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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1612 fasta sequence
[GAAATGATATCCATTTCCCACCCTCCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCAAGTGGCTCCCAAGGACATAATGTCAATGGAGGACAGAAGAAAGTGCAGCATGCTAGCCCACTCACTCTGAACAATGGGTCAAAGCACCGTCCATTGACTCCCATGAGACGATGCCGCGGTGTAGCATGTGTGGTGATCATACTGTCAACAGCATTCACATTGATAGTTTTCATAGCCCCTATTACTACTTTCCTTGTTCGGCTAGTCAGCGTGCATTACAGTAGAAAGGCGACCTCTGTTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCT-GGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATG-AAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTGTAGAAACCCTTGGCTTGTGCAATTAAAATCGTTCCTCTTTTGTTTTACTTCTGCAAGATGATTTAGTAAAAAAAAA]
[+] EMBL AK103516 [GAAATGATATCCATTTCCCACCCTCCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTGTGTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCAAGTGGCTCCCAAGGACATAATGTCAATGGAGGACAGAAGAAAGTGCAGCATGCTAGCCCACTCACTCTGAACAATGGGTCAAAGCACCGTCCATTGACTCCCATGAGACGATGCCGCGGTGTAGCATGTGTGGTGATCATACTGTCAACAGCATTCACATTGATAGTTTTCATAGCCCCTATTACTACTTTCCTTGTTCGGCTAGTCAGCGTGCATTACAGTAGAAAGGCGACCTCTGTTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCT GGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATG AAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTGTAGAAACCCTTGGCTTGTGCAATT ]
[+] EMBL CB683465 [ CCACCCTCCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCAAGTGGCTCCCAAGGACATAATGTCAATGGAGGACAGAAGAAAGTGCAGCATGCTAGCCCACTCACTCTGAACAATGGGTCAAAGCACCGTCCATTGACTCCCATGAGACGATGCCGCGGTGTAGCATGTGTGGTGATCATACTGTCAACAGCATTCACATTGATAGTTTTCATAGCCCCTATTACTACTTTCCTTGTTCGGCTAGTCAGCGTGCATTACAGTAGAAAGGCGACCTCTGTTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCT GGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATGAAAGCATTTAT CAGA ]
[+] EMBL CB681740 [ ACCCTCCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCAAGTGGCTCCCAAGGACATAATGTCAATGGAGGACAGAAGAAAGTGCAGCATGCTAGCCCACTCACTCTGAACAATGGGTCAAAGCACCGTCCATTGACTCCCATGAGACGATGCCGCGGTGTAGCATGTGTGGTGATCATACTGTCAACAGCATTCACATTGATAGTTTTCATAGCCCCTATTACTACTTTCCTTGTTCGGCTAGTCAGCGTGCATTACAGTAGAAAGGCGACCTCTGTTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCT GGGCATTTCACATTTTT ]
[-] EMBL CB681741 [ AAATTGCCTGTTTTTAGCTGGGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATG AAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAGGCTGTATATCTGCAAAAGATATTTACTGTAGAAAaaaaaga ]
[-] EMBL CB683852 [ CT GGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATG AAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAGACTGTATATCTGCAAAAGATATTTACTGTAGAAAtttaaaga ]
[-] EMBL CF278192 [ TGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTAAG GAGGTACAAGGTCTATGTATTATTAAGATGCGCTTACCTTACATTTAAAACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTGTAAAAACCCTTGGCTTGTGCAAAAAAA ]
[-] EMBL CF318815 [ CACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCA TTTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTGTAGAAACCCTTGGCTTGTGCAATTGTCATCGTTCCTCTTTTGTTTTACTTCTGCAAGATGATTTAGTAAAAAAAAA]
consensusID : consensus_13551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1094 fasta sequence
[AAAGGCTTGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTTCTGTAGAAAAAAAAAA]
[+] EMBL AK104484 [AAAGGCTTGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGA ]
[+] EMBL AK060870 [AAAGGCTTGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGA ]
[+] EMBL CA762908 [ CTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATGTTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACATGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTTCTGTAGAAAAAAAAAA]
[-] EMBL BI305434 [ CGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTGTAGAAAccctt ]
consensusID : consensus_13551#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[TGGACTGAGGAGTGAAAAATCCCTTAGCCTACGCGGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATGNAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCATTTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGGATGTATCCACACCGGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTG]
[+] EMBL CF318816 [TGGACTGAGGAGTGAAAAATCCCTTAGCCTACGCGGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATGNAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCATTTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGGATGTATCCACACCGGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTG]
consensusID : consensus_13551#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[TTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCTGGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATGAAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACGTAAGGCATATTTATCTTTAGAATTCATTAATATATTTTTAGTATGATCCACCTGCACTATCAGAATTTATATTCTTAATCACATATCTGTCGAACTTTCTAAGTTTTCAAATATACTGAACGCATTTTCCCCTGTCAATACTGCCTTTGAGAAACGGTTTCTCATTCTATTGAGTTATTGCCTATGTAT]
[+] EMBL CF307351 [TTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCTGGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATGAAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACGTAAGGCATATTTATCTTTAGAATTCATTAATATATTTTTAGTATGATCCACCTGCACTATCAGAATTTATATTCTTAATCACATATCTGTCGAACTTTCTAAGTTTTCAAATATACTGAACGCATTTTCCCCTGTCAATACTGCCTTTGAGAAACGGTTTCTCATTCTATTGAGTTATTGCCTATGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13551#0 GAAATGATATCCATTTCCCACCCTCCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTT 60
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 ------------------------------------------------------------
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 CCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCG 120
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 ------------------------------------------------------------
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 CCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCA 180
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 ------------------------------------------------------------
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 GGCGAGAGGATTATGTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACC 240
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 ------------------------------------------------------------
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 CTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCAAGTGG 300
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 -----AAAGGCTTGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCG 55
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 CTCCCAAGGACATAATGTCAATGGAGGACAGAAGAAAGTGCAGCATGCTAGCCCACTCAC 360
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 ACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAAC 115
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 TCTGAACAATGGGTCAAAGCACCGTCCATTGACTCCCATGAGACGATGCCGCGGTGTAGC 420
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 CTTTTGAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACAT 175
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 ATGTGTGGTGATCATACTGTCAACAGCATTCACATTGATAGTTTTCATAGCCCCTATTAC 480
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 CTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGG 235
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 TACTTTCCTTGTTCGGCTAGTCAGCGTGCATTACAGTAGAAAGGCGACCTCTGTTCTGTT 540
consensus_13551#3 -----------------------------------------------------TTCTGTT 7
consensus_13551#1 GAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCTAATCCCATT 295
consensus_13551#2 ---------------------------------TGGACTG-AGGAGTGAAAAATCCC-TT 25
* * **
consensus_13551#0 TGGA--ATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTG 598
consensus_13551#3 TGGA--ATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTG 65
consensus_13551#1 AGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTC 355
consensus_13551#2 AGCC-TACGCGGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTC 84
* * * ** * ** * **** * * ** ** *** *
consensus_13551#0 --GTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACA 656
consensus_13551#3 --GTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACA 123
consensus_13551#1 CCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGC 415
consensus_13551#2 CCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGC 144
** * *** * * * * * * ** * ** * * *
consensus_13551#0 GGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGAT 716
consensus_13551#3 GGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGAT 183
consensus_13551#1 GATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGA- 474
consensus_13551#2 GATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGA- 203
* ** ** * * * * * ** * **** * * * * **
consensus_13551#0 ATATCAAGTACATCCTTAAGAGCA--GCTTGA-------TGAAATTGCCTGTTTTTAGCT 767
consensus_13551#3 ATATCAAGTACATCCTTAAGAGCA--GCTTGA-------TGAAATTGCCTGTTTTTAGCT 234
consensus_13551#1 --GTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAA 532
consensus_13551#2 --GTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAA 261
***** * ** *** ***** * ** * *** ** * **
consensus_13551#0 GGGCATTTCACATTTTTGA-GTTTATCCCAGTAGAACGGAA----ATGGGAGATTGATGA 822
consensus_13551#3 GGGCATTTCACATTTTTGA-GTTTATCCCAGTAGAACGGAA----ATGGGAGATTGATGA 289
consensus_13551#1 GACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGA 592
consensus_13551#2 GACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGA 321
* * **** **** *** *** * * * ** ****
consensus_13551#0 AGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGC 882
consensus_13551#3 AGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGC 349
consensus_13551#1 TGTCACAATAGCGTATAAGC-ATCGCCTGCCAGATTTTCTGGATATTATATATGGC--AC 649
consensus_13551#2 TGTCACAATAGCGTATAAGC-ATCGCCTGCCAGATTTTCTGGATATTATATATGGC--AC 378
* * ** * * ** * ** * * * ** * * *** *
consensus_13551#0 CGTTTTCCCTGAGGGCACTGATTATACTGAGAAGAAATGCATC---AAGAGTCAAGAATA 939
consensus_13551#3 CGTTTTCCCTGAGGGCACTGATTATACGTAAGGCATATTTATCTTTAGAATTCATTAATA 409
consensus_13551#1 CGATCCTTCTGAAGTCCACA--TCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACG 707
consensus_13551#2 CGATCCTTCTGAAGTCCACA--TCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACG 436
** * **** * * * ** * * * * **
consensus_13551#0 TGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTT 999
consensus_13551#3 TATTTTT-AGTATGATCCACCTGCACTATCAGAATTTATATTCTTAATCACATA-----T 463
consensus_13551#1 TCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGC---TT 764
consensus_13551#2 TCAGAAGATGAAGTAACCGATTGGATGATGNAGAGGTTCAGGCAGAAGGACCAGC---TT 493
* * * * * * * ** ** *
consensus_13551#0 CCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAG--ATGCAGTTTATGATGTCACAATA 1057
consensus_13551#3 CTGTCGAACTTTCTAAGTTTTCAA--ATATACTGA--ACGCATTTTCCCCTGTCAATACT 519
consensus_13551#1 CTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGG-ATGTATC 823
consensus_13551#2 CTGTCAT-TTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGGATGTATC 552
* * *** * ** * * * * * *
consensus_13551#0 GCGTATAAGCATCGCCTGCCAGATTTTCTGGAT-ATTATATATGGCACCGATCCTTCTGA 1116
consensus_13551#3 GCCTTTGAGAAACGGTTTCTCATTCTATTGAGTTATTGCCTATG-TAT------------ 566
consensus_13551#1 CACACCGG-AGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGT 882
consensus_13551#2 CACACCGGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTG- 611
* * * ** * * * *
consensus_13551#0 AGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGT 1176
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 ACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACC 942
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 AACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCAT 1236
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 TTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTG 1002
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 GCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGC 1296
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 GAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATAT 1062
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 TAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTC 1356
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 CTGCAAAAGATATTTTCTGTAGAAAAAAAAAA---------------------------- 1094
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 TGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTT 1416
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 ------------------------------------------------------------
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 CTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGT 1476
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 ------------------------------------------------------------
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 ACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTG 1536
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 ------------------------------------------------------------
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 TAGAAACCCTTGGCTTGTGCAATTAAAATCGTTCCTCTTTTGTTTTACTTCTGCAAGATG 1596
consensus_13551#3 ------------------------------------------------------------
consensus_13551#1 ------------------------------------------------------------
consensus_13551#2 ------------------------------------------------------------
consensus_13551#0 ATTTAGTAAAAAAAAA 1612
consensus_13551#3 ----------------
consensus_13551#1 ----------------
consensus_13551#2 ----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||