGA
ACAGGAGTCCCAGTCGCAAGCCTCCGCGCAGGTCCCTCCTCAGGCCACCCCTGAGCAGGT
CCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGT
ATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCGGATTGAGTAGCA
TCCTGGTCACTTTGCATTCTGCTCATGATTCATGGCATGCCGACCAATTGAGGTTTTTCC
ACAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCAGGTTGTGAGAATT
TGTTTAGGCAGCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTAAACATGCAGCTGCT
ATATGTAGACAACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATA
TGTAAAAGAGAAGTTTCAAATGCGGATTTGAGCAGTAAAAAAAAAAAAA

consensusID : consensus_13544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 696
fasta sequence

                              [TAACCCCTCACTAAAGGGGGAATAAGCTTGCGNGCCGCTCCAACATCAGAATGGTAACCGTGCAGTGGAGAGCACCATCTTGTGCATTTAGCTCGTGCGCAGGAGTGCGGGATCATGGTCCCGTTGCGGGAGCTGGCTTTGAACGGCA-CCGATAGGGGGAAGAGGAAGGCTGTGCAGCTGCTCGAGCGGATGAGCA-GATTCC-TAG--TCCA-GCAACA-AGAGG-AACA-GGAGTCCCAGTCGCAAGCCTCCGCGCAGGTCCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCGGATTGAGTAGCATCCTGGTCA-CTTTGCATTCTGCTCATGATTCA-TGGCATGCCGACCAATTGAGGTTTTTCCACAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCA-GGTTGTGAGAATTTGTTTAGGCAGCCCA-GGATGTTGAGATAGATGTGTACAGTTTCTTAAACATGCAGCTGCTATATGTAGACAACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGATTTGA--CAGTAAAAAAAAAAGCTTTTCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BI306099             [TAACCCCTCACTAAAGGGGGAATAAGCTTGCGNGCCGCTCCAACATCAGAATGGTAACCGTGCAGTGGAGAGCACCATCTTGTGCATTTAGCTCGTGCGCAGGAGTGCGGGATCATGGTCCCGTTGCGGGAGCTGGCTTTGAACGGCA CCGATAGGGGGAAGAGGAAGGCTGTGCAGCTGCTCGAGCGGATGAGCA GATTCC TAG  TCCA GCAACA AGAGG AACA GGAGTCCCAGTCGCAAGCCTCCGCGCAGGTCCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCGGATTGAGTAGCATCCTGGTCA CTTTGCATTCTGCTCATGATTCA TGGCATGCCGACCAATTGAGGTTTTTCCACAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCA GGTTGTGAGAATTTGTTTAGGCAGCCCA GGATGTTGAGATAGATGTGTACAGTTTCTTAAACATGCAGCTGCTATATGTAGACAACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGATTTGA  g                                                  ]
[+] EMBL BM418969             [                                                                                                                                           TGAACGGCACCCGATAGGGGGAAGAGGAAGGCTGTGCAGCTGCTCGANCGGATGAGCA GATTCC TAG  TCCA GCAACACAGAGGTAACACGGAGTCCCAGTCGCAAGCCTCCGCGCAGGTCCCGGAAAATGACATCCCTGAACCATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCAGATTGAGTAGCATACTGGTCACCTTTGCATTCTGCTCATGATTCACTGGCATGCCGACCCATTGAGGTTTTTCCACAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCA GGTTGTGAGAATTTGTTTAGGCAGCCCA GGATGTTGAGATAGATGTGTACAGTTTCTTAAACATGCAGCTGCTATATGTAGAC ACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGATTTGAGCCAGTAAAAAAAAAA                                     ]
[+] EMBL BM038770             [                                                                                                                                                                                            GGATGACCAGGATTCCTTAGGTTCCAGGCAACA AGAGG AACA GGAGTCCCATTCGCAAGCCTCCGCGCA GTCCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCAGATTGAGTAGCATACTGGTCA CTTTGCATTCTGCTCATGATTCA TGGCATGCCGACCCATTGAGGTTTTTCCACAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCACGGTTGTGAGAATTTGTTTAGGCAGCCCANGGATGTTGAGATAGATGTGTACAGTTTCTTAAACAT CAGCTGCTATATGTAGAC ACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATATGTAAAAGAGAAGTTTC AATGCGGATTTGA  CAGTAAAAAAAAAA                                     ]
[+] EMBL AU173870             [                                                                                                                                                                                                                                                                                                                                                                          CAAATGTCGGATTGAGTAGCATCCTGGTCN CTTTGCATTNTGCTCATGATTCA TGGCATGCCGACCAATTGAGGTTTTTCCCCAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCA GGTTGTGAGAATTTGTTTAGGCAGCCCA GGATGTTNANATANATGTGTACAGTTTTTTNAACATGCAGCTGNTATATGTAGACAACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATATGTAAAANANAAGTTTCAAATGCGGATTTGAG CAGTAAATTTGATGGCTTTTCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13544#1
TAACCCCTCACTAAAGGGGGAATAAGCTTGCGNGCCGCTCCAACATCAGAATGGTAACCG
TGCAGTGGAGAGCACCATCTTGTGCATTTAGCTCGTGCGCAGGAGTGCGGGATCATGGTC
CCGTTGCGGGAGCTGGCTTTGAACGGCACCGATAGGGGGAAGAGGAAGGCTGTGCAGCTG
CTCGAGCGGATGAGCAGATTCCTAGTCCAGCAACAAGAGGAACAGGAGTCCCAGTCGCAA
GCCTCCGCGCAGGTCCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAA
TACCCTATGGTTGTATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGT
CGGATTGAGTAGCATCCTGGTCACTTTGCATTCTGCTCATGATTCATGGCATGCCGACCA
ATTGAGGTTTTTCCACAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCC
AGGTTGTGAGAATTTGTTTAGGCAGCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTA
AACATGCAGCTGCTATATGTAGACAACATAATGCAAGGTTTTCCCATGTATATCCTGAAG
ACTGTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGATTTGACAGTAAAAAAAAAAG
CTTTTCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_13544#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [TATAAGGTTCTACCATGCTGTGTGTGCTGGAAACTGCCCAGGTTGTGAGAATTTGTTTGAGGCACGCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTAAACATCGCAGCTGCTATATGTGAGACAAACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGATTTGACCAGTAAATCTGATGGCTTTACTACTAGTAACTACTCCCTCTGTCCAAAAGACTCAATTCCTGAGTTTTTTTGACTAACGTTTGACTGTTCGTCTTATATGAAATTTTTTTTATAAAAAAAAAA]

[+] EMBL BI812454             [TATAAGGTTCTACCATGCTGTGTGTGCTGGAAACTGCCCAGGTTGTGAGAATTTGTTTGAGGCACGCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTAAACATCGCAGCTGCTATATGTGAGACAAACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGATTTGACCAGTAAATCTGATGGCTTTACTACTAGTAACTACTCCCTCTGTCCAAAAGACTCAATTCCTGAGTTTTTTTGACTAACGTTTGACTGTTCGTCTTATATGAAATTTTTTTTATAAAAAAAAAA]




>consensus_13544#2
TATAAGGTTCTACCATGCTGTGTGTGCTGGAAACTGCCCAGGTTGTGAGAATTTGTTTGA
GGCACGCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTAAACATCGCAGCTGCTATAT
GTGAGACAAACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACTGTAATACCATATG
TAAAAGAGAAGTTTCAAATGCGGATTTGACCAGTAAATCTGATGGCTTTACTACTAGTAA
CTACTCCCTCTGTCCAAAAGACTCAATTCCTGAGTTTTTTTGACTAACGTTTGACTGTTC
GTCTTATATGAAATTTTTTTTATAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13544#0      TGAGACGGACAGCGTAATGAAAAAGTTTCAGGGAGTAATTTTGCAGCTGGAACAAGCTCT 60
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      GTGCGACATTCCGTACAATGAATTGGATATATCAGATGAAGTTAGAGAGCAGGTTGAGTT 120
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      AGTGCACGCACAGCTCAAAAGAGCAAAAGAACGGATTGATATGCCTGACGATGAATTCTA 180
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      CAATGATCTACTATCTGTATATGACAAGAACTATGACCCAAGTGCAGAACTGGCTATTCT 240
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TGGAAGATTGTCAGAAAAGCTACACTTGATGACAATCACCGATCTCACGCAAGAATCACT 300
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      CGCCTTACATGAGATGGTCGCATCCGGCGGTGGTCAGGACCCAGGAGAACACATTGAGAG 360
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      AATGTCAATGCTACTGAAGAAGATTAAGGATTTTGTGCAAACACAGAACCCTGACATGGG 420
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      GCCTCCTATGGCTTCCAGGGTATTGGATTCAAATGGGGATTCAAGGCCTATAACCATTCC 480
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TGACGAGTTCCGATGTCCAATTTCTCTTGAGCTGATGAAGGATCCTGTTATAGTGTCTAC 540
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      AGGGCAGACATATGAGCGGGCATGCATTGAGAAATGGATAGCATCAGGCCATCATACCTG 600
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      CCCAACCACGCAACAGAAGATGTCAACCTCAGCATTGACGCCAAACTATGTCCTTAGAAG 660
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TCTCATTTCCCAGTGGTGTGAAACCAATGGGATGGAGCCACCAAAGCGCTCAACCCAGCC 720
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TAACAAGCCTACGCCTGCATGCTCTTCGAGTGAACGTGCTAACATCGATGCTCTGCTATC 780
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TAAGTTATGCTCTCCAGACACTGAGGAGCAGAGATCAGCTGCTGCAGAGCTTCGCCTCCT 840
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TGCAAAGCGGAATGCAAACAACCGGATTTGCATTGCTGAGGCAGGTGCCATTCCCTTGCT 900
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      ATTGAGTCTGCTGTCCTCATCTGACCTACGGACTCAAGAACATGCAGTTACTGCCCTTCT 960
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      GAACCTCTCCATACATGAGGACAATAAGGCAAGCATCATATCATCTGGTGCTGTCCCAAG 1020
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      CATAGTCCATGTTCTGAAGAATGGCAGCATGGAGGCACGGGAGAATGCTGCGGCCACACT 1080
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TTTTAGTCTCTCAGTGATTGATGAATATAAAGTGACAATTGGAGGGATGGGGGCTATCCC 1140
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TGCGCTTGTAGTGCTGTTAGGCGAGGGTAGCCAGCGGGGGAAGAAGGATGCAGCAGCAGC 1200
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TCTCTTCAACTTGTGTATATACCAAGGGAACAAGGGACGAGCGATTCGAGCTGGCCTTGT 1260
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      GCCACTCATCATGGGGCTGGTGACCAACCCCACAGGAGCGCTCATGGATGAGGCTATGGC 1320
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      AATACTCTCCATACTATCCAGCCACCCTGAGGGCAAGGCAGCGATTGGGGCGGCAGAGCC 1380
consensus_13544#1      ------------------------------------------------------------
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TGTCCCTGTGCTTGTGGAGATGATCGGAAGCGGAACCCCGAGAAATCGAGAGAAT-GCTG 1439
consensus_13544#1      --------------------TAACCCCTCACTAAAGGGGGAATAAGCTTGCGNGCCGCTC 40
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      CGGCTGTCATGCTACATCTGTGCAGTGGAGAGCACCATCTTGTGCATTTAGCTCGTGCGC 1499
consensus_13544#1      CAACATCAGAATGGTAACCGTGCAGTGGAGAGCACCATCTTGTGCATTTAGCTCGTGCGC 100
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      AGGAGTGCGGGATCATGGTCCCGTTGCGGGAGCTGGCTTTGAACGGCACCGATAGGGGGA 1559
consensus_13544#1      AGGAGTGCGGGATCATGGTCCCGTTGCGGGAGCTGGCTTTGAACGGCACCGATAGGGGGA 160
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      AGAGGAAGGCTGTGCAGCTGCTCGAGCGGATGAGCAGATTCCTAGTCCAGCAACAAGAGG 1619
consensus_13544#1      AGAGGAAGGCTGTGCAGCTGCTCGAGCGGATGAGCAGATTCCTAGTCCAGCAACAAGAGG 220
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      AACAGGAGTCCCAGTCGCAAGCCTCCGCGCAGGTCCCTCCTCAGGCCACCCCTGAGCAGG 1679
consensus_13544#1      AACAGGAGTCCCAGTCGCAAGCCTCCGCGCAGGTCCC----------------------- 257
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TCCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTG 1739
consensus_13544#1      ----GGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTG 313
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      TATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCGGATTGAGTAGC 1799
consensus_13544#1      TATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTATCAAATGTCGGATTGAGTAGC 373
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      ATCCTGGTCACTTTGCATTCTGCTCATGATTCATGGCATGCCGACCAATTGAGGTTTTTC 1859
consensus_13544#1      ATCCTGGTCACTTTGCATTCTGCTCATGATTCATGGCATGCCGACCAATTGAGGTTTTTC 433
consensus_13544#2      ------------------------------------------------------------
                                                                                   

consensus_13544#0      CACAAGCTTGAACTATAAGGTTT--CCATGCT-TGTGTGCTG-AAACT-CCCAGGTTGTG 1914
consensus_13544#1      CACAAGCTTGAACTATAAGGTTT--CCATGCT-TGTGTGCTG-AAACT-CCCAGGTTGTG 488
consensus_13544#2      -------------TATAAGGTTCTACCATGCTGTGTGTGCTGGAAACTGCCCAGGTTGTG 47
                                    *********   ******* ********* ***** ***********

consensus_13544#0      AGAATTTGTTT-AGGCA-GCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTAAACAT- 1971
consensus_13544#1      AGAATTTGTTT-AGGCA-GCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTAAACAT- 545
consensus_13544#2      AGAATTTGTTTGAGGCACGCCCAGGATGTTGAGATAGATGTGTACAGTTTCTTAAACATC 107
                       *********** ***** ***************************************** 

consensus_13544#0      GCAGCTGCTATATGT-AGACAA-CATAATGCAAGGTTTTCCCATGTATATCCTGAAGACT 2029
consensus_13544#1      GCAGCTGCTATATGT-AGACAA-CATAATGCAAGGTTTTCCCATGTATATCCTGAAGACT 603
consensus_13544#2      GCAGCTGCTATATGTGAGACAAACATAATGCAAGGTTTTCCCATGTATATCCTGAAGACT 167
                       *************** ****** *************************************

consensus_13544#0      GTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGATTTGAGCAGTAAAAAAAAAAAAA 2089
consensus_13544#1      GTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGATTTGA-CAGTAAAAAAAAAAGCT 662
consensus_13544#2      GTAATACCATATGTAAAAGAGAAGTTTCAAATGCGGATTTGACCAGTAAATCTGATGGCT 227
                       ****************************************** *******    *     

consensus_13544#0      ------------------------------------------------------------
consensus_13544#1      TTTCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 696
consensus_13544#2      TTACTACTAGTAACTACTCCCTCTGTCCAAAAGACTCAATTCCTGAGTTTTTTTGACTAA 287
                                                                                   

consensus_13544#0      ----------------------------------------------
consensus_13544#1      ----------------------------------------------
consensus_13544#2      CGTTTGACTGTTCGTCTTATATGAAATTTTTTTTATAAAAAAAAAA 333