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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13575#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1703 fasta sequence
[GAGAAGCCATTGCACAATGATGTTACAGAGGCTGTTTTGAGTCTTCACAATGCTGGCGGGTAGCAACTGTGGTAGGTAGTGGGAGTTCCTACCTACCCCTCCCTGTCTTCCTACTAATTTGGTGGTGCGCATCATGGGTTCAAGGAGCAATCCGGCGGTTTGACTTCTCCGTCCGCACCTACTCTAGCCTTTGTTCAGTGGTACGAGGCGCCGCGCGAGCCTGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCCGCCGGAGGCCATGGAGATCCGCGTCAAGGTCGTCTCCACCTCCATCTGCCGCAGTGACGTCACCCAGTGGCAATCCACGGCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGTGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCATGTGCTCACCGTCTTCATCGGAGAGTGCATGAGCTGCAAGCACTGCGTTTCAGGGAAGAGCAACATGTGCCAGAAGCTCGGCCTGGAGAGGAGGGGTGTCATGCACAGCGATCAGAAGACCCGCTTCTCGCTCAGGGGGAAACCTGTGTACCATTACTGTGCAGTGTCAAGCTTCAGCGAGTACACGGTTGTGCACTCCGGTTGCGCGGTGAAGGTCGGCCCAACCGTGCCGATGGACAGGATATGCCTGCTGAGCTGTGGTGTATCTGCAGGGCTTGGTGCAGCCTGGAAGGTTGCTGATATCTCGAAGGGGTCGAGTGTGGTTATATTTGGCCTTGGAACTGTAGGGCTTTCTGTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGTGTGATTCACATGCCTCAGTGACAGGGTTGGACAACTAAGTGTTATCGTATCTCTACAATTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTCTATGTTTCCACCTTGGAAGTTTTGATGCTGTCTAACTTTGTGTACCTATCTCAAGAATTATTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGTTCCATGTATAGGCCAAGATCTATCTTCTTCCAGAGCTTCCTGCTTCAAATGAATCATGTAAAACTGAAGGACAGCGTAAAGGAAATGAAATTACATTCACTGAAAAAAAGGA]
[+] EMBL AK073849 [GAGAAGCCATTGCACAATGATGTTACAGAGGCTGTTTTGAGTCTTCACAATGCTGGCGGGTAGCAACTGTGGTAGGTAGTGGGAGTTCCTACCTACCCCTCCCTGTCTTCCTACTAATTTGGTGGTGCGCATCATGGGTTCAAGGAGCAATCCGGCGGTTTGACTTCTCCGTCCGCACCTACTCTAGCCTTTGTTCAGTGGTACGAGGCGCCGCGCGAGCCTGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCCGCCGGAGGCCATGGAGATCCGCGTCAAGGTCGTCTCCACCTCCATCTGCCGCAGTGACGTCACCCAGTGGCAATCCACGGCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGTGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCATGTGCTCACCGTCTTCATCGGAGAGTGCATGAGCTGCAAGCACTGCGTTTCAGGGAAGAGCAACATGTGCCAGAAGCTCGGCCTGGAGAGGAGGGGTGTCATGCACAGCGATCAGAAGACCCGCTTCTCGCTCAGGGGGAAACCTGTGTACCATTACTGTGCAGTGTCAAGCTTCAGCGAGTACACGGTTGTGCACTCCGGTTGCGCGGTGAAGGTCGGCCCAACCGTGCCGATGGACAGGATATGCCTGCTGAGCTGTGGTGTATCTGCAGGGCTTGGTGCAGCCTGGAAGGTTGCTGATATCTCGAAGGGGTCGAGTGTGGTTATATTTGGCCTTGGAACTGTAGGGCTTTCTGTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGTGTGATTCACATGCCTCAGTGACAGGGTTGGACAACTAAGTGTTATCGTATCTCTACAATTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTCTATGTTTCCACCTTGGAAGTTTTGATGCTGTCTAACTTTGTGTACCTATCTCAAGAATTATTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGTTCCATGTATAGGCCAAGATCTATCTTCTTCCAGAGCTTCCTGCTTCAAATGAATCATGTAAAACTGAAGGACAGCGTAAAGGAAATGAAATTACATTCACTGAtt ]
[+] EMBL CA753154 [ GTAGGTAGTGGGAGTTCCTACCTACCCCTCCCTGTCTTCCTACTAATTTGGTGGTGCGCATCATGGGTTCAAGGAGCAATCCGGCGGTTTGACTTCTCCGTCCGCACCTACTCTAGCCTTTGTTCAGTGGTACGAGGCGCCGCGCGAGCCTGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCTGCCGGAGGCCATGGAGATCCGCGTCAAGGTCGTCTCCACCTCCATCTGCCGCAGTGACGTCACCCAGTGGCAATCCACGGCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGAGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTNCGAAGTGGGAGACCATGTGCTCACCGTCTTCATCGGAGAGTGCATGAGCTGCAAGCACTGC ]
[+] EMBL CB622905 [ CTACCCCTCCCTGTCTTCCTACTAATTTGGTGGTGCGCATCATGGGTTCAAGGAGCAATCCGGCGGTTTGACTTCTCCGTCCGCACCTACTCTAGCCTTTGTTCAGTGGTACGAGGCGCCGCGCGAGCCTGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCTGCCGGAGGCCATGGAGATCCGCGTCAAGGTCGTCTCCACCTCCATCTGCCGCAGTGACGTCACCCAGTGGCAATCCACGGCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGAGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCATGTGCTCACCGTCTTCATCGGAGAGTGCATGAGCTGCAAGCACTGCGTTTCAGGGAAGAGCAACATGTGCCAGAAGCTCGGCCTGGAGAGGAGGGGTGTCATGCACAGCGATCAGAAGACCCGCTTCTCGCTCAGGGGGAAACCTGTGTACCATTACTGTGCAGTGTCAAGCTTCAGCGAGTACACGGTTGTGCACTCCGGTTGCGCGGTGAAGGTCGGCCCAACCGTGCCGATGGACAGGATATGCCTGCTGAGCTGTGGTGTATCTGCAGGGCTTGGTGCAGCCTGGAAGGTTGCTGATATCTCGAAGGGGTCGAGTGTGGTTATATTTGGCCTTGGAACTGTANGGCTTTCTGTTGCTCAAGGTGCTAAGCTGCGCGGGGCTT ]
[+] EMBL BP184659 [ AGGAGCAATCCGGCGGTTTGACTTCTCCGTCCGCACCTACTCTAGCCTTTGTTCAGTGGTACGAGGCGCCGCGCGAGCCTGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCCGCCGG ]
[+] EMBL OSS1677A [ TGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCATGTGCTCACCGTCTTCATCGGAGAGTGCATGAGCTGCAAG ACTGCGTTTCAGGGAAGAGCAACATGTGCCANAAGCTCGGCCTGGAGAGGAGGGGTGTCATGCACAGCGATCAGAAGACCCGCTTCTCGCTCAGGGGGAAACCTGTGTACCATTACTGTGCAGTGTCAAGCTTCAGCGAGTACACGGTTGTGCACTCCGGTTGCGCGGTGAAGGTCGGCCCAACCGTGCCGATGGACAGGATATGCCTNCTGAGCTG ]
[-] EMBL CB648829 [ ttctGTGCTAAGCTGCGCGGGGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGTGTGATTCACATGCCTCAGTGACAGGGTTGGACAACTAAGTGTTATCGTATCTCTACAATTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTCTATGTTTCCACCTTGGAAGTTTTGATGCTGTCTAACTTTGTGTACCTATCTCAAGAATTATTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGTTCCATGTATAGGCCAAGATCTATCTTCTTCCAGAGCTTCCTGCTTCAAATGAATCATGTAAAACTGAAGGACAGCGTAAAGGAAATGAAATTACATTCACTGAAAAAAAGGA]
[+] EMBL BP184660 [ CTGTTCAGCAGGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGTGTGATTCACATGCCTCAGTGACAGGGTTGGACAACTAAGTGTTATCGTATCTCTACAATTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTCTATGTTTCCACCTTGGAAGTTTTGATGCTGTCTAACTTTGTGTACCTATCTCAAGAATTATTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGTTCCATGTATAGGCCAAGATCTATCTTCTTCCAGAGCTTCCTGCTTCAAATGAATCATGTAAAACTGAAGGACAGCGTAAAGGAAATGAAATTACATTCACTTAAA ]
consensusID : consensus_13575#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1349 fasta sequence
[GGCGGTTTGACTTCTCCGTCCGCACCTACTCTAGCCTTTGTTCAGTGGTACGAGGCGCCGCGCGAGCCTGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCCGCCGGAGGCCATGGAGATCCGCGTCAAGGTCGTCTCCACCTCCATCTGCCGCAGTGACGTCACCCAGTGGCAATCCACGGCTCATGCACAGCGATCAGAAGACCCGCTTCTCGCTCAGGGGGAAACCTGTGTACCATTACTGTGCAGTGTCAAGCTTCAGCGAGTACACGGTTGTGCACTCCGGTTGCGCGGTGAAGGTCGGCCCAACCGTGCCGATGGACAGGATATGCCTGCTGAGCTGTGGTGTATCTGCAGGGCTTGGTGCAGCCTGGAAGGTTGCTGATATCTCGAAGGGGTCGAGTGTGGTTATATTTGGCCTTGGAACTGTAGGGCTTTCTGTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGTGTGATTCACATGCCTCAGTGACAGGGTTGGACAACTAAGTGTTATCGTATCTCTACAATTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTCTATGTTTCCACCTTGGAAGTTTTGATGCTGTCTAACTTTGTGTACCTATCTCAAGAATTATTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGTTCCATGTATAGGCCAAGATCTATCTTCTTCCAGAGCTTCCTGCTTCAAATGAATCATGTAAAACTGAAGGACAGCGTAAAGGAAATGAAATTACATTCACTGATT]
[+] EMBL AK061291 [GGCGGTTTGACTTCTCCGTCCGCACCTACTCTAGCCTTTGTTCAGTGGTACGAGGCGCCGCGCGAGCCTGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCCGCCGGAGGCCATGGAGATCCGCGTCAAGGTCGTCTCCACCTCCATCTGCCGCAGTGACGTCACCCAGTGGCAATCCACGGCTCATGCACAGCGATCAGAAGACCCGCTTCTCGCTCAGGGGGAAACCTGTGTACCATTACTGTGCAGTGTCAAGCTTCAGCGAGTACACGGTTGTGCACTCCGGTTGCGCGGTGAAGGTCGGCCCAACCGTGCCGATGGACAGGATATGCCTGCTGAGCTGTGGTGTATCTGCAGGGCTTGGTGCAGCCTGGAAGGTTGCTGATATCTCGAAGGGGTCGAGTGTGGTTATATTTGGCCTTGGAACTGTAGGGCTTTCTGTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGTGTGATTCACATGCCTCAGTGACAGGGTTGGACAACTAAGTGTTATCGTATCTCTACAATTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTCTATGTTTCCACCTTGGAAGTTTTGATGCTGTCTAACTTTGTGTACCTATCTCAAGAATTATTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGTTCCATGTATAGGCCAAGATCTATCTTCTTCCAGAGCTTCCTGCTTCAAATGAATCATGTAAAACTGAAGGACAGCGTAAAGGAAATGAAATTACATTCACTGATT]
[-] EMBL CB623359 [ GTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATGACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGTGTGATTCACATGCCTCAGTGACAGGGTTGGACAACTAAGTGTTATCGTATCTCTACAATTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATAATCACATCATTCTATGTTTCCACCTTGGAAGTTTTGATGCTGTCTAACTTTGTGTACCTATCTCAAGAATTATTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGTTCCATGTATAGGCCAAGATCTATCTTCTTCCAGAGCTTCCTGCTTCAAATGAATCATGTAAAACGGAAGGACAGCGTAAAGGAAATGAAATTACATTC ]
consensusID : consensus_13575#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 800 fasta sequence
[CAGCCTGGAAGGTTGCTGATATCTCGAAGGGGCCTAGTGTGGTTATATTTGGCCTTGGAACTGTAGGGCTTTCTGTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGTAATTTTTATTCCTTTCCATTGCACTACAATTCCACCTATTCTGCCCAGATATATTATCTTCTCATGTTTTGGTCTTCTTAGGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGTGTGATTCACATGCCTCAGTGACAGGGTTGGACAACTAAGTGTTATCGTATCTCTACAATTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTCTATGTTTCCACCTTGGAAGTTTTGATGCTGTCT]
[+] EMBL CB000294 [CAGCCTGGAAGGTTGCTGATATCTCGAAGGGGCCTAGTGTGGTTATATTTGGCCTTGGAACTGTAGGGCTTTCTGTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGTAATTTTTATTCCTTTCCATTGCACTACAATTCCACCTATTCTGCCCAGATATATTATCTTCTCATGTTTTGGTCTTCTTAGGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGTGTGATTCACATGCCTCAGTGACAGGGTTGGACAACTAAGTGTTATCGTATCTCTACAATTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTCTATGTTTCCACCTTGGAAGTTTTGATGCTGTCT]
[+] EMBL CA999554 [ GCCTGGAAGGTTGCTGATATCTCGAAGGGGTCGAGTGTGGTTATATTTGGCCTTGGAACTGTAGGGCTTTCTGTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGTAATTTTTATTCCTTTTCATTGCACTACAATTCCAC ]
consensusID : consensus_13575#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[GGGATGTTGGTGCAATGTGCAGATGGACAATGCAAGACAAAGGGCAACTGTGGAACTGGATGGCTGAGAAACACACAAGTGGTTTCGCAGATGTGGTGGATTGCAACAATGGCACTCAAGTGACCAAGGGGGTTTGGACCAACTGAAAGTGGTTAATGCGTGATGCTCTGACAAATGTGTGTTGTGCGCTGTTGATGCTCCAGTGCGTGGAAGTTTTGCATGCAGCAAATGCAGGATGAATGCAACAATGCACTTGCTGATGGTTTGCCAACCTGTGGGAAAGTGTGTTGGATGGCTGGTGCTGAACTGTGTGGTGGTGACCACTATCTCAAGAATTATTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGTTCCATGTATAGGCCAAGATCTATCAAAAAAAAAA]
[+] EMBL BI813246 [GGGATGTTGGTGCAATGTGCAGATGGACAATGCAAGACAAAGGGCAACTGTGGAACTGGATGGCTGAGAAACACACAAGTGGTTTCGCAGATGTGGTGGATTGCAACAATGGCACTCAAGTGACCAAGGGGGTTTGGACCAACTGAAAGTGGTTAATGCGTGATGCTCTGACAAATGTGTGTTGTGCGCTGTTGATGCTCCAGTGCGTGGAAGTTTTGCATGCAGCAAATGCAGGATGAATGCAACAATGCACTTGCTGATGGTTTGCCAACCTGTGGGAAAGTGTGTTGGATGGCTGGTGCTGAACTGTGTGGTGGTGACCACTATCTCAAGAATTATTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGTTCCATGTATAGGCCAAGATCTATCAAAAAAAAAA]
consensusID : consensus_13575#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence
[GAGCCTCCCTGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGGTACGTACGAGCCCCCCCTCGGCCGAGTTACTCCCTGCTCCGTTGCGTGGTTTTGTGGTGGTGATTTTGGTGGATGGGATATGCCTGCGTTGCGTGCAGCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCTGCCGGAGGCCATGGAGATCCGCGTCATGGTCGTCTCCACCTCCATCTGCCGCATTGACCTTACCCAGTGGCAATCTGCGGCTCAAGCCTGATCTGTTCCCCAT]
[+] EMBL CB623358 [GAGCCTCCCTGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGGTACGTACGAGCCCCCCCTCGGCCGAGTTACTCCCTGCTCCGTTGCGTGGTTTTGTGGTGGTGATTTTGGTGGATGGGATATGCCTGCGTTGCGTGCAGCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCTGCCGGAGGCCATGGAGATCCGCGTCATGGTCGTCTCCACCTCCATCTGCCGCATTGACCTTACCCAGTGGCAATCTGCGGCTCAAGCCTGATCTGTTCCCCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13575#1 ------------------------------------------------------------
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 GAGAAGCCATTGCACAATGATGTTACAGAGGCTGTTTTGAGTCTTCACAATGCTGGCGGG 60
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 ------------------------------------------------------------
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 TAGCAACTGTGGTAGGTAGTGGGAGTTCCTACCTACCCCTCCCTGTCTTCCTACTAATTT 120
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 ------------------------------------------------------------
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 GGTGGTGCGCATCATGGGTTCAAGGAGCAATCCGGCGGTTTGACTTCTCCGTCCGCACCT 180
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 ------------------------------------------------------------
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 ACTCTAGCCTTTGTTCAGTGGTACGAGGCGCCGCGCGAGCCTGCCGGAATGGCCGCGGCG 240
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 ------------------------------------------------------------
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 TCGTCTCCGGCGGCGGCCATCACCTGCCGAGCGGCGGTGGCGTGGGCGCCCGGTCAGGCG 300
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 -------------------------------------------------GGCGGTTTGAC 11
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 CTGGTGATGGAGGAGGTGGAGGTGGCGCCGCCGGAGGCCATGGAGATCCGCGTCAAGGTC 360
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 TTCTCCGTCCGCACCTACTCTAGCCTTTGTTCAGTGGTACGAGGCGCCGCGCGAGCCTGC 71
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 GTCTCCACCTCCATCTGCCGCAGTGACGTCACCCAGTGGCAATCCACGGCTCAAACCGAT 420
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 CGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGCGGCGGTGGCGTG 131
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 CTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGTGTGGTTGAGAGTGTTGGTGAAGGT 480
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 GGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCCGCCGGAGGCCATGGA 191
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 GTGACCGAGTTCGAAGTGGGAGACCATGTGCTCACCGTCTTCATCGGAGAGTGCATGAGC 540
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 GATCCGCGTCAAGGTCGTCTCCACCTCCATCTGCCGCAGTGACGTCACCCAGTGGCAATC 251
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 TGCAAGCACTGCGTTTCAGGGAAGAGCAACATGTGCCAGAAGCTCGGCCTGGAGAGGAGG 600
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 CACGGCTCATGCACAGCGATCAGAAGACCCGCTTCTCGCTCAGGGGGAAACCTGTGTACC 311
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 GGTG--TCATGCACAGCGATCAGAAGACCCGCTTCTCGCTCAGGGGGAAACCTGTGTACC 658
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 ATTACTGTGCAGTGTCAAGCTTCAGCGAGTACACGGTTGTGCACTCCGGTTGCGCGGTGA 371
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 ATTACTGTGCAGTGTCAAGCTTCAGCGAGTACACGGTTGTGCACTCCGGTTGCGCGGTGA 718
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 AGGTCGGCCCAACCGTGCCGATGGACAGGATATGCCTGCTGAGCTGTGGTGTATCTGCAG 431
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 AGGTCGGCCCAACCGTGCCGATGGACAGGATATGCCTGCTGAGCTGTGGTGTATCTGCAG 778
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 GGCTTGGTGCAGCCTGGAAGGTTGCTGATATCTCGAAGGGGTCGAGTGTGGTTATATTTG 491
consensus_13575#2 ---------CAGCCTGGAAGGTTGCTGATATCTCGAAGGGGCCTAGTGTGGTTATATTTG 51
consensus_13575#0 GGCTTGGTGCAGCCTGGAAGGTTGCTGATATCTCGAAGGGGTCGAGTGTGGTTATATTTG 838
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 GCCTTGGAACTGTAGGGCTTTCTGTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAA 551
consensus_13575#2 GCCTTGGAACTGTAGGGCTTTCTGTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAA 111
consensus_13575#0 GCCTTGGAACTGTAGGGCTTTCTGTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAA 898
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 TTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAG 611
consensus_13575#2 TTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAG 171
consensus_13575#0 TTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGGGAAAGCTTTTGGTGTCACAG 958
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 ATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCA 671
consensus_13575#2 ATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCA 231
consensus_13575#0 ATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGGTGGTGAAGCGGCTGACCA 1018
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 ATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCAC 731
consensus_13575#2 ATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCAC 291
consensus_13575#0 ATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCAC 1078
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 TGCAATCATGTTCTGATG------------------------------------------ 749
consensus_13575#2 TGCAATCATGTTCTGATGTAATTTTTATTCCTTTCCATTGCACTACAATTCCACCTATTC 351
consensus_13575#0 TGCAATCATGTTCTGATG------------------------------------------ 1096
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 -----------------------------------------GTTGGGGGCTGACTGTAAC 768
consensus_13575#2 TGCCCAGATATATTATCTTCTCATGTTTTGGTCTTCTTAGGGTTGGGGGCTGACTGTAAC 411
consensus_13575#0 -----------------------------------------GTTGGGGGCTGACTGTAAC 1115
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 ------------------------------------------------------------
consensus_13575#1 TCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGG 828
consensus_13575#2 TCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGG 471
consensus_13575#0 TCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGG 1175
consensus_13575#4 -------------------------GAGCCTCC--CTGAATGGCCGCGGCGTC-GTCTCC 32
consensus_13575#3 -------------------------GGGATGTTGGTGCAATGTGCAGATGGACAATGCAA 35
* * * * * * *
consensus_13575#1 AAGAACATTGAAGGGGTCTTTGT-TTGGAGGATGGAGACCTAAATCTGATCTACCTTTGT 887
consensus_13575#2 AAGAACATTGAAGGGGTCTTTGT-TTGGAGGATGGAGACCTAAATCTGATCTACCTTTGT 530
consensus_13575#0 AAGAACATTGAAGGGGTCTTTGT-TTGGAGGATGGAGACCTAAATCTGATCTACCTTTGT 1234
consensus_13575#4 G--------GCGGCGGCCATCAC-CTG-----CCGAGGTACGTACGAGCCCCCCCTCGGC 78
consensus_13575#3 GACAA----AGGGCAACTGTGGAACTGGATGGCTGAGAAACACACAAGTGGTTTCGCAGA 91
* * ** *** * * * *
consensus_13575#1 T-AGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTG 946
consensus_13575#2 T-AGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTG 589
consensus_13575#0 T-AGTGGACAAGTATGCAAACAAGGAAATCCAAGTCGATGACCTTGTTACACATGATTTG 1293
consensus_13575#4 CGAGTTACTCCCTGCTCCGTTGCGTGGTTTTGTGGTGGTGATTTTGGTGGATGGGATATG 138
consensus_13575#3 T--GTGGTGGATTGC---AACAATGGCACTCAAG----TGACC------AAGGGGGTTTG 136
** * * *** * * * **
consensus_13575#1 TCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGT 1006
consensus_13575#2 TCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGT 649
consensus_13575#0 TCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTTTGCGATGT 1353
consensus_13575#4 CC--TGCGTTGCGTGCA-GCGGCGGTGGCGTGGGCGCCCGGT--CAGGCGCTGGTGATGG 193
consensus_13575#3 ------GACCAACTGAAAGTGGTTAATGCGT-GATGCTCTGA--CAAATGT--GTGTTGT 185
* * ** * * ** ** * * * **
consensus_13575#1 GTGATTCACATGCCTCAGTGACAG-GGTTGGACAACTAAGTGTTATCGT-ATCTCTACAA 1064
consensus_13575#2 GTGATTCACATGCCTCAGTGACAG-GGTTGGACAACTAAGTGTTATCGT-ATCTCTACAA 707
consensus_13575#0 GTGATTCACATGCCTCAGTGACAG-GGTTGGACAACTAAGTGTTATCGT-ATCTCTACAA 1411
consensus_13575#4 AGGAGGTGGAGGTGGCGCTGCCGGAGGCCATGGAGATCCGCGTCATGGTCGTCTCCACC- 252
consensus_13575#3 GCGCTGTTGATGCTCCAGTGCGTG-------GAAGTTTTGCAT----GCAGCAAATGCAG 234
* * * * ** * * * * * * *
consensus_13575#1 TTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTC 1124
consensus_13575#2 TTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTC 767
consensus_13575#0 TTTTTTCGCTTTATCTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTC 1471
consensus_13575#4 TCCATCTGCCGCATTGACCTTACCCAGTGGCAATCTGCGGCTCAAGCCTGATCTGTTCCC 312
consensus_13575#3 GATGAATGCAACAATGCACTTGC----TGATGGTTTGCCAACCTGTGGGAAAGTGTGTTG 290
** * * * * ** *
consensus_13575#1 TATGTTTCCACCTTGGAAGTTTTGATGCTGTCTAACTTTGTGTACCTATCTCAAGAATTA 1184
consensus_13575#2 TATGTTTCCACCTTGGAAGTTTTGATGCTGTCT--------------------------- 800
consensus_13575#0 TATGTTTCCACCTTGGAAGTTTTGATGCTGTCTAACTTTGTGTACCTATCTCAAGAATTA 1531
consensus_13575#4 CAT--------------------------------------------------------- 315
consensus_13575#3 GATGGCTG-GTGCTGAACTGTGTGGTGGTGACCA-----------CTATCTCAAGAATTA 338
**
consensus_13575#1 TTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGT 1244
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 TTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGT 1591
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 TTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTATTGATGT 398
consensus_13575#1 TCCATGTATAGGCCAAGATCTATCTTCTTCCAGAGCTTCCTGCTTCAAATGAATCATGTA 1304
consensus_13575#2 ------------------------------------------------------------
consensus_13575#0 TCCATGTATAGGCCAAGATCTATCTTCTTCCAGAGCTTCCTGCTTCAAATGAATCATGTA 1651
consensus_13575#4 ------------------------------------------------------------
consensus_13575#3 TCCATGTATAGGCCAAGATCTATCAAAAAAAAAA-------------------------- 432
consensus_13575#1 AAACTGAAGGACAGCGTAAAGGAAATGAAATTACATTCACTGATT------- 1349
consensus_13575#2 ----------------------------------------------------
consensus_13575#0 AAACTGAAGGACAGCGTAAAGGAAATGAAATTACATTCACTGAAAAAAAGGA 1703
consensus_13575#4 ----------------------------------------------------
consensus_13575#3 ----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||