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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 791 fasta sequence
[TACGCCACGCCGCAGCCGCACAAGACTTGATCCTCTTCTTCTTCTTCTTCTTCCTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCAGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGATGGATGGATGTAA]
[+] EMBL CF335436 [TACGCCACGCCGCAGCCGCACAAGACTTGATCCTCTTCTTCTTCTTCTTCTTCCTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCAGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTA ]
[+] EMBL AK067481 [ AGCCGCACAAGACTTGATCCTCTTCTTCTTCTTCTTCTTCCTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCAGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGATGGATGGATGTA ]
[+] EMBL AU068751 [ CTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTNGGCTTCGCCACCTCGCAACTNGCCGGCCTCAGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTNAAACCACAAGACGAAGAAGCAGCAGTTTGTGAA CTGCAGTACAAGAAGNTGTTGTGGGA ]
[-] EMBL CB635303 [ TGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTGTCGGATTCGCCACCTCGCAACTCGCCGGCGTCAGCCTCGGCCTATCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATCAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATTGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGACGGTAATTAATACTGTAT ]
[+] EMBL CB635302 [ GCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCAGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATCAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATTGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTG ]
[-] EMBL CF279406 [ CCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCGTTTCGGTCGAGTTCCTAATTAAaaa ]
[+] EMBL AK059567 [ AAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGATGGATGGATGTAA]
[-] EMBL CB000866 [ GCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGATGGATGGATG ]
[+] EMBL CA999736 [ AAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAAaaaaaaaa ]
[-] EMBL AU225879 [ ccgcTCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTagcggc ]
[-] EMBL CA998963 [ CAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGATGGATGGATG ]
consensusID : consensus_13577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[TGAAGGAGTAGAAAAGCCGCACAATTCTTGATCCTCTTCTTCTTCTAATTCTCCCTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCTTTCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCTGTTCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCANATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGT]
[+] EMBL CF279407 [TGAAGGAGTAGAAAAGCCGCACAATTCTTGATCCTCTTCTTCTTCTAATTCTCCCTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCTTTCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCTGTTCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCANATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGT]
consensusID : consensus_13577#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[AGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCANTTTAAAAAAAAAAAAAAAAA]
[+] EMBL AU174942 [AGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCANTTTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13577#0 -TACGCCACGCCGCAGCCGCACAAGACTTGATCCTCTTCTTCTTCTTCTTCTTCCTCCAG 59
consensus_13577#1 TGAAGGAGTAGAAAAGCCGCACAATTCTTGATCCTCTTCTTCTTCTAATTCTCCCTCCAG 60
consensus_13577#2 ------------------------------------------------------------
consensus_13577#0 GCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTC 119
consensus_13577#1 GCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTC 120
consensus_13577#2 ------------------------------------------------------------
consensus_13577#0 CTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTC 179
consensus_13577#1 CTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTC 180
consensus_13577#2 ------------------------------------------------------------
consensus_13577#0 AGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCAC 239
consensus_13577#1 TTTCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCTGTTCCAAGCTCCAC 240
consensus_13577#2 ----------------------------------------------------AGCTCCAC 8
********
consensus_13577#0 CCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAG 299
consensus_13577#1 CCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAG 300
consensus_13577#2 CCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAG 68
************************************************************
consensus_13577#0 GTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAG 359
consensus_13577#1 GTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAG 360
consensus_13577#2 GTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAG 128
************************************************************
consensus_13577#0 CTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAG 419
consensus_13577#1 CTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAG 420
consensus_13577#2 CTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAG 188
************************************************************
consensus_13577#0 ACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAG 479
consensus_13577#1 ACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAG 480
consensus_13577#2 ACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAG 248
************************************************************
consensus_13577#0 AAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCC 539
consensus_13577#1 AAATAAATCANATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCC 540
consensus_13577#2 AAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCC 308
********** *************************************************
consensus_13577#0 GCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGA 599
consensus_13577#1 GCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGA 600
consensus_13577#2 GCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGA 368
************************************************************
consensus_13577#0 TGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTT 659
consensus_13577#1 TGCAATTTATTGTAGAGTACTACAGT---------------------------------- 626
consensus_13577#2 TGCANTTTAAAAAAAAAAAAAAAAA----------------------------------- 393
**** **** * * * * *
consensus_13577#0 CCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACT 719
consensus_13577#1 ------------------------------------------------------------
consensus_13577#2 ------------------------------------------------------------
consensus_13577#0 AGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGAT 779
consensus_13577#1 ------------------------------------------------------------
consensus_13577#2 ------------------------------------------------------------
consensus_13577#0 GGATGGATGTAA 791
consensus_13577#1 ------------
consensus_13577#2 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||