These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1077 fasta sequence [GAGACGTGGACATGAATCAAATCAAATCAAATCCCCAAATCAAAGTTAACCAAAATTCCGTGGCAGAGGTCTCCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAGCCGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTAC-TACCGGATGAAGTTTGGCCCTATTCA-GTTTGAGCATGCAACTGC-TCGTATGACAGAGATATTTAGAGGAC-TTGGGATGGA-ATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGCTCATAACTCTTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTTACTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCTGCAAGAAAGGTGGGCATAGAAGGAGCAGAAGAACTTCTTCAAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATGGGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAA-ATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAG---ATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCAAAAAACGGCTTTTTTTTTTTGGCTCCTGTGAAAAAAAAAAAAAAAAAAAA] [+] EMBL C26259 [GAGACGTGGACATGAATCAAATCAAATCAAATCCCCAAATCAAAGTTAACCAAAATTCCGTGGCAGAGGTCTCCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAG CGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTACTTACCGGATGAAGTTTGGCCCTATTCANGTTTGAGCATGCAACTGCTTCGTATGACAGGGATATTTGGGGGACTTTGGGATGGATAT TGACATGTCT ] [+] EMBL CF335362 [ GTGGACATGAATCAAATCAAATCAAATCCCCAAATCAAAGTTAACCAAAATTCCGTGGCAGAGGTCTCCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAGCCGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTAC TACCGGATGAAGTTTGGCCCTATTCA GTTTGAGCATGCAACTGC TCGTATGACAGAGATATTTAGAGGAC TTGGGATGGA ATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGCTCATAACTCTTGCTGGGCACCAAGGTTATGACAAAACAAGTGCTCTTGTTGAAGAATTATTCCA ] [+] EMBL CF296637 [ CCAAAATTCCGTGGCAGAGGTCTCCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAGCCGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTAC TACCGGATGAAGTTTGGCCCTATTCA GTTTGAGCATGCAACTGC TCGTATGACAGAGATATTTAGAGGAC TTGGGATGGA ATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGCTCATAACTCTTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTTACTTTTG ] [+] EMBL CB678738 [ CCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAGCCGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTAC TACCGGATGAAGTTTGGCCCTATTCA GTTTGAGCATGCAACTGC TCGTATGACAGAGATATTTAGAGGAC TTGGGATGGA ATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGCTCATAACTCTTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTTACTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCTGCAAGAAAGGTGGGCATAGAAGGAGCAGAAGAACTTCTTCAAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATGGGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAA ATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAG ATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGCATGTGCAAAATAGAAATAAAGCTGGTTTGCAGGAAAGAATAAGA ] [+] EMBL AU096720 [ TCTTCTTGGAGTCGTCTCCTCGCGCAA NCGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTAC TACCGGATGAAGTTTGGCCCTATTCA GTTTGAGCATGCAACTGC TCGTATGACAGAGATATTTAGAGGAC TTGGGATGGA ATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCAT ] [+] EMBL AU096721 [ TGCTCTTGTTGAAGAATTATTCCAAAGTTACTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCTGCAAGAAAGGTGGGCATAGAAGGAGCAGAAGAACTTCTTCAAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATGGGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAA ATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAG ATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCACGCACCGGCTTTTTTTTTTTGGCTCCTGTGAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF335361 [ TATTCCAAAGTTACTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCTGCAAGAAAGGTGGGCATAGAAGGAGCAGAAGAACTTCTTCAAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATGGGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAA ATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAG ATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCAAAAAA ] [-] EMBL CF296638 [ TCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATGGGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAANATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAGAANATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCAAAAAA ] consensusID : consensus_13578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [GGCCCTATTCAGTTTGAGCATGCAACTGCTCGTATGACAGAGATATTTAGAGGTCTTGGGATGGAATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGGTCATAACTCTTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTTCCTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCCGCAAGAAAGGTGGGCATAGAAGGAGCCGAAGAACTTCTTCTAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTATGGGGTTCCTCACTTTGTGATAAAAGGGAAATTTCAGGTCACCGGCGGCCAGCCTCCAAATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAGATGGGGCTCCATGATTGTGCGCGTGGGAAACCCTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGTTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTCCATTTTTAACAGCTGTATATAGCCAGGAAAAATTGAGATCGCTGTGAAGAAAAAAACAAACAAAAAGGGA] [-] EMBL CB678739 [GGCCCTATTCAGTTTGAGCATGCAACTGCTCGTATGACAGAGATATTTAGAGGTCTTGGGATGGAATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGGTCATAACTCTTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTTCCTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCCGCAAGAAAGGTGGGCATAGAAGGAGCCGAAGAACTTCTTCTAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTATGGGGTTCCTCACTTTGTGATAAAAGGGAAATTTCAGGTCACCGGCGGCCAGCCTCCAAATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAGATGGGGCTCCATGATTGTGCGCGTGGGAAACCCTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGTTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTCCATTTTTAACAGCTGTATATAGCCAGGAAAAATTGAGATCGCTGTGAAGAAAAAAACAAACAAAAAGGGA] consensusID : consensus_13578#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 293 fasta sequence [CATTNGAATTCGGCACNAGTTTTGATGTTGCTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTACAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCAAAAAAAAAAAAAAAAA] [+] EMBL AI096174 [CATTNGAATTCGGCACNAGTTTTGATGTTGCTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTACAGGTTACTTAAAGCATGTGCAAAATANAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCAAAAAAAAAAAAAAAAA] [-] EMBL AI978286 [ TTGATGTTGCTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTACAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAA ] [+] EMBL AI978285 [ TGCTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTACAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGNNGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATNNTATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCT ] [+] EMBL AI978290 [ TGTAATCTGATGATGATAATNTTNNNCATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13578#0 GAGACGTGGACATGAATCAAATCAAATCAAATCCCCAAATCAAAGTTAACCAAAATTCCG 60 consensus_13578#1 ------------------------------------------------------------ consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 TGGCAGAGGTCTCCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAGCCGCATCCC 120 consensus_13578#1 ------------------------------------------------------------ consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 CTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGA 180 consensus_13578#1 ------------------------------------------------------------ consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 TCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGA 240 consensus_13578#1 ------------------------------------------------------------ consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 AAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTT 300 consensus_13578#1 ------------------------------------------------------------ consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 TAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTACTACCGGATGAAGTTTG 360 consensus_13578#1 -----------------------------------------------------------G 1 consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 GCCCTATTCAGTTTGAGCATGCAACTGCTCGTATGACAGAGATATTTAGAGGACTTGGGA 420 consensus_13578#1 GCCCTATTCAGTTTGAGCATGCAACTGCTCGTATGACAGAGATATTTAGAGGTCTTGGGA 61 consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 TGGAATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGCTCATAACTC 480 consensus_13578#1 TGGAATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGGTCATAACTC 121 consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 TTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTT 540 consensus_13578#1 TTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTT 181 consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 ACTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCTGCAAGAAAGG 600 consensus_13578#1 CCTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCCGCAAGAAAGG 241 consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 TGGGCATAGAAGGAGCAGAAGAACTTCTTCAAGATTCTAACAAAGGAGTCGATGAGGTCA 660 consensus_13578#1 TGGGCATAGAAGGAGCCGAAGAACTTCTTCTAGATTCTAACAAAGGAGTCGATGAGGTCA 301 consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 AGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATG 720 consensus_13578#1 AGGAAGAACTCAACAAATATTCCTCTGGAATTTATGGGGTTCCTCACTTTGTGATAAAAG 361 consensus_13578#2 ------------------------------------------------------------ consensus_13578#0 GGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAAATGCATTCACAAGGGCTTTTGATGTTG 780 consensus_13578#1 GGAAATTTCAGGTCACCGGCGGCCAGCCTCCAAATGCATTCACAAGGGCTTTTGATGTTG 421 consensus_13578#2 ------------------------------CATTNGAATTCGGCACNAGTTTTGATGTTG 30 ** * **** * *********** consensus_13578#0 CTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGC 840 consensus_13578#1 CTGCAAAAGATGGGGCTCCATGATTGTGCGCGTGGGAAACCCTTATAGGTTACTTAAAGC 481 consensus_13578#2 CTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTACAGGTTACTTAAAGC 90 ****************** *********** ********* **** ************** consensus_13578#0 ATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGT 900 consensus_13578#1 ATGTGCAAAATAGAATAAAAGTTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGT 541 consensus_13578#2 ATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGT 150 ********************* ************************************** consensus_13578#0 TGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTT 960 consensus_13578#1 TGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTCCATTTTT 601 consensus_13578#2 TGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTT 210 **************************************************** ******* consensus_13578#0 AACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGT 1020 consensus_13578#1 AACAGCTGTATATAGCCAGGAAAAATTGAGATCGCTGTGAAGAAAAAAACAAACAAAAAG 661 consensus_13578#2 AACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGT 270 ****************** ************ ************** * * ** consensus_13578#0 GTATGCAAAAAACGGCTTTTTTTTTTTGGCTCCTGTGAAAAAAAAAAAAAAAAAAAA 1077 consensus_13578#1 GGA------------------------------------------------------ 664 consensus_13578#2 GTATGCAAAAAAAAAAAAAAAAA---------------------------------- 293 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||