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Oryza sativa
cluster # 13549 cluster # 13549       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13549#0 length = 1169 sequences # 4  
consensus_13549#1 length = 718 sequences # 7  
consensus_13549#2 length = 411 sequences # 2  

consensusID : consensus_13549#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1169
fasta sequence
                              [TCTTCTAGGGTTTGCGCCGCGACGAGCTCTCGAAGATTTCGCCGAGGAGAAATCCAAGAAGAAGAAGATTCACCTCGCGGCGATGGCCACCGTGCAACCCGCCGCCTCGGACCCCGCGCCTCCTCCTCCTCCGGAGACGGAGGAGCAGCCGGCCGCGGCGGGGGGCGAGGAGATCGCGGCGCTCGACGAGCAGCTGGCCGTCGCGGACGGCGGCGGGGATGATGGGAAAGCGGCTGCGGCGGCGGAGG-GAGGAGGAGGAGGANGAGGAGGGAAGCTGG-TGGCGGAGACCATNCGCAANTACGCCGCGCCGCGGTCGTCGCGGTACCACGGCGTCACGAGGTTGAAGTGGAGCGGC-AAGTTCGAAGCGNACCTCTGGGACAACAGCAGCCAGGTCGAGGGCCGCAAGCGCAAGGGGAAGCATGTNTNCCTAGGAAGCTATGTTACTGAANANAATGCTGCAAGGGCACATGACCTTGCAGCCCTTAAATATTGGGGTGCAGGGCCAAACACCAAACTTAACTTCAATGTTTCTGATTATGAGAAAGAAATCGAGAGGATGAANACCATGTCCCNAGATGAATTTGTGGTGTTCATAANAA-GCAGANCANCTGTTTCTCAAGAAGAACTTCATCNTATANGGGTGTNACAAGGCGAAAGGATGGTAGATGGCAAGCACGGATTGGTAGGATTGGAGAAAGTAGAGACACCAAAGNCATCTATCTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTTGTGACCCACTTTTGNTATTTAGTAACCTACTTNTAAGGTTGGTTTTTAAAAATTAGGAGCCTTATTAGAGGGTTNCAAAGTTCTNGNNGGGCCNTNCGNAGGNTNTNANTNNNTTTGCCGGTNTGGTAAANGNTCAANCTTNNNNANTGNTTTTNGNTTANTNATTNCTTTTTACNCCAAGTTGCCCCTTTTNGGTTCCCCCGNNNATNNNTTTTGGGNTTTTTTTCCCGTNTCAANNNTGGTTCCCCNTNCCTNNGNTTGGCCNNNNTTTTTTNGGGTTNNCNTNNNNTTCNNTNTNTNNNTNNNNGNTGNNNTNNNNTCNTTATNNTAAATTCNNTNGGTNCCNNCCNNTTTNNTTTTTTTTTNTTNT]

[+] EMBL AU078761             [TCTTCTAGGGTTTGCGCCGCGACGAGCTCTCGAAGATTTCGCCGAGGAGAAATCCAAGAAGAAGAAGATTCACCTCGCGGCGATGGCCACCGTGCAACCCGCCGCCTCGGACCCCGCGCCTCCTCCTCCTCCGGAGACGGAGGAGCAGCCGGCCGCGGCGGGGGGCGAGGAGATCGCGGCGCTCGACGAGCAGCTGGCCGTCGCGGACGGCGGCGGGGATGATGGGAAAGCGGCTGCGGCGGCGGAGG GAGGAGGAGGAGGAAGAGGAGGGAAGCTGG TGGCGGAGACCATNCGCAANTACGCCGCGCCGCGGTCGTCGCGGTACCACGGCGTCACGAGGTTGAAGTGGAGCGGCAAAGTTCGAAGCGNACCTCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C72377               [                                                        AGAAGAAGAAGATTCACCTCGCGGCGATGGCCACCGTGCAACCCGCCGCCTCGGACCCCGCNCCTCCTCCTCCTCCGGAGACGGAGGAGCAGCCGGCCGCGGCGGGGGGCGAGGAGATCGCGGCGCTCGACGAGCAGCTGGCCGTCGCGGACGGCNGCGGGGATGATGGGAAAGCGGCTGCGGCGGCGGAGGNGAGGAGGAGGAGGANGAGGAGGGAAGCTGGTTGGCGGAGACCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AF074752             [                                                                                                                      CCTCCTCCTCCTCCGGAGACGGAGGAGCAGCCGGCCGCGGCGGGGGGCGAGGAGATCGCGGCGCTCGACGAGCAGCTGGCCGTCGCGGACGGCGGCGGGGATGATGGGAAAGCGGCTGCGGCGGCGGAGG GAGGAGGAGGAGGAGGAGGAGGGAAGCTGG TGGCGGAGACCATGCGCAAGTACGCCGCGCCGCGGTCGTCGCGGTACCACGGCGTCACGAGGTTGAAGTGGAGCGGC AAGTTCGAGGCGCACCTCTGGGACAACAGCAGCCAGGTCGAGGGCCGCAAGCGCAAGGGGAAGCATGTNTNCCTAGGAAGCTATGTTACTGAANANAATGCTGCAAGGGCACATGACCTTGCAGCCCTTAAATATTGGGGTGCAGGGCCAAACACCAAACTTAACTTCAATGTTTCTGATTATGAGAAAGAAATCGAGAGGATGAANACCATGTCCCNAGATGAATTTGTGGTGTTCATAANAA GCAGANCANCTGTTTCTCAAGAAGAACTTCATCNTATANGGGTGTNACAAGGCGAAAGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL D43359               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGCACATGACCTTGCAGCCCTTAAATATTGGGGTGCAGGGCCAAACACCAAACTTAACTTCAATGTTTCTGATTATGAGAAAGAAATCGAGAGGATGAAGACCATGTCCCAAGATGAATTTTTGGTGTACATAAGAAGGCAGAGCAGCTGTTTCTCAAGAGGAACTTCATCATATAGGGGTGTAACAAGGCGAAAGGATGGTAGATGGCAAGCACGGATTGGTAGGATTGGAGAAAGTAGAGACACCAAAGNCATCTATCTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTTGTGACCCACTTTTGNTATTTAGTAACCTACTTNTAAGGTTGGTTTTTAAAAATTAGGAGCCTTATTAGAGGGTTNCAAAGTTCTNGNNGGGCCNTNCGNAGGNTNTNANTNNNTTTGCCGGTNTGGTAAANGNTCAANCTTNNNNANTGNTTTTNGNTTANTNATTNCTTTTTACNCCAAGTTGCCCCTTTTNGGTTCCCCCGNNNATNNNTTTTGGGNTTTTTTTCCCGTNTCAANNNTGGTTCCCCNTNCCTNNGNTTGGCCNNNNTTTTTTNGGGTTNNCNTNNNNTTCNNTNTNTNNNTNNNNGNTGNNNTNNNNTCNTTATNNTAAATTCNNTNGGTNCCNNCCNNTTTNNTTTTTTTTTNTTNT]


>consensus_13549#0 TCTTCTAGGGTTTGCGCCGCGACGAGCTCTCGAAGATTTCGCCGAGGAGAAATCCAAGAA GAAGAAGATTCACCTCGCGGCGATGGCCACCGTGCAACCCGCCGCCTCGGACCCCGCGCC TCCTCCTCCTCCGGAGACGGAGGAGCAGCCGGCCGCGGCGGGGGGCGAGGAGATCGCGGC GCTCGACGAGCAGCTGGCCGTCGCGGACGGCGGCGGGGATGATGGGAAAGCGGCTGCGGC GGCGGAGGGAGGAGGAGGAGGANGAGGAGGGAAGCTGGTGGCGGAGACCATNCGCAANTA CGCCGCGCCGCGGTCGTCGCGGTACCACGGCGTCACGAGGTTGAAGTGGAGCGGCAAGTT CGAAGCGNACCTCTGGGACAACAGCAGCCAGGTCGAGGGCCGCAAGCGCAAGGGGAAGCA TGTNTNCCTAGGAAGCTATGTTACTGAANANAATGCTGCAAGGGCACATGACCTTGCAGC CCTTAAATATTGGGGTGCAGGGCCAAACACCAAACTTAACTTCAATGTTTCTGATTATGA GAAAGAAATCGAGAGGATGAANACCATGTCCCNAGATGAATTTGTGGTGTTCATAANAAG CAGANCANCTGTTTCTCAAGAAGAACTTCATCNTATANGGGTGTNACAAGGCGAAAGGAT GGTAGATGGCAAGCACGGATTGGTAGGATTGGAGAAAGTAGAGACACCAAAGNCATCTAT CTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAG CTTCGTGGTGCCCATGCTTGTGACCCACTTTTGNTATTTAGTAACCTACTTNTAAGGTTG GTTTTTAAAAATTAGGAGCCTTATTAGAGGGTTNCAAAGTTCTNGNNGGGCCNTNCGNAG GNTNTNANTNNNTTTGCCGGTNTGGTAAANGNTCAANCTTNNNNANTGNTTTTNGNTTAN TNATTNCTTTTTACNCCAAGTTGCCCCTTTTNGGTTCCCCCGNNNATNNNTTTTGGGNTT TTTTTCCCGTNTCAANNNTGGTTCCCCNTNCCTNNGNTTGGCCNNNNTTTTTTNGGGTTN NCNTNNNNTTCNNTNTNTNNNTNNNNGNTGNNNTNNNNTCNTTATNNTAAATTCNNTNGG TNCCNNCCNNTTTNNTTTTTTTTTNTTNT



consensusID : consensus_13549#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 718
fasta sequence
                              [GCCCATGCCCTTGCA-GCCCTTAAATATGGGGGTGCAGGGCCAAACACCAAAACTTAACTT-CAATGTTTCTGATTATGAGAAAGAAATCGAGAGGATGAA-GACCATGTCCCAAGATGAATTTGTGGTGTACATAAGAAGGCAGAGCAGCTGTTTCTCAAGAGGAACTTCATCATATAGGGGTGTAACAAGGCGAAAGGATGGTAGATGGCAAGCACGGATTGGTAGGATTGGAGAAAGTAGAGACACCAAAGACATCTATCTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTGTGACCAACTTTGATATTAGTAACTACTGTGAAGATGGTTTGAAAAAATTAGAAGCCTCATCAGAGGTTCCAAAGCTACTAGAGGGTCCATCGAAGGCTGCGAAGCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTTTTATTTATTTTCTTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTA-CCAGCTCCAGAGATAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTACTCTTTGGCATAATGATAGCTAGGC-TTGTTA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA758963             [GCCCATGACC TGCAGGCCCTTTAATATTGGGGTCCAGGGCCAAACCCCCAAACTTAACTTCCAATGTTTCTGATTATGAGAAAGAAATCGAGAGGATGAAGGCCCATGTCCCAGNATGAATTTGTGGTGTACATAAGAAGGCAGAGCAGCTGTTTCTCAAGAGGAACTTCATCATATAGGGGTGTAACAAGGCGAAAGGATGGTAGATGGCAAGCACGGATTGGTAGGATTGGAGAAAGTAGAGACACCAAAGACATCTATCTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTGTGACCAACTTTGATATTAGTAACTACTGTGAAGATGGTTTGAAAAAATTAGAAGCCTCATCAGAGGTTCCAAAGCTACTAGAGGGTCCATCGAAGGCTGCGAAGCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTTTTATTTATTTT TTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTA CCAGCTCCAGAGATAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTACTCTTTGGCATAATGATAGCTAGGC TTGTTA   CCTTCAAAAAAAAAAA                        ]
[-] EMBL CA762455             [ CCCATGCCCTTGCA GCCCTTAAATATGGGGGTGCAGGGCCAAACACCAAAACTTAACTT CAATGTTTCTGATTATGAGAAAGAAATCGAGAGGATGAA GACCATGTCCCAAGATGAATTTGTGGTGTACATAAGAAGGCAGAGCAGCTGTTTCTCAAGAGGAACTTCATCATATAGGGGTGTAACAAGGCGAAAGGATGGTAGATGGCAAGCACGGATTGGTAGGATTGGAGAAAGTAGAGACGCCAAAGACATCTATCTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTGTGACCAGCTTTGATATTAGTAACTACTGTGAAGATGGTTTGAAAAAATTAGAAGCCTCATCAGAGGTTCCAAAGCTACTAGAGGGTCCATCGAAGGCTGCGAAGCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTTTTATTTATTTTCTTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTA CCAGCTCCAGAGATAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTACTCTTTGGCATAATGATAGCTAGGC TTGTTA   AAAAAAAAAAAAAAAAA                       ]
[-] EMBL CA762454             [ CCCATGCCCTTGCA GCCCTTAAATATGGGGGTGCAGGGCCAAACACCAAAACTTAACTT CAATGTTTCTGATTATGAGAAAGAAATCGAGAGGATGAA GACCATGTCCCAAGATGAATTTGTGGTGTACATAAGAAGGCAGAGCAGCTGTTTCTCAAGAGGAACTTCATCATATAGGGGTGTAACAAGGCGAAAGGATGGTAGATGGCAAGCACGGATTGGTAGGATTGGAGAAAGTAGAGACGCCAAAGACATCTATCTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTGTGACCAGCTTTGATATTAGTAACTACTGTGAAGATGGTTTGAAAAAATTAGAAGCCTCATCAGAGGTTCCAAAGCTACTAGAGGGTCCATCGAAGGCTGCGAAGCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTTTTATTTATTTTCTTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTA CCAGCTCCAGAGATAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTACTCTTTGGCATAATGATAGCTAGGC TTGTTA   AAAAAAAAAAAAAAAAA                       ]
[+] EMBL AF073307             [                                                                                                                                                                   GGAATTTTTTTATATAGGGGTGTAACAAGGCGAAAGGATGGTAGATGGCAAGCACGGATTGGTAGGATTGGAGAAAGTAGAGAAACCAAAGAAATTTTTTTTGGAACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATGGAGTTTTGTGGTGCCCATGCTGTGACCAAATTTGATATTAGTAAATACTGTGAAGATGGTTTGAAAAAATTAGAAGCCTTATCAGAGGTTCCAAAGCGAATAGAGGGTCCATTGAAGGCTGGGAAGTTTGTTGGACGATAGATAAAAGAAAACAAATTGTAAATTGTTTTTTGTTTTATTTATTTTTTTTTTAAAACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGATATTTTTATTTCCCGTGTTGTCATGGTGGTGTTTA CCAGCTCCAGAGATAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTATTTTTTGGCATAATGATAGCTAGGC TTGTTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU182259             [                                                                                                                                                                                                                                          AGAAAGTAGAGACACCAAAGACATCTATCTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTGTGACCAACTTTGATATTAGTAACTACTGTGAAGATGGTTTGAAAAAATTAGAAGCCTCATCAGAGGTTCCAAAGCTACTAGAGGGTCCATCGAAGGCTGCGAAGCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTTTTATTTATTTTCTTTTTNNCNCCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTA CCAGCTCCAGAGATAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTACTCTTTGGCATAATGATAaaaaa                                                    ]
[+] EMBL OSS15646A            [                                                                                                                                                                                                                                                          AAAGACATCTATCTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTGTGACCAACTTTGATATTAGTAACTACTGTGAAGATGGTTTGAAAAAATTAGAAGCCTCATCAGAGGTTCCAAAGCTACTAGAGGGTCCATCGAAGGCTGCGAAG TCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTTTTATTTATTTTCTTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTACCCAGCTCCAGAGATAGGNCCATGTGATGTTGGGGGT                                                                                          ]
[+] EMBL BI805739             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGATATTCTTATCT CCGTGTTGTCAT CTGGTGTTTA CCAGCTCCAGAGATAGGACCATGTGATGTTGGGGTTGTTCGGTTGATATTACTCTTTGGCATAATGATAGCTAGGCTTTGTTA   AAAAAAAA                                ]


>consensus_13549#1 GCCCATGCCCTTGCAGCCCTTAAATATGGGGGTGCAGGGCCAAACACCAAAACTTAACTT CAATGTTTCTGATTATGAGAAAGAAATCGAGAGGATGAAGACCATGTCCCAAGATGAATT TGTGGTGTACATAAGAAGGCAGAGCAGCTGTTTCTCAAGAGGAACTTCATCATATAGGGG TGTAACAAGGCGAAAGGATGGTAGATGGCAAGCACGGATTGGTAGGATTGGAGAAAGTAG AGACACCAAAGACATCTATCTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTA TGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTGTGACCAACTTTGATATTAGTAA CTACTGTGAAGATGGTTTGAAAAAATTAGAAGCCTCATCAGAGGTTCCAAAGCTACTAGA GGGTCCATCGAAGGCTGCGAAGCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAAT TGTTTTTTGTTTTATTTATTTTCTTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGC GCTTGTATGTGTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTACCAG CTCCAGAGATAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTACTCTTTGGCATAA TGATAGCTAGGCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_13549#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 411
fasta sequence
                              [AAAAAAAAAAAAAAAAGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTGTGACCAACTTTGATATTAGTAACTACTGTGAAGATGGTTTGAAAAAATTAGAAGCCTCATCAGAGGTTCCAAAGCTACTAGAGGGTCCATCGAAGGCTGCGAAGCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTTTTATTTATTTTCTTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTACCAGCTCCAGAGATAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTACTCTTTGGCATAATGATAGCAAAAA]

[+] EMBL AK105232             [AAAAAAAAAAAAAAAAGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTGTGACCAACTTTGATATTAGTAACTACTGTGAAGATGGTTTGAAAAAATTAGAAGCCTCATCAGAGGTTCCAAAGCTACTAGAGGGTCCATCGAAGGCTGCGAAGCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTTTTATTTATTTTCTTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTACCAGCTCCAGAGATAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTACTCTTTGGCATAATGATAGC     ]
[+] EMBL AU078762             [              cgGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCTTCGTGGTGCCCATGCTGTGACCAACTTTGATATTAGTAACTACTGTGAAGATGGTTTGAAAAAATTAGAAGCCTCATCAGAGGTTCCAAAGCTACTAGAGGGTCCATCGAAGGCTGCGAAGCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTTTTATTTATTTTCTTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTACCAGCTCCAGAGATAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTACTNTTTGGCAAAAAAAAAAAAAAAA]


>consensus_13549#2 AAAAAAAAAAAAAAAAGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCGAGCT TCGTGGTGCCCATGCTGTGACCAACTTTGATATTAGTAACTACTGTGAAGATGGTTTGAA AAAATTAGAAGCCTCATCAGAGGTTCCAAAGCTACTAGAGGGTCCATCGAAGGCTGCGAA GCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTTTTATTTATTT TCTTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGTGTTTTTCGAGA TATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTACCAGCTCCAGAGATAGGACCATGTG ATGTTGGGGGTGTTCGGTTGATATTACTCTTTGGCATAATGATAGCAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13549#1      ------------------------------------------------------------
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      TCTTCTAGGGTTTGCGCCGCGACGAGCTCTCGAAGATTTCGCCGAGGAGAAATCCAAGAA 60
                                                                                   

consensus_13549#1      ------------------------------------------------------------
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      GAAGAAGATTCACCTCGCGGCGATGGCCACCGTGCAACCCGCCGCCTCGGACCCCGCGCC 120
                                                                                   

consensus_13549#1      ------------------------------------------------------------
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      TCCTCCTCCTCCGGAGACGGAGGAGCAGCCGGCCGCGGCGGGGGGCGAGGAGATCGCGGC 180
                                                                                   

consensus_13549#1      ------------------------------------------------------------
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      GCTCGACGAGCAGCTGGCCGTCGCGGACGGCGGCGGGGATGATGGGAAAGCGGCTGCGGC 240
                                                                                   

consensus_13549#1      ------------------------------------------------------------
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      GGCGGAGGGAGGAGGAGGAGGANGAGGAGGGAAGCTGGTGGCGGAGACCATNCGCAANTA 300
                                                                                   

consensus_13549#1      ------------------------------------------------------------
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      CGCCGCGCCGCGGTCGTCGCGGTACCACGGCGTCACGAGGTTGAAGTGGAGCGGCAAGTT 360
                                                                                   

consensus_13549#1      ------------------------------------------------------------
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      CGAAGCGNACCTCTGGGACAACAGCAGCCAGGTCGAGGGCCGCAAGCGCAAGGGGAAGCA 420
                                                                                   

consensus_13549#1      -------------------------------------------GCCCATGCCCTTGCAGC 17
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      TGTNTNCCTAGGAAGCTATGTTACTGAANANAATGCTGCAAGGGCACATGACCTTGCAGC 480
                                                                                   

consensus_13549#1      CCTTAAATATGGGGGTGCAGGGCCAAACACCAAAACTTAACTTCAATGTTTCTGATTATG 77
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      CCTTAAATATTGGGGTGCAGGGCCAAACACCAAA-CTTAACTTCAATGTTTCTGATTATG 539
                                                                                   

consensus_13549#1      AGAAAGAAATCGAGAGGATGAAGACCATGTCCCAAGATGAATTTGTGGTGTACATAAGAA 137
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      AGAAAGAAATCGAGAGGATGAANACCATGTCCCNAGATGAATTTGTGGTGTTCATAANAA 599
                                                                                   

consensus_13549#1      GGCAGAGCAGCTGTTTCTCAAGAGGAACTTCATCATATAGGGGTGTAACAAGGCGAAAGG 197
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      G-CAGANCANCTGTTTCTCAAGAAGAACTTCATCNTATANGGGTGTNACAAGGCGAAAGG 658
                                                                                   

consensus_13549#1      ATGGTAGATGGCAAGCACGGATTGGTAGGATTGGAGAAAGTAGAGACACCAAAGACATCT 257
consensus_13549#2      ------------------------------------------------------------
consensus_13549#0      ATGGTAGATGGCAAGCACGGATTGGTAGGATTGGAGAAAGTAGAGACACCAAAGNCATCT 718
                                                                                   

consensus_13549#1      ATCTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCG 317
consensus_13549#2      ----AAAAAAAAAAAAAAAAGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCG 56
consensus_13549#0      ATCTTGGTACCTTTGAAACGGAGATAGAGGCAGCTGAAGCTTATGACCTAGCTGCCATCG 778
                               *      ***  ****************************************

consensus_13549#1      AGCTTCGTGGTGCCCATGCT-GTGACCAACTTT-GATATT-AGTAAC-TACT-GTGAAGA 372
consensus_13549#2      AGCTTCGTGGTGCCCATGCT-GTGACCAACTTT-GATATT-AGTAAC-TACT-GTGAAGA 111
consensus_13549#0      AGCTTCGTGGTGCCCATGCTTGTGACCCACTTTTGNTATTTAGTAACCTACTTNTAAGGT 838
                       ******************** ****** ***** * **** ****** ****  * * * 

consensus_13549#1      TGGTTTGAAAAAATTAGAAGCCTCATCAGAGG-TTCCAAAGCTACTAGAGGGTCCATCGA 431
consensus_13549#2      TGGTTTGAAAAAATTAGAAGCCTCATCAGAGG-TTCCAAAGCTACTAGAGGGTCCATCGA 170
consensus_13549#0      TGGTTTTTAAAAATTAGGAGCCTTATTAGAGGGTTNCAAAGTTCTNGNNGGGCCNTNCGN 898
                       ******  ********* ***** ** ***** ** ***** *      *** *   ** 

consensus_13549#1      AGGCTGCGAAGCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTT 491
consensus_13549#2      AGGCTGCGAAGCTCGCTGGACGATAGATAAAAGAATACAACTTGTAAATTGTTTTTTGTT 230
consensus_13549#0      AGGNTNTNAN-TNNNTTTGCCGGTNTGGTAAANGNTCAANCTTNNNNANTGNTTTTNGNT 957
                       *** *   *       * * ** *     ***   *  * ***    * ** **** * *

consensus_13549#1      TTATTTATTTTCTTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGT- 550
consensus_13549#2      TTATTTATTTTCTTTTTAACACCAAGTTGGCCCTTTTTAGTTTTCCCGCGCTTGTATGT- 289
consensus_13549#0      T-ANTNATTNCTTTTT--ACNCCAAGTTGCCCCTTTTNGGTTCCCCCGNNNATNNNTTTT 1014
                       * * * ***   ****  ** ******** *******  ***  ****    *   * * 

consensus_13549#1      -GTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTACCAGCTCCAGAGA 609
consensus_13549#2      -GTTTTTCGAGATATTCTTATCTGCCGTGTTGTCATGCTGGTGTTTACCAGCTCCAGAGA 348
consensus_13549#0      GGGNTTTTTTTCCCGTNTCAANNNTGGT-TCCCCNTNCCTNNGNTTGGCCNNNNTTTTTT 1073
                        *  ***        * * *      ** *   * * *    * **  *           

consensus_13549#1      TAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTACTCTTTGGCATAATGATAGCTA 669
consensus_13549#2      TAGGACCATGTGATGTTGGGGGTGTTCGGTTGATATTACTCTTTGGCATAATGATAGCAA 408
consensus_13549#0      NGGGTTNNCNTNNNNTTCNNTNTNTNNNTNNNNGNTGNNNTNNNNTCNTTATNNTAAATT 1133
                         **      *    **     * *          *          * * **  **    

consensus_13549#1      GGCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 718
consensus_13549#2      AAA---------------------------------------------- 411
consensus_13549#0      CNNTNGGTNCCNNCCNNTTTNNTTTTTTTTTNTTNT------------- 1169
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)