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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1804 fasta sequence
[AAACTGCCAAGTAAACCTACTCACCAATAATCCATCCTCGAATCCTCGATTTATCATGGAGATAAACTCGGCAGCCACCCTCACCCTCGTCTCTCTCCTCACCCTCCCCATTCTTCTGGCGTTGCTGACCCGCAAGTCGTCGTCAAAGAAGAGGAGGCCTCCAGGGCCATGGAACCTCCCCTTGGTCGGCGGCCTCCTCCACCTCCTCCGGTCGCATCCGCAGGTCGCGCTCCGCGAGCTCGCCAGCAAGTACGGCCCGGTGATGTTCCTCCGGATGGGGCAGATCGACACGGTCGTCGTCTCATCGCCGGCGGCGGCGCAGGAGGTGCTCCGCGACAAGGACGTCATGTTCGCGTCGCGGCCGAGCCTCCTCGTCTCGGAGATCTTCTGCTACGACAACCTCGACGTCGGCTTCGCGCCCTACGGCGCCTACTGGCGGATGCTGCGCAAGCTCTGCACGGTGGAGCTCCTCAGCACCAAGGTGGTGCGGCAGCTCGCGCCGGTCAGGAATGACGAGACGCTGACCCTCGTCAGGAACATCAAGGCCGCCTCCTCCGGCCATGGCGGCGGCGGCGGCAAGAAGCCGGTCACCCTCGCCAGGCTGCTCACGACGTGCACGAACACGATCACCGCCAAGGCGGCGTTCGGGCAGGCGTGCGGCGTCGAGCTCCAGGAGCAGTTCTTGACGGCTCTGGACGTCGGGCTCAAGTTCAGCGGCGGATTCTGCTTCGGCGACCTCTTCCCGTCGCTGCGGTTCATCGACGCCATGACCGGGCTGAGGAGCCGCCTGTGGCGAGCACGCGGGCAGCTGGACTCCGTCTTCGACAAGATCATCGCTCAGTGCGAGGAGCATCAGGGTGATTCCCTTGTCAACGTCCTTCTCAGGATCAGAGATCAGGGCGACCTCGAATTCCCCTTCGGCACAACGAACATCAAGGCAATTATACTGGATATGTTCACGGGAGGGACAGAGACGACGTCGTCGGCCGCGGAGTGGGTCATGTCGGAGCTCATGAGGAACCCTGAGGTAATGGCCAAGGTACAGGCCGAGGTGCGGCGAGTGTTCGACAACAAGAGCCCACAAGACCATGAGGGCCTGATTGACAACCTACGCTACATGAAGATGGTGATCAAGGAGACTATGAGGTTGAATCCAGTGTTGCCGCTGCTGATGCCCCATCTCTGCCGGGAGACCTGCGACATTGGTGGTTATGAGGTCGTGGAGGGGACCAGGGTGGTGATCAATTCGTGGGCGATGGCGAGGAGCCCC-GAGTACTGGGATGACGCGGAGGAGTTTAAGCCAGAGAGGTTTGAGGATGGCATGGCAGACTACAAAGGCTCCCGTTTTGAGTACTTGCCGTTTGGAACCGGGAGGAGGAGATGCCCTGGTGATACA-TTTGGTATGGT-CTTGTTGGAGCTCA-TCGTGGCACGCC-TTCTC-TACTACTTCGATTGGAGCCTCCCTGCCGGAATGCAGCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCTAGTGGCGTCGCCATATAAGTTGGCTCCTATCCAAATCTGATGGATATACGGCTCCTACCCAAAGCTGATGGATGTATCAGTGTGTTTGTTCTTTTCTTATCATAGGTGTATTTGTTATTCGCGTGTTTGTGTACCTTGTAAGGGTGCACGTAATGTTTGT-CCCCGGATAATGGACAAACAAATAATAATTGTGAACAATATCATGTACTACTACGTATTTATTTAAAGTTAC-AAAATATTTGATAATTATTAAGAA---AAAAAAAAA]
[+] EMBL AK071546 [AAACTGCCAAGTAAACCTACTCACCAATAATCCATCCTCGAATCCTCGATTTATCATGGAGATAAACTCGGCAGCCACCCTCACCCTCGTCTCTCTCCTCACCCTCCCCATTCTTCTGGCGTTGCTGACCCGCAAGTCGTCGTCAAAGAAGAGGAGGCCTCCAGGGCCATGGAACCTCCCCTTGGTCGGCGGCCTCCTCCACCTCCTCCGGTCGCATCCGCAGGTCGCGCTCCGCGAGCTCGCCAGCAAGTACGGCCCGGTGATGTTCCTCCGGATGGGGCAGATCGACACGGTCGTCGTCTCATCGCCGGCGGCGGCGCAGGAGGTGCTCCGCGACAAGGACGTCATGTTCGCGTCGCGGCCGAGCCTCCTCGTCTCGGAGATCTTCTGCTACGACAACCTCGACGTCGGCTTCGCGCCCTACGGCGCCTACTGGCGGATGCTGCGCAAGCTCTGCACGGTGGAGCTCCTCAGCACCAAGGTGGTGCGGCAGCTCGCGCCGGTCAGGAATGACGAGACGCTGACCCTCGTCAGGAACATCAAGGCCGCCTCCTCCGGCCATGGCGGCGGCGGCGGCAAGAAGCCGGTCACCCTCGCCAGGCTGCTCACGACGTGCACGAACACGATCACCGCCAAGGCGGCGTTCGGGCAGGCGTGCGGCGTCGAGCTCCAGGAGCAGTTCTTGACGGCTCTGGACGTCGGGCTCAAGTTCAGCGGCGGATTCTGCTTCGGCGACCTCTTCCCGTCGCTGCGGTTCATCGACGCCATGACCGGGCTGAGGAGCCGCCTGTGGCGAGCACGCGGGCAGCTGGACTCCGTCTTCGACAAGATCATCGCTCAGTGCGAGGAGCATCAGGGTGATTCCCTTGTCAACGTCCTTCTCAGGATCAGAGATCAGGGCGACCTCGAATTCCCCTTCGGCACAACGAACATCAAGGCAATTATACTGGATATGTTCACGGGAGGGACAGAGACGACGTCGTCGGCCGCGGAGTGGGTCATGTCGGAGCTCATGAGGAACCCTGAGGTAATGGCCAAGGTACAGGCCGAGGTGCGGCGAGTGTTCGACAACAAGAGCCCACAAGACCATGAGGGCCTGATTGACAACCTACGCTACATGAAGATGGTGATCAAGGAGACTATGAGGTTGAATCCAGTGTTGCCGCTGCTGATGCCCCATCTCTGCCGGGAGACCTGCGACATTGGTGGTTATGAGGTCGTGGAGGGGACCAGGGTGGTGATCAATTCGTGGGCGATGGCGAGGAGCCCC GAGTACTGGGATGACGCGGAGGAGTTTAAGCCAGAGAGGTTTGAGGATGGCATGGCAGACTACAAAGGCTCCCGTTTTGAGTACTTGCCGTTTGGAACCGGGAGGAGGAGATGCCCTGGTGATACA TTTGGTATGGT CTTGTTGGAGCTCA TCGTGGCACGCC TTCTC TACTACTTCGATTGGAGCCTCCCTGCCGGAATGCAGCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCTAGTGGCGTCGCCATATAAGTTGGCTCCTATCCAAATCTGATGGATATACGGCTCCTACCCAAAGCTGATGGATGTATCAGTGTGTTTGTTCTTTTCTTATCATAGGTGTATTTGTTATTCGCGTGTTTGTGTACCTTGTAAGGGTGCACGTAATGTTTGT CCCCGGATAATGGACAAACAAATAATAATTGT ]
[+] EMBL CB664134 [ CTTCGGCACAACGAACATCAAGGCAATTATACTGGATATGTTCACGGGAGGGACAGAGACGACGTCGTCGGCCGCGGAGTGGGTCATGTCGGAGCTCATGAGGAACCCTGAGGTAATGGCCAAGGTACAGGCCGAGGTGCGGCGAGTGTTCGACAACAAGAGCCCACAAGACCATGAGGGCCTGATTGACAACCTACGCTACATGAAGATGGTGATCAAGGAGACTATGAGGTTGAATCCAGTGTTGCCGCTGCTGATGCCCCATCTCTGCCGGGAGACCTGCGACATTGGTGGTTATGAGGTCGTGGAGGGGACCAGGGTGGTGATCAATTCGTGGGCGATGGCGAGGAGCCCC GAGTACTGGGATGACGCGGAGGAGTTTAAGCCAGAGAGGTTTGAGGATGGCATGGCAGACTACAAAGGCTCCCGTTTTGAGTACTTGCCGTTTGGAACCGGGAGGAGGAGATGCCCTGGTGATACA TTTGGTATGGT CTTGTTGGAGCTCA TCGTGGCACGCC TTCTC TACTACTTCGATTGGAGCCTCCCTGCCGGAATGCAGCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCA ]
[-] EMBL AW070083 [ GCCGAGGTACGGCGAGTGTTCGACAACAAGAGCCCACAAGACCATGAGGGCCTGATTGACAACCTACGCTACATGAAGATGGTGATCAAGGAGACTATGAGGTTGAATCCAGTGTTGCCGCTGCTGATGCCCCATCTCTGCCGGGAGACCTGCGACATTGGTGGTTATGAGGTCGTGGAGGGGACCAGGGTGGTGATCAATTCGTGGGCGATGGCGAGGAG ]
[-] EMBL CB664135 [ TTGCCGCTGCTGATGCCCCATCTCTGCCGGGAGACCTGCGACATTGGTGGTTATGAGGTCGTGGAGGGGACCAGGGTGGTGATCAATTCGTGGGCGATGGCGAGGAGCCCC GAGTACTGGGATGACGCGGAGGAGTTTAAGCCAGAGAGGTTTGAGGATGGCATGGCAGACTACAAAGGCTCCCGTTTTGAGTACTTGCCGTTTGGAACCGGGAGGAGGAGATGCCCTGGTGATACA TTTGGTATGGT CTTGTTGGAGCTCA TCGTGGCACGCC TTCTC TACTACTTCGATTGGAGCCTCCCTGCCGGAATGCAGCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCTAGTGGCGTCGCCATATAAGTTGGCTCCTATCCAAATCTGATGGATATACGGCTCCTACCCAAAGCTGATGGATGTATCAGTGTGTTTGTTCTTTTCTTATCATAGGTGTATTTGTTATTCGCGTGTTTGTGTACCTTGTAAGGGTGCACGTAATGTTTGT CCCCGGATAATGGACAAACAAATAATAATTGTGAACA ]
[+] EMBL CA764537 [ GGTCATCAATTCGTGGGCGATGGCGAGGAGCCCC GAGTACTGGGATGACGCGGAGGAGTTTAAGCCAGGGAGGTTTGAGGATGGCATGGCAGACTACAAAGGCTCCCGTTTTGAGTACTTGCCGTTTGGAACCGGGAGGAGGAGATGCCCTGGTGATACA TTTGGTATGGT CTTGCTGGAGCTCA TCGTGGCACGCC TTCTC TACTACTTCGATTGGAGCCTCCCTGCCGGAATGCAGCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCTAGTGGCGTCGCCATATAAGTTGGCTCCTATCCAAATCTGATGGATATACGGCTCCTACCCAAAGCTGATGGATGTATCAGTGTGTTTGTTCTTTTCTTATCATAGGTGTATTTGTTATTCGCGTGTTTGTGTACCTTGTAAGGGTGCACGTAATGTTTGT CCCCGGATAATGGACAAACAAATAATAATTGTGAACAATATCATGTACTACTACGTATTTATTTAAAGTTAC AAAATAT ]
[+] EMBL BM419526 [ GAGCCCCGGAGTACTGGGATGACGCGGAGGAGTTTAAGCCAGAGAGGTTTGAGGATGGCAT GCAGACTACAAAGGCTCCCGTTTTGAGTACTT CCGTTTGGAACCGGGAGGAGGAGATG CCTGGTGATACA TTTGGTATGTT CTTGCTGGAGCTCA TCGTGGCACGCC TTCTC TACTACTTCGATTGGAGCCTCCCTGCCGGAATGCAGCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCTAGTGGCGTCGCCATATAAGTTGGCTCCTATCCAAATCTGATGGATATACGGCTCCTACCCAAAGCTGATGGATGTATCAGTGTGTTTGTTCTTTTCTTATCATAGGTGTATTTGTTATTCGCGTGTTTGTGTACCTTGTAAGGGTGCACGTAATGTTTGTCCCCCGGATAATGGACAAACAAATAATAATTGTGAACAATATCATGTACTACTACGTATTTATTTAAAGTTACAAAAATATTTGATAATTATTAAGAATTCAAAAAAAAA]
[+] EMBL BI811694 [ GGTGATACATTTTGGTATGTTCCTTGCTGGAGCTCAGTCGTGGCACGCCGTTCTCGTACTACTTCGATTGGAGCCT CCTGCCGGAATGCATCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCTAGTGGCGTC CCATATAA TTGGCTCCTATGCCAATCTGATGGATATACGGCTCCTACCCAAAGCTGATGGATGTATCAGTGTGTTTGTTCTTTTCTTATCATAGGTGTATTTGTTATTCGCGTGTTTGTGTACCTTGTAAGGGTGCACGTAATGTTTGT CCCCGGATAATGGACAAACAAATAATAATTGTGAACAATATCATGTACTACTACGTATTTATTTAAAGTTAC AAATATTTGATAATTATTAAAAA AAAAA ]
[+] EMBL BI802292 [ CAGCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCTAGTGGCGTCGCCATATAAGTTGGCTCCTATCC AATCTGATGGATATACGGCTCCTACCC AAGCTGATGGATGTATCAGTGTGTTTGTTCTTTTCTTATCATAGGTGTATTTGTTATTCGCGTGTTTGTGTACCTTGTAAGGGTGCACGTAATGTTTGT CCCCGGATAATGGAC AACAAATAATAATTGTGAACAATATCATGTACTACTACGTATTTATTTAAAGTTAC AAATATTTGATAATTATTAAGAA AAA ]
consensusID : consensus_13554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1790 fasta sequence
[CTGCCAAGTAATTAAACCTAATCAATCATCAAGCCATATATACATCCTCTATCTATCGATCGATGATGGAGATAAACTCAGAAGCCACCGTCACCCTCGTCTCCGTCGTCACCCTGCCCATTCTTCTCGCGTTGCTGACCCGCAAGTCGTCGTCAAAGAAGAGACGGCCTCCGGGGCCATGGAACCTCCCCTTGGTCGGCGGCCTCCTCCACCTCCTCCGGTCGCAACCGCAGGTCGCACTCCGCGACCTCGCCGGCAAGTACGGCCCGGTGATGTTCCTGCGGACGGGGCAGGTGGACACCGTCGTGATCTCCTCGCCGGCGGCGGCGCAGGAGGTGCTCCGCGACAAGGACGTCACCTTCGCGTCGCGGCCGAGCCTCCTCGTCTCGGAGATCTTCTGCTACGGCAACCTCGACATCGGCTTCGCGCCCTACGGCGCCTACTGGCGGATGCTGCGCAAGCTCTGCACGGTGGAGCTCCTCAGCACCAAGATGGTGCGGCAGCTCGCGCCGATCAGGGACGGCGAGACGCTGGCCCTTGTCAGGAACATCGAGGCCGCCGCCGGCGGCAAGAAGCCGTTCACCCTCGCCACGCTGCTCATCTCGTGCACGAACACGTTCACCGCGAAGGCGGCGTTCGGGCAGGCGTGCGGCGGCGAGCTCCAGGAGCAGTTCTTGACGGCTCTGGACGAAGCGCTCAAGTTCAGCAATGGGTTCTGCTTCGGCGACCTCTTCCCGTCGCTGCGGTTCATCGACGCCATGACCGGGCTGAGGAGCCGCCTGGAGCGACTGCGCTTGCAGCTGGACACCGTCTTCGACAAGATCGTCGCTCAGTGCGAGTCGAATCCGGGTGATTCCCTTGTCAACGTCCTGCTCAGGATCAAGGACCAGGGCGAGCTTGACTTCCCCTTTAGCTCAACACACGTCAAGGCAATTATACTGGATATGTTCACGGGAGGGACAGAGACGACATCATCTACCACCGAGTGGCTCATGTCGGAGTTGATGAGGAACCCAGAGGTGATGGCCAAGGTGCAGGCTGAGGTGCGAGGAGTATTCGACAACAAGAGCCCACAAGACCACGAGGGCCTGCTTGAAAACCTATCATACATGAAGTTGGTGATCAAGGAGACCCTGAGGCTGAATCCGGTGTTGCCGCTGCTACTCCCCCATTTATGTCGGGAGACCTGCGAAATCGGAGGGTATGAGATTGTGGAGGGCACCAGAGTGTTGATCAATTCGTGGGCGATGGCGAGGAGCCCCGAGTATTGGGACGATGCGGAGAAGTTCATACCAGAGAGGTTTGAGGATGGCACAGCGGACTTCAAAGGCTCCCGTTTTGAGTACTTGCCATTTGGGACCGGGAGAAGGAGGTGCCCTGGTGATATATTTGCAATGGCCACGCTGGAACTCATCGTGGCGCGCCTTCTATACTACTTCGACTGGAGCCTCCCGGATGGGATGCAGCCAGGTGATATCGACATGGAGCTCGTCGTTGGTGCAACGGCGAGGAGAAAGAATCATCTCCAGCTAGTGGCATCACCATATAAGCCGATTTCCATGCAAAGTTGATGGATGTGTGTGACTGTGTGTCGGTGTACTTGCGGTTCGCTTACGTGCTTGCATACCTCTTAATAAGTTTTGTTTGTCCTGGGGAAATGGACAAACAAATTAATAATACTAGTTGATACCCCGTGCTTTGCCGTGGGATGTGTGGATGAATGCATTTTATATATGATATAAATGATAGATGTACAAGTTTAAATAATGTGAAAATGATATGGAGATAAT]
[+] EMBL AK071864 [CTGCCAAGTAATTAAACCTAATCAATCATCAAGCCATATATACATCCTCTATCTATCGATCGATGATGGAGATAAACTCAGAAGCCACCGTCACCCTCGTCTCCGTCGTCACCCTGCCCATTCTTCTCGCGTTGCTGACCCGCAAGTCGTCGTCAAAGAAGAGACGGCCTCCGGGGCCATGGAACCTCCCCTTGGTCGGCGGCCTCCTCCACCTCCTCCGGTCGCAACCGCAGGTCGCACTCCGCGACCTCGCCGGCAAGTACGGCCCGGTGATGTTCCTGCGGACGGGGCAGGTGGACACCGTCGTGATCTCCTCGCCGGCGGCGGCGCAGGAGGTGCTCCGCGACAAGGACGTCACCTTCGCGTCGCGGCCGAGCCTCCTCGTCTCGGAGATCTTCTGCTACGGCAACCTCGACATCGGCTTCGCGCCCTACGGCGCCTACTGGCGGATGCTGCGCAAGCTCTGCACGGTGGAGCTCCTCAGCACCAAGATGGTGCGGCAGCTCGCGCCGATCAGGGACGGCGAGACGCTGGCCCTTGTCAGGAACATCGAGGCCGCCGCCGGCGGCAAGAAGCCGTTCACCCTCGCCACGCTGCTCATCTCGTGCACGAACACGTTCACCGCGAAGGCGGCGTTCGGGCAGGCGTGCGGCGGCGAGCTCCAGGAGCAGTTCTTGACGGCTCTGGACGAAGCGCTCAAGTTCAGCAATGGGTTCTGCTTCGGCGACCTCTTCCCGTCGCTGCGGTTCATCGACGCCATGACCGGGCTGAGGAGCCGCCTGGAGCGACTGCGCTTGCAGCTGGACACCGTCTTCGACAAGATCGTCGCTCAGTGCGAGTCGAATCCGGGTGATTCCCTTGTCAACGTCCTGCTCAGGATCAAGGACCAGGGCGAGCTTGACTTCCCCTTTAGCTCAACACACGTCAAGGCAATTATACTGGATATGTTCACGGGAGGGACAGAGACGACATCATCTACCACCGAGTGGCTCATGTCGGAGTTGATGAGGAACCCAGAGGTGATGGCCAAGGTGCAGGCTGAGGTGCGAGGAGTATTCGACAACAAGAGCCCACAAGACCACGAGGGCCTGCTTGAAAACCTATCATACATGAAGTTGGTGATCAAGGAGACCCTGAGGCTGAATCCGGTGTTGCCGCTGCTACTCCCCCATTTATGTCGGGAGACCTGCGAAATCGGAGGGTATGAGATTGTGGAGGGCACCAGAGTGTTGATCAATTCGTGGGCGATGGCGAGGAGCCCCGAGTATTGGGACGATGCGGAGAAGTTCATACCAGAGAGGTTTGAGGATGGCACAGCGGACTTCAAAGGCTCCCGTTTTGAGTACTTGCCATTTGGGACCGGGAGAAGGAGGTGCCCTGGTGATATATTTGCAATGGCCACGCTGGAACTCATCGTGGCGCGCCTTCTATACTACTTCGACTGGAGCCTCCCGGATGGGATGCAGCCAGGTGATATCGACATGGAGCTCGTCGTTGGTGCAACGGCGAGGAGAAAGAATCATCTCCAGCTAGTGGCATCACCATATAAGCCGATTTCCATGCAAAGTTGATGGATGTGTGTGACTGTGTGTCGGTGTACTTGCGGTTCGCTTACGTGCTTGCATACCTCTTAATAAGTTTTGTTTGTCCTGGGGAAATGGACAAACAAATTAATAATACTAGTTGATACCCCGTGCTTTGCCGTGGGATGTGTGGATGAATGCATTTTATATATGATATAAATGATAGATGTACAAGTTT ]
[+] EMBL CB000436 [ CTGCTACTCCCCCATTTATGTCGGGAGACCTGCGAAATCGGAGGGTATCCCATTGTGGAGGGCACCAGAGTGTTGATCAATTCGTGGGCGATGGCGAGGAGCCCCGAGTATTGGGACGATGCGGAGAAGTTCATACCAGAGAGGTTTGAGGATGGCACAGCGGACTTCAAAGGCTCCCGTTTTGAGTACTTGCCATTTGGGACCGGGAGAAGGAGGTGCCCTGGTGATATATTTGCAATGGCCACGCTGGAACTCATCGTGGCGCGCCTTCTATACTACTTCGACTGGAGCCTCCCGGATGGGATGCAGCCAGGTGATATCGACATGGAGCTCGTCGTTGGTGCAACGGCGAGGAGAAAGAATCATCTCCAGCTAGTGGCATCACCATATAAGCCGATTTCCATGCAAAGTTGATGGATGTGTGTGACTGTGTGTCGGTGTACTTGCGGTTCGCTTACGTGCTTGCATACCTCTTAATAAGTTTTGTTTGTCCTGGGGAAATGGACAAACAAATTAATAATACTAGTTGATACCCCGTGCTTTGCCGTGGGATGTGTGGATGAATGCATTTTATATATGATATAAATGATAAATGTACAAGTCTAAATAATGTGAAAATGATATGGAGATAAT]
[+] EMBL AT003536 [ CCGTGCTTTGCCGTGGGATGTGTGGATGAATGCATTTTATATATGATATAAATGATAGATGTACAAGTTTAAAAAAaaaaaa ]
consensusID : consensus_13554#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence
[AAAGTTACAAAATATTTGATAAAAAAAGAACAAACACACTGATACATCCAAATGCTGGATGGATATGACGGCTGCCTGACCCAAAGCTGGATGGATGTGACCCCTGGTTTGGTTGCTTGTTGCTTGATGCATGAGGGTGTGATTTGTTATTCGCGTGTTTGGTGGTACCTTGTAAGGGTGCACGTAATGTTTGTCCCCGGATAATGGACAAACAAATAATAATTGTGAACAATATCATGGTACTACTACGTGATTTATTTCCCCCCACAAAATATTTGGATAAAAAAAA]
[+] EMBL BI812902 [AAAGTTACAAAATATTTGATAAAAAAAGAACAAACACACTGATACATCCAAATGCTGGATGGATATGACGGCTGCCTGACCCAAAGCTGGATGGATGTGACCCCTGGTTTGGTTGCTTGTTGCTTGATGCATGAGGGTGTGATTTGTTATTCGCGTGTTTGGTGGTACCTTGTAAGGGTGCACGTAATGTTTGTCCCCGGATAATGGACAAACAAATAATAATTGTGAACAATATCATGGTACTACTACGTGATTTATTTCCCCCCACAAAATATTTGGATAAAAAAAA]
consensusID : consensus_13554#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence
[AGTGTGTTTGTTCTTTTCTTATCATAGGTGTATTTGTTATTCGCGTGTTTGTGTACTTGTAAGGGGTGCCACCGTAATTGGTTGTCCCCGGATAATGACACAATAATAATGGACCATATCAGGTACTACTACGTATTTATTTAAAGTCCAAATATTGGATAATTATAAGAATCAAA]
[+] EMBL BI804822 [AGTGTGTTTGTTCTTTTCTTATCATAGGTGTATTTGTTATTCGCGTGTTTGTGTACTTGTAAGGGGTGCCACCGTAATTGGTTGTCCCCGGATAATGACACAATAATAATGGACCATATCAGGTACTACTACGTATTTATTTAAAGTCCAAATATTGGATAATTATAAGAATCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 AAACTGCCAAGTAAACCTACTCACCAATAATCCATCCTCGAATCCTCGATTTATCATGGA 60
consensus_13554#1 ------------------------------------------------------------
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 GATAAACTCGGCAGCCACCCTCACCCTCGTCTCTCTCCTCACCCTCCCCATTCTTCTGGC 120
consensus_13554#1 -------CTGCCAAGTAATTAAACCTAATCAATCATCAAGCCATATATACATCCTCTATC 53
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 GTTGCTGACCCGCAAGTCGTCGTCAAAGAAGAGGAGGCCTCCAGGGCCATGGAACCTCCC 180
consensus_13554#1 TATCGATCGATGATGGAGATAAACTCAGAAGCCACCGTCACCCTCGTCTCCGTCGTCACC 113
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CTTGGTCGGCGGCCTCCTCCACCTCCTCCGGTCGCATCCGCAGGTCGCGCTCCGCGAGCT 240
consensus_13554#1 CTGCCCATTCTTCTCGCGTTGCTGACCCGCAAGTCGTCGTCAAAGAAGAGACGGCCTCCG 173
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CGCCAGCAAGTACGGCCCGGTGATGTTCCTCCGGATGGGGCAGATCGACACGGTCGTCGT 300
consensus_13554#1 GGGCCATGGAACCTCCCCTTGGTCGGCGGCCTCCTCCACCTCCTCCGGTCGCAACCGCAG 233
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CTCATCGCCGGCGGCGGCGCAGGAGGTGCTCCGCGACAAGGACGTCATGTTCGCGTCGCG 360
consensus_13554#1 GTCGCACTCCGCGACCTCGCCGGCAAGTACGGCCCGGTGATGTTCCTGCGGACGGGGCAG 293
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 GCCGAGCCTCCTCGTCTCGGAGATCTTCTGCTACGACAACCTCGACGTCGGCTTCGCGCC 420
consensus_13554#1 GTGGACACCGTCGTGATCTCCTCGCCGGCGGCGGCGCAGGAGGTGCTCCGCGACAAGGAC 353
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CTACGGCGCCTACTGGCGGATGCTGCGCAAGCTCTGCACGGTGGAGCTCCTCAGCACCAA 480
consensus_13554#1 GTCACCTTCGCGTCGCGGCCGAGCCTCCTCGTCTCGGAGATCTTCTGCTACGGCAACCTC 413
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 GGTGGTGCGGCAGCTCGCGCCGGTCAGGAATGACGAGACGCTGACCCTCGTCAGGAACAT 540
consensus_13554#1 GACATCGGCTTCGCGCCCTACGGCGCCTACTGGCGGATGCTGCGCAAGCTCTGCACGGTG 473
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CAAGGCCGCCTCCTCCGGCCATGGCGGCGGCGGCGGCAAGAAGCCGGTCACCCTCGCCAG 600
consensus_13554#1 GAGCTCCTCAGCACCAAGATGGTGCGGCAGCTCGCGCCGATCAGGGACGGCGAGACGCTG 533
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 GCTGCTCACGACGTGCACGAACACGATCACCGCCAAGGCGGCGTTCGGGCAGGCGTGCGG 660
consensus_13554#1 GCCCTTGTCAGGAACATCGAGGCCGCCGCCGGCGGCAAGAAGCCGTTCACCCTCGCCACG 593
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CGTCGAGCTCCAGGAGCAGTTCTTGACGGCTCTGGACGTCGGGCTCAAGTTCAGCGGCGG 720
consensus_13554#1 CTGCTCATCTCGTGCACGAACACGTTCACCGCGAAGGCGGCGTTCGGGCAGGCGTGCGGC 653
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 ATTCTGCTTCGGCGACCTCTTCCCGTCGCTGCGGTTCATCGACGCCATGACCGGGCTGAG 780
consensus_13554#1 GGCGAGCTCCAGGAGCAGTTCTTGACGGCTCTGGACGAAGCGCTCAAGTTCAGCAATGGG 713
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 GAGCCGCCTGTGGCGAGCACGCGGGCAGCTGGACTCCGTCTTCGACAAGATCATCGCTCA 840
consensus_13554#1 TTCTGCTTCGGCGACCTCTTCCCGTCGCTGCGGTTCATCGACGCCATGACCGGGCTGAGG 773
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 GTGCGAGGAGCATCAGGGTGATTCCCTTGTCAACGTCCTTCTCAGGATCAGAGATCAGGG 900
consensus_13554#1 AGCCGCCTGGAGCGACTGCGCTTGCAGCTGGACACCGTCTTCGACAAGATCGTCGCTCAG 833
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CGACCTCGAATTCCCCTTCGGCACAACGAACATCAAGGCAATTATACTGGATATGTTCAC 960
consensus_13554#1 TGCGAGTCGAATCCGGGTGATTCCCTTGTCAACGTCCTGCTCAGGATCAAGGACCAGGGC 893
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 GGGAGGGACAGAGACGACGTCGTCGGCCGCGGAGTGGGTCATGTCGGAGCTCATGAGGAA 1020
consensus_13554#1 GAGCTTGACTTCCCCTTTAGCTCAACACACGTCAAGGCAATTATACTGGATATGTTCACG 953
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CCCTGAGGTAATGGCCAAGGTACAGGCCGAGGTGCGGCGAGTGTTCGACAACAAGAGCCC 1080
consensus_13554#1 GGAGGGACAGAGACGACATCATCTACCACCGAGTGGCTCATGTCGGAGTTGATGAGGAAC 1013
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 ACAAGACCATGAGGGCCTGATTGACAACCTACGCTACATGAAGATGGTGATCAAGGAGAC 1140
consensus_13554#1 CCAGAGGTGATGGCCAAGGTGCAGGCTGAGGTGCGAGGAGTATTCGACAACAAGAGCCCA 1073
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 TATGAGGTTGAATCCAGTGTTGCCGCTGCTGATGCCCCATCTCTGCCGGGAGACCTGCGA 1200
consensus_13554#1 CAAGACCACGAGGGCCTGCTTGAAAACCTATCATACATGAAGTTGGTGATCAAGGAGACC 1133
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CATTGGTGGTTATGAGGTCGTGGAGGGGACCAGGGTGGTGATCAATTCGTGGGCGATGGC 1260
consensus_13554#1 CTGAGGCTGAATCCGGTGTTGCCGCTGCTACTCCCCCATTTATGTCGGGAGACCTGCGAA 1193
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 GAGGAGCCCCGAGTACTGGGATGACGCGGAGGAGTTTAAGCCAGAGAGGTTTGAGGATGG 1320
consensus_13554#1 ATCGGAGGGTATGAGATTGTGGAGGGCACCAGAGTGTTGATCAATTCGTGGGCGATGGCG 1253
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CATGGCAGACTACAAAGGCTCCCGTTTTGAGTACTTGCCGTTTGGAACCGGGAGGAGGAG 1380
consensus_13554#1 AGGAGCCCCGAGTATTGGGACGATGCGGAGAAGTTCATACCAGAGAGGTTTGAGGATGGC 1313
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 ATGCCCTGGTGATACATTTGGTATGGTCTTGTTGGAGCTCATCGTGGCACGCCTTCTCTA 1440
consensus_13554#1 ACAGCGGACTTCAAAGGCTCCCGTTTTGAGTACTTGCCATTTGGGACCGGGAGAAGGAGG 1373
consensus_13554#2 ------------------------------------------------------------
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CTACTTCGATTGGAGCCTCCCTGCCGGAATGCAGCCGGATGATGTTGACATGGACTTCGT 1500
consensus_13554#1 TGCCCTGGTGATATATTTGCAATGGCCACGCTGGAACTCATCGTGGCGCGCCTTCTATAC 1433
consensus_13554#2 -----------AAAGTTACAAAATATTTGATAAAAAAAGAACAAACACACTGATACATCC 49
consensus_13554#3 ------------------------------------------------------------
consensus_13554#0 CGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCTAGTGGCGTCGCCATATAAGTT 1560
consensus_13554#1 TACTTCGACTGGAGCCTCCCGGATGGGATGCAGCCAGGTGATATCGACATGGAGCTCGTC 1493
consensus_13554#2 AAATGCTGGATGGATATGACGGCTGCCTGACCCAAAGC--TGGA-TGGATGTGACCCCTG 106
consensus_13554#3 -----------------------------------------------------------A 1
consensus_13554#0 GGCTCCTATCCAAATCTGATGGATATACGGCTCCTACC--CAAAGCTGATGGATGTATCA 1618
consensus_13554#1 GTTGGTGCAACGGCGAGGAGAAAGAATCATCTCCAGCTAGTGGCATCACCATATAAGCCG 1553
consensus_13554#2 GTTTGGTTGCTT-GTTGCTTGATGCATGAGGGTGTGATTTGTTATTCGCGTGTTTGGTG- 164
consensus_13554#3 GTGTGTTTGTTC-TTTTCTTATCATA----GGTGT-ATTTGTTATTCGCGTGTTTGT--- 52
consensus_13554#0 GTGTGTTTGTTC-TTTTCTTATCATA----GGTGT-ATTTGTTATTCGCGTGTTTGT--- 1669
consensus_13554#1 ATTTCCATGCAAAGTTGATGGATGTGTGTGACTGTGTGTCGGTGTACTTGCGGTTCGCTT 1613
* * ** ** * *** * * * * * * * **
consensus_13554#2 --GTACCTTGTAAGGGTGC--ACGTAAT-GTTTGTCCCCGGATAATGGACAAACAAAT-A 218
consensus_13554#3 --GTACTTGTAAGGGGTGCCACCGTAATTGGTTGTCCCCGGATAATG-------ACAC-A 102
consensus_13554#0 --GTACCTTGTAAGGGTGC--ACGTAAT-GTTTGTCCCCGGATAATGGACAAACAAAT-A 1723
consensus_13554#1 ACGTGCTTGCATACCTCTTAATAAGTTTTGTTTGTCCTGGGGAAATGGACAAACAAATTA 1673
** * * * * ****** ** **** * * *
consensus_13554#2 ATAATTGTGAACAATATCATGGTACTACTACGTGATTTATTTCCCC--CCACAAAATATT 276
consensus_13554#3 ATAATAATGGACCATATCA-GGTACTACTACGTATTTATTTAAAGT--CCAAATATTGGA 159
consensus_13554#0 ATAATTGTGAACAATATCA-TGTACTACTACGTATTTATTTAAAGTTACAAAATATTTGA 1782
consensus_13554#1 ATAATACTAGTTGATACCC-CGTGCTTTGCCGTGGGATGTGTGGATGAATGCATTTTATA 1732
***** * *** * ** ** *** * * *
consensus_13554#2 TG-GATAAAAAAAA-------------------------------------------- 289
consensus_13554#3 TA-ATTATAAGAATCAAA---------------------------------------- 176
consensus_13554#0 TA-ATTATTAAGAAAAAAAAAAA----------------------------------- 1804
consensus_13554#1 TATGATATAAATGATAGATGTACAAGTTTAAATAATGTGAAAATGATATGGAGATAAT 1790
* ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||