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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1540 fasta sequence
[CTTACCGAAGAAACGCCACGATTTTTTCACCCCGTGCCACGCCACGGCCACGGCCACGGTCGGCCACTCGGTTGGCGCCTCCCCGACGCACGACGACCCGCGGTTCCCTCCCGTCCCCGGCCGCCTCCTGCCTCCACGCGCGGCTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT-CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAG--TTTTTTTTTTTGGGAGCACACGGC-CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAGATCTGATAGAAAATAATAAGTAGCCCATA-A-TATTATAGCAGAAAAACAATGTTTATTACGACTTTAAAAGGAGAAAAAAAAAAA]
[+] EMBL AK068717 [CTTACCGAAGAAACGCCACGATTTTTTCACCCCGTGCCACGCCACGGCCACGGCCACGGTCGGCCACTCGGTTGGCGCCTCCCCGACGCACGACGACCCGCGGTTCCCTCCCGTCCCCGGCCGCCTCCTGCCTCCACGCGCGGCTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAG TTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAGATCTGATAGAAAATAATAAGTAGCCCATA A TATTATAGCAGAAAAACAATGTTT ]
[+] EMBL CB654966 [ TTCACCCCTTGCCACGCCACGGCCACGGCCACGGTCGGCCACTCGGTTGGCGCCTCCCCGACGCACGACGACCCGCGGTCCCCTCCCGTCCCCGGCCGCCTCCTGCCTCCACGCGCGGCTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCAGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAA ]
[+] EMBL AK099970 [ CCACGCCACGGCCACGGCCACGGTCGGCCACTCGGTTGGCGCCTCCCCGACGCACGACGACCCGCGGTTCCCTCCCGTCCCCGGCCGCCTCCTGCCTCCACGCGCGGCTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAGT TTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAA ]
[+] EMBL CB678391 [ GCGCCCCTCCGACGCACGACGACCCGCGGTTCCCTCCCGTCCCCGGCCGCCTCCTGCCTCCACGCGCGGCTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAG ]
[+] EMBL CB657481 [ CTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATC ]
[+] EMBL CB647328 [ CCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGTCCCCAC GGACGACTGGTACTGGCAGACAGATA ]
[+] EMBL CK085052 [ CTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGC ]
[-] EMBL CB657482 [ GGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAG TTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAG ]
[-] EMBL CB654967 [ AAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAG TTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAAATAAG GGGAAAATAATAAGTAGCCCATA A TATTATAGCATTAAAAgga ]
[-] EMBL CB678392 [ CAAGTTTAGGAGAAGTTATGAAGTTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGATTGGTATTGGCAGACAGATACATCTCACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACATAGGGTGTATTGTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGTTTTTAGATCAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCTTTGGGAAGATTGAAAGGATCAATCAAGACAGTATCAGCAGGCCTTTCAATCAAGTGGATGATGTGTTAGGTTCGTCTGTATTTGTTGATAGCCTGTAAGCACAAGTTTTTATTTTCGAG TTTTTTTTTGGGAGCACACGCCTCCTGATGTAGA ]
[-] EMBL CB647329 [ TATAATTATGT CCCCCGGGACGACTGGTATTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAG TTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAGATCTGATAGAAAATAATAAGTAGCCCATAGAGTATTATAGCAGAAAAACAATGTTTATTACGACTTTAAAAGGAGAAA ]
[+] EMBL AU162392 [ TGATNGCCTGTAAGCACAAGTTTTTNTTTGCGAGTTTTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAGATCTGATAGAAAATAATAAGTAGCCCATA A TATTATAGCAGAAAAACAATGTTTATTACGACTTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSR10131B [ TGATAGCCTGTAAGCACAAGTTTTTATTTGCGAGTTTTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAGATCTGATAGAAAATAATAAGTAGCCCATA A TATTATAGCA ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||