cluster # 13598

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Oryza sativa
cluster # 13598 cluster # 13598 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13598#0 length = 1237 sequences # 10
consensus_13598#1 length = 785 sequences # 1

consensus_13598#2 length = 477 sequences # 1
consensus_13598#3 length = 277 sequences # 1

consensusID : consensus_13598#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1237
fasta sequence

                              [GAAAAAAAAAAACNNAGANCCCCCACAACTTCCGAATCCGATCGGCGGTCGCGGCGGCGGCGGCGGCGTCGGCGACGGCGACGGCGGGGAGCTTCTTCCCGATCCCCTCCTGATCGCCCGCAGGATCGATCGAGCTCTCCCCCCCTCTCACTCACCTCGGGGGGCGCGGCGGTGGGGGGCTAGGGATTTGAGCCGGATCGCGGCGAGC-TTGAAGGGGCGCGGACTGAGGCGGCGAGAGGAGCGGGTTTCCGGTTCGGGGGAAGGAGGGGAGGAGTAGTAGGAGGAGGAGGAGGAGATGGTGCTGGTGCTCGCGCTCGGGGATCTGCACGTGCCGCACCGGGCGGCCGACCTGCCGGCCAAGTTCAAGTCCATGC-TCGT-CCCGGGCAAGA-TCCAGCACATCATCTGC-ACGGGGAACCTC-TGCATCAAGGAAGTTCATGACTACCTGAAAAGCCTTTGTCCTGATCTCCATATAACCAGAGGTGAATATGATGAGGATGCTCGTTACCCAGAGAC-T-AAGACACTTACTATTGGT-CAGTTCAAGCTAGGGCTGTGCCAT-GGTCATCAGGTTGTTCCATGGGGCGA-TTTGGACTCCCTGGCGATGCTCCAACGGCAGCTGGACGTGGACATCCTCGTCACAGGGCACACCCACCAGTTCAAGGCGTACAAGCACGAGGGGGGAGTGGTCATCAACCCCGGCTCCGCCACGGGCGCCTACAG-CAGCATCACCTACGACGTG-AACCCGAGCTTCGTGCTCATGGACATCGAC-GGCCTCCGCGTGGTCGTCTACGTGTACGAGCTGATCGACGGCGAGGTCAAGGTCGACAAGATCGACTTCAAGAAGACGGCGACGATGCACGCCTGACC-AAAAAACACATCAGAAAACCCTTCCCCGTCCTGCCCAGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTGCTTGATTCAGAGATCATCCCATTTTCTCAAGCTTCCTTTTCTTCCTCGCTCTCGTCCTTGTGCAAAAGCTTGAGCC-GTGTATTCAGATTAGTTAATAATAAAAGATCGTCAAGAGTTGTCATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATCTAGTGAATCAAGATCATCAGAGTGATTAAGCTGAAAAAAAAATGCATTATGTAATCCGTGTGTTTGACAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTGCCGTTACGTACCGTAT]

[+] EMBL AU082252             [GAAAAAAAAAAACNNAGANCCCCCACAACTTCCGAATCCGATCGGCGGTCGCGGCGGCGGCGGCGGCGTCGGCGACGGCGACGGCGGGGAGCTTCTTCCCGATCCCCNCCTGATCGCCCGCAGGATCGATCGAGCTCNCCCCCCCTCTCACNCACNTCGGGGGGCGCGGCGGTNGGGGGCTAGGGATTTGAGCCGGATCGCGGCGAGC TTGAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU082274             [                     CCCACAACTTCCGAATCCGATCGGCGGTCGCGGCGGCGGCGGCGGCGTCGGCGACGGCGACGGCGGGGAGCTTCTTCCCGATCCCCTCCTGATCGCCCGCAGGATCGATCGAGCTCTCCCCCCCTCTCACTCACCTCGGGGGGCGCGGCGGTGGGGGGCTAGGGATTTNAGCCGGATCGCGGCGAGCTTTNAAGGGGCGCGGACTGAGGCGGCGAGAGGAGCGGGTTTCCGGTTCGGGGGAAGGAGGGGAGGAGTAGTAGGAGGAGGAGGAGGAGATGGTGCTGGTGCTCGCGCTCGGGGATCTNCACGTGCCGCANCGGGCGGCCGACCTNCCGGCCAAGTTCAAGTCCATGCTTCGTNCCCGGGCAAAATTCCAGCACATCATCTNCAACGGGGAACCTCTTGNATCAAGGAAGTTCATGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK060027             [                          AACTTCCGAATCCGATCGGCGGTCGCGGCGGCGGCGGCGGCGTCGGCGACGGCGACGGCGGGGAGCTTCTTCCCGATCCCCTCCTGATCGCCCGCAGGATCGATCGAGCTCTCCCCCCCTCTCACTCACCTCGGGGGGCGCGGCGGTGGGGGGCTAGGGATTTGAGCCGGATCGCGGCGAGC TTGAAGGGGCGCGGACTGAGGCGGCGAGAGGAGCGGGTTTCCGGTTCGGGGGAAGGAGGGGAGGAGTAGTAGGAGGAGGAGGAGGAGATGGTGCTGGTGCTCGCGCTCGGGGATCTGCACGTGCCGCACCGGGCGGCCGACCTGCCGGCCAAGTTCAAGTCCATGC TCGT CCCGGGCAAGA TCCAGCACATCATCTGC ACGGGGAACCTC TGCATCAAGGAAGTTCATGACTACCTGAAAAGCCTTTGTCCTGATCTCCATATAACCAGAGGTGAATATGATGAGGATGCTCGTTACCCAGAGAC T AAGACACTTACTATTGGT CAGTTCAAGCTAGGGCTGTGCCAT GGTCATCAGGTTGTTCCATGGGGCGA TTTGGACTCCCTGGCGATGCTCCAACGGCAGCTGGACGTGGACATCCTCGTCACAGGGCACACCCACCAGTTCAAGGCGTACAAGCACGAGGGGGGAGTGGTCATCAACCCCGGCTCCGCCACGGGCGCCTACAG CAGCATCACCTACGACGTG AACCCGAGCTTCGTGCTCATGGACATCGAC GGCCTCCGCGTGGTCGTCTACGTGTACGAGCTGATCGACGGCGAGGTCAAGGTCGACAAGATCGACTTCAAGAAGACGGCGACGATGCACGCCTGACC AAAAAACACATCAGAAAACCCTTCCCCGTCCTGCCCAGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTGCTTGATTCAGAGATCATCCCATTTTCTCAAGCTTCCTTTTCTTCCTCGCTCTCGTCCTTGTGCAAAAGCTTGAGCC GTGTATTCAGATTAGTTAATAATAAAAGATCGTCAAGAG                                                                                                                                                                                       ]
[+] EMBL AK071757             [                                                                                                                                 TCGAGCTCTCCCCCCCTCTCACTCACCTCGGGGGGCGCGGCGGTGGGGGGCTAGGGATTTGAGCCGGATCGCGGCGAGC TTGAAGGGGCGCGGACTGAGGCGGCGAGAGGAGCGGGTTTCCGGTTCGGGGGAAGGAGGGGAGGAGTAGTAGGAGGAGGAGGAGGAGATGGTGCTGGTGCTCGCGCTCGGGGATCTGCACGTGCCGCACCGGGCGGCCGACCTGCCGGCCAAGTTCAAGTCCATGC TCGT CCCGGGCAAGA TCCAGCACATCATCTGC ACGGGGAACCTC TGCATCAAGGAAGTTCATGACTACCTGAAAAGCCTTTGTCCTGATCTCCATATAACCAGAGGTGAATATGATGAGGATGCTCGTTACCCAGAGAC T AAGACACTTACTATTGGT CAGTTCAAGCTAGGGCTGTGCCAT GGTCATCAGGTTGTTCCATGGGGCGA TTTGGACTCCCTGGCGATGCTCCAACGGCAGCTGGACGTGGACATCCTCGTCACAGGGCACACCCACCAGTTCAAGGCGTACAAGCACGAGGGGGGAGTGGTCATCAACCCCGGCTCCGCCACGGGCGCCTACAG CAGCATCACCTACGACGTG AACCCGAGCTTCGTGCTCATGGACATCGAC GGCCTCCGCGTGGTCGTCTACGTGTACGAGCTGATCGACGGCGAGGTCAAGGTCGACAAGATCGACTTCAAGAAGACGGCGACGATGCACGCCTGACC AAAAAACACATCAGAAAACCCTTCCCCGTCCTGCCCAGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTGCTTGATTCAGAGATCATCCCATTTTCTCAAGCTTCCTTTTCTTCCTCGCTCTCGTCCTTGTGCAAAAGCTTGAGCC GTGTATTCAGATTAGTTAATAATAAAAGATCGTCAAGAG                                                                                                                                                                                       ]
[+] EMBL CA998819             [                                                                                                                                                                                                                                                                                                                          CTCGGGGATCTGCACGTGCCGCACCGGGCGGCCGACCTGCCGGCCAAGTTCAAGTCCATGC TCGT CCCGGGCAAGA TCCAGCACATCATCTGC ACGGGGAACCTC TGCATCAAGGAAGTTCATGACTACCTGAAAAGCCTTTGTCCTGATCTCCATATAACCAGAGGTGAATATGATGAGGATGCTCGTTACCCAGAAAC T AAGACACTTACTATTGGT CAGTTCAAGCTAGGGCTGTGCCAT GGTCATCAGGTTGTTCCATGGGGCGA TTTGGACTCCCTGGCGATGCTCCAACGGCAGCTGGACGTGGACATCCTCGTCACAGGGCACACCCACCAGTTCAAGGCGTACAAGCACGAGGGGGGAGTGGTCATCAACCCCGGCTCCGCCACGGGCGCCTACAG CAGCATCACCTACGACGTG AACCCGAGCTTCGTGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSS1814A             [                                                                                                                                                                                                                                                                                                                                                                                                                                              AAGGAAGTTCATGACTACCTGAAAAGCCTTTGTCCTGATCTCCATATAACCAGAGGTGAATATGATGAGGATGCTCGTTACCCAGAGAC T AAGACACTTACTATTGGT CAGTTCAAGCTAGGGCTGTGCCAT GGTCATCAGGTTGTTCCATGGGGCGA TTTGGACTCCCTGGCGATGCTCCAACGGCAGCTGGACGTGGACATCCTCGTCACAGGGCACACCCACCAGTTCAAGGCGTACAAGCACGAGGGGGGAGTNGTCATCAACCCCGGCTCCGCCACGGGCGCCTACAG CAGCATCACCTACGACGTG AACCCGAGCTTCGTGCTCATGGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU082275             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTCGTTACCCAGAGACTT AAGACACTTACTATTGGT CAGTTCAAGCTAGGNCTGTGCCAT GGTCATCAGGTTGTTCCATGGGGCGA TTTGGACTCCCTGGCGATGCTCCAACGGCAGNTGGACGTGGACATCCTCGTCACAGGGCACACCCACCAGTTCAAGGCGTACAAGCACGAGGGGGGAGTGGTCATCAACCCC GTTCCGCCACGGGCGCNTACAGCCAGCATCACCTACGACGTGAAACCCGAGCTTCGTGCTCATGGACATCGACGGGCCTCCGCGTGGTCGTNTACGTGTACGAGCTGATCGANGGCGAGGTCAAGGTCGACAAGATCGACTTCAAGAAGACGGCGACGATGCACGCCTGACCAAAAAAACACATCAGAAAACCCTTCCCCGTCCTGCCCAGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTGCTTGATTCAGAGATCATCCCATTTTCTCAAGCTTCCTTTTCTTCCTCGCTCTCGTCCTTGTGCAAAAGCTTGAGCC GTGTATTCAGATTAGTTAATAATAAAAGATCGTCAAGAGTTGTCATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATCTAGTGAATCAAGATCATCAGAGTGATTAAGCTGAAAAAAAAA                                                                                                     ]
[+] EMBL AU030978             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAGAC TNAAGACANTTATTATTGGTCCCTTTCAAGTNAGGGCTGTNCCNTGGGTCATCNGGTTGTTCCATGGGGCGATTTTGGNCTCCCTGGCGATGNTCCAACGGCAGNTGGACNTGNACATCCTCNTCACNGGGCACACCCACCNGTTNAAGGCGTACAAGCACGAGGGGGGCGTGGTCATCAACCCCCGCTCCGCCACGGGCGCCTACAG CNGCATCACCTACGACGTG AACCCGAGCTTCGTGCTCATGGACATCGAC GGCCTCCGCGTGGTCGTCTACGTGTACGAGCTGATCGACGGCGNGGTCAAGGTCGACAAGATCGACTTCAAGAAGACGGCGACGATGCACGCCTGACC AAAAAACACATCNGAAAACCCTTCCCCGTCCTGCCCAGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTGCTTGATTCAGNGATCATCCCATTTTCTCAAGCTTCCTTTTCTTCCTCGCTCTCGTCCTTGTGCAAAAGCTTGAGCC GTGTATTNAGATTNGTTNATAATAAAAGATCGTCAAGNGTTGTNNTGGTAAAAAAAAa                                                                                                                                                                    ]
[+] EMBL AU172484             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCAACCCCGGCTCCGCCACGGGCGCCTACAG CAGCATCACCTACGACGTG AACCCGAGCTTCGTGCTCATGGACATCGAC GGCCTCCGCGTGGTCGTCTACGTGTACGAGCTGATCGACGGCGAGGTCAAGGTCGACAAGATCGACTTCAAGAAGACGGCGACGATGCACGCCTGACC AAAAAACACATCAGAAAACCCTTCCCCGTCCTGCCCAGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTGCTTGATTCAGAGATCATCCCATTTTCTCAAGCTTCCTTTTCTTCCTCGCTCTCGTCCTTGTGCAAAAGCTTGAGCCNGTGTATTCAGATTAGTTAATAATAAAAGATCGTCAAGAGTTGTCATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATCTAGTGAATCAAGATCATCAGAGTGATTAAGCTGAAAAAAA                                                                                                       ]
[+] EMBL CF318170             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCTTCTTGCTTGATTCAGAGATCATCCCATTTTCTCAAGCTTCCTTTTCTTCCTCGCTCTCGTCCTTGTGCAAAAGCTTGAGCC GTGTATTCAGATTAGTTAATAATAAAAGATCGTCAAGAGTTGTCATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATCTAGTGAATCAAGATCATCAGAGTGATTAAGCTGAGGTGACATTGCATTATGTAATCCGTGTGTTTGACAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTGCCGTTACGTACCGTAT]




>consensus_13598#0
GAAAAAAAAAAACNNAGANCCCCCACAACTTCCGAATCCGATCGGCGGTCGCGGCGGCGG
CGGCGGCGTCGGCGACGGCGACGGCGGGGAGCTTCTTCCCGATCCCCTCCTGATCGCCCG
CAGGATCGATCGAGCTCTCCCCCCCTCTCACTCACCTCGGGGGGCGCGGCGGTGGGGGGC
TAGGGATTTGAGCCGGATCGCGGCGAGCTTGAAGGGGCGCGGACTGAGGCGGCGAGAGGA
GCGGGTTTCCGGTTCGGGGGAAGGAGGGGAGGAGTAGTAGGAGGAGGAGGAGGAGATGGT
GCTGGTGCTCGCGCTCGGGGATCTGCACGTGCCGCACCGGGCGGCCGACCTGCCGGCCAA
GTTCAAGTCCATGCTCGTCCCGGGCAAGATCCAGCACATCATCTGCACGGGGAACCTCTG
CATCAAGGAAGTTCATGACTACCTGAAAAGCCTTTGTCCTGATCTCCATATAACCAGAGG
TGAATATGATGAGGATGCTCGTTACCCAGAGACTAAGACACTTACTATTGGTCAGTTCAA
GCTAGGGCTGTGCCATGGTCATCAGGTTGTTCCATGGGGCGATTTGGACTCCCTGGCGAT
GCTCCAACGGCAGCTGGACGTGGACATCCTCGTCACAGGGCACACCCACCAGTTCAAGGC
GTACAAGCACGAGGGGGGAGTGGTCATCAACCCCGGCTCCGCCACGGGCGCCTACAGCAG
CATCACCTACGACGTGAACCCGAGCTTCGTGCTCATGGACATCGACGGCCTCCGCGTGGT
CGTCTACGTGTACGAGCTGATCGACGGCGAGGTCAAGGTCGACAAGATCGACTTCAAGAA
GACGGCGACGATGCACGCCTGACCAAAAAACACATCAGAAAACCCTTCCCCGTCCTGCCC
AGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTGCTTGATTCAGAGATCATCCCA
TTTTCTCAAGCTTCCTTTTCTTCCTCGCTCTCGTCCTTGTGCAAAAGCTTGAGCCGTGTA
TTCAGATTAGTTAATAATAAAAGATCGTCAAGAGTTGTCATGGTAAAAAGAACTGGAGCC
GGTGTATTGAGATCTAGTGAATCAAGATCATCAGAGTGATTAAGCTGAAAAAAAAATGCA
TTATGTAATCCGTGTGTTTGACAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACACTGTCTTGCCGTTACGTACCGTAT

consensusID : consensus_13598#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 785
fasta sequence

                              [AGCACGGGGGCGTGACAGCAGCATCACCTACGACGTGAACCCGAGCTTCGTGCTCATGGACATCGACGGCCTCCGCGTGGTCGTCTACGTGTACGAGCTGATCGACGGCGAGGTCAAGGTCGACAAGATCGACTTCAAGAAGACGGCGACGATGCACGCCTGAGCAAAAAACACATCAGAAAACCCTTCCCCGTCCTGCCCAGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTGCTTGATTCAGAGATCATCCCATTTTCTCAAGCTTGCTTTTCTTCCTCGCTCTCGTGCTTGTGCAAAAGCTGGAGCCGTGTATTCAGATTAGTTAATAATAAAAGATCGTAAAGAGTTGTCATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATAGAGTGAATCAAGATCATCAGAGTGATTAAGCTAGGGTGACATTGCATTATGTAATCCGGGGGGGGGACAGGCTGGGAAGGGGCAACATGGGGGCCTGCACATACATAACTTTGGGGTAGACACAGGAACTGGAGGTTGGGGTGAGAGAAAGAGGTGGGAGGAGACGGAAAAGGCTTGGGGGGGGGGCGCGGGGCCGAAGGGGCTAGGGAGGANTTAATAGCGNCCCGTCATGGGCGTGGGGGACGGGGGGGGACTGTGGAAACCGCTGTGGGGCGGGGTGGATGGGGGGAGGGGAGAGGCGGTTGGGTAGTAGTCGTATGGGGGGAGAGGGGCCGAGAGGCGGGCTGGGGGTGGGGGCAGGGGGGAAGGGGGCGGGCGTGGGTGGAGTGG]

[+] EMBL BE040223             [AGCACGGGGGCGTGACAGCAGCATCACCTACGACGTGAACCCGAGCTTCGTGCTCATGGACATCGACGGCCTCCGCGTGGTCGTCTACGTGTACGAGCTGATCGACGGCGAGGTCAAGGTCGACAAGATCGACTTCAAGAAGACGGCGACGATGCACGCCTGAGCAAAAAACACATCAGAAAACCCTTCCCCGTCCTGCCCAGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTGCTTGATTCAGAGATCATCCCATTTTCTCAAGCTTGCTTTTCTTCCTCGCTCTCGTGCTTGTGCAAAAGCTGGAGCCGTGTATTCAGATTAGTTAATAATAAAAGATCGTAAAGAGTTGTCATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATAGAGTGAATCAAGATCATCAGAGTGATTAAGCTAGGGTGACATTGCATTATGTAATCCGGGGGGGGGACAGGCTGGGAAGGGGCAACATGGGGGCCTGCACATACATAACTTTGGGGTAGACACAGGAACTGGAGGTTGGGGTGAGAGAAAGAGGTGGGAGGAGACGGAAAAGGCTTGGGGGGGGGGCGCGGGGCCGAAGGGGCTAGGGAGGANTTAATAGCGNCCCGTCATGGGCGTGGGGGACGGGGGGGGACTGTGGAAACCGCTGTGGGGCGGGGTGGATGGGGGGAGGGGAGAGGCGGTTGGGTAGTAGTCGTATGGGGGGAGAGGGGCCGAGAGGCGGGCTGGGGGTGGGGGCAGGGGGGAAGGGGGCGGGCGTGGGTGGAGTGG]




>consensus_13598#1
AGCACGGGGGCGTGACAGCAGCATCACCTACGACGTGAACCCGAGCTTCGTGCTCATGGA
CATCGACGGCCTCCGCGTGGTCGTCTACGTGTACGAGCTGATCGACGGCGAGGTCAAGGT
CGACAAGATCGACTTCAAGAAGACGGCGACGATGCACGCCTGAGCAAAAAACACATCAGA
AAACCCTTCCCCGTCCTGCCCAGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTG
CTTGATTCAGAGATCATCCCATTTTCTCAAGCTTGCTTTTCTTCCTCGCTCTCGTGCTTG
TGCAAAAGCTGGAGCCGTGTATTCAGATTAGTTAATAATAAAAGATCGTAAAGAGTTGTC
ATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATAGAGTGAATCAAGATCATCAGAGTGA
TTAAGCTAGGGTGACATTGCATTATGTAATCCGGGGGGGGGACAGGCTGGGAAGGGGCAA
CATGGGGGCCTGCACATACATAACTTTGGGGTAGACACAGGAACTGGAGGTTGGGGTGAG
AGAAAGAGGTGGGAGGAGACGGAAAAGGCTTGGGGGGGGGGCGCGGGGCCGAAGGGGCTA
GGGAGGANTTAATAGCGNCCCGTCATGGGCGTGGGGGACGGGGGGGGACTGTGGAAACCG
CTGTGGGGCGGGGTGGATGGGGGGAGGGGAGAGGCGGTTGGGTAGTAGTCGTATGGGGGG
AGAGGGGCCGAGAGGCGGGCTGGGGGTGGGGGCAGGGGGGAAGGGGGCGGGCGTGGGTGG
AGTGG

consensusID : consensus_13598#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [TGGACTGAAGGAGTAGAAAGACTGGAGCACGAGGACACTGTCATGGACTGAAAGAGTTGTCATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATCTAGTGAATCAAGATCATCAGAGTGATTAAGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTGCCCTTAACTTAAAAAAGGGCAAATTCGGGGCCGTAAAATTAAATTCCCCCTAAAGGGAGGGGTTTAAAAATTAAGGGGCCGGGGTTTAAAAACGTCGGAATGGGAAAAACCCGGGGGTACCCAAATTAAATCGCTTTGAAAAAAATCCCCTTTTCCCAAATGGGGTAAAAAAAAAAAAGGCCCCCACCAATCCCCTTTCCAAAAAGGGGCCCACCTTAAACTAACGGAATTTAAAGGTTAACCCCTAAAA]

[+] EMBL CF313714             [TGGACTGAAGGAGTAGAAAGACTGGAGCACGAGGACACTGTCATGGACTGAAAGAGTTGTCATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATCTAGTGAATCAAGATCATCAGAGTGATTAAGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTGCCCTTAACTTAAAAAAGGGCAAATTCGGGGCCGTAAAATTAAATTCCCCCTAAAGGGAGGGGTTTAAAAATTAAGGGGCCGGGGTTTAAAAACGTCGGAATGGGAAAAACCCGGGGGTACCCAAATTAAATCGCTTTGAAAAAAATCCCCTTTTCCCAAATGGGGTAAAAAAAAAAAAGGCCCCCACCAATCCCCTTTCCAAAAAGGGGCCCACCTTAAACTAACGGAATTTAAAGGTTAACCCCTAAAA]




>consensus_13598#2
TGGACTGAAGGAGTAGAAAGACTGGAGCACGAGGACACTGTCATGGACTGAAAGAGTTGT
CATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATCTAGTGAATCAAGATCATCAGAGTG
ATTAAGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTGCCCTTAACTTAAA
AAAGGGCAAATTCGGGGCCGTAAAATTAAATTCCCCCTAAAGGGAGGGGTTTAAAAATTA
AGGGGCCGGGGTTTAAAAACGTCGGAATGGGAAAAACCCGGGGGTACCCAAATTAAATCG
CTTTGAAAAAAATCCCCTTTTCCCAAATGGGGTAAAAAAAAAAAAGGCCCCCACCAATCC
CCTTTCCAAAAAGGGGCCCACCTTAAACTAACGGAATTTAAAGGTTAACCCCTAAAA

consensusID : consensus_13598#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [CCCCTTTCCCTTTTTGGTTTGATTCAGAGATCATCCCATTTTTTCAAGTTTCTTTTTTTTCCTGGCTTTGGCCCTTGGGCAAAAGCTTGACCGGTGTATTCAGATTAGTTAATAATAAAAGTTCGTCAAGAGTTGTCATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATTTAGTGAATCAAGATCATAAGAGTGATTAAGTTAAGGTGCCATTGCATTATGTAATCGGTGTGTTAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF318169             [CCCCTTTCCCTTTTTGGTTTGATTCAGAGATCATCCCATTTTTTCAAGTTTCTTTTTTTTCCTGGCTTTGGCCCTTGGGCAAAAGCTTGACCGGTGTATTCAGATTAGTTAATAATAAAAGTTCGTCAAGAGTTGTCATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATTTAGTGAATCAAGATCATAAGAGTGATTAAGTTAAGGTGCCATTGCATTATGTAATCGGTGTGTTAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13598#3
CCCCTTTCCCTTTTTGGTTTGATTCAGAGATCATCCCATTTTTTCAAGTTTCTTTTTTTT
CCTGGCTTTGGCCCTTGGGCAAAAGCTTGACCGGTGTATTCAGATTAGTTAATAATAAAA
GTTCGTCAAGAGTTGTCATGGTAAAAAGAACTGGAGCCGGTGTATTGAGATTTAGTGAAT
CAAGATCATAAGAGTGATTAAGTTAAGGTGCCATTGCATTATGTAATCGGTGTGTTAAAA
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13598#1      ------------------------------------------------------------
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      GAAAAAAAAAAACNNAGANCCCCCACAACTTCCGAATCCGATCGGCGGTCGCGGCGGCGG 60
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ------------------------------------------------------------
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      CGGCGGCGTCGGCGACGGCGACGGCGGGGAGCTTCTTCCCGATCCCCTCCTGATCGCCCG 120
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ------------------------------------------------------------
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      CAGGATCGATCGAGCTCTCCCCCCCTCTCACTCACCTCGGGGGGCGCGGCGGTGGGGGGC 180
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ------------------------------------------------------------
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      TAGGGATTTGAGCCGGATCGCGGCGAGCTTGAAGGGGCGCGGACTGAGGCGGCGAGAGGA 240
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ------------------------------------------------------------
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      GCGGGTTTCCGGTTCGGGGGAAGGAGGGGAGGAGTAGTAGGAGGAGGAGGAGGAGATGGT 300
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ------------------------------------------------------------
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      GCTGGTGCTCGCGCTCGGGGATCTGCACGTGCCGCACCGGGCGGCCGACCTGCCGGCCAA 360
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ------------------------------------------------------------
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      GTTCAAGTCCATGCTCGTCCCGGGCAAGATCCAGCACATCATCTGCACGGGGAACCTCTG 420
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ------------------------------------------------------------
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      CATCAAGGAAGTTCATGACTACCTGAAAAGCCTTTGTCCTGATCTCCATATAACCAGAGG 480
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ------------------------------------------------------------
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      TGAATATGATGAGGATGCTCGTTACCCAGAGACTAAGACACTTACTATTGGTCAGTTCAA 540
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ------------------------------------------------------------
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      GCTAGGGCTGTGCCATGGTCATCAGGTTGTTCCATGGGGCGATTTGGACTCCCTGGCGAT 600
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ------------------------------------------------------------
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      GCTCCAACGGCAGCTGGACGTGGACATCCTCGTCACAGGGCACACCCACCAGTTCAAGGC 660
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ----------------------------------------AGCACGGGGGCGTGACAGCA 20
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      GTACAAGCACGAGGGGGGAGTGGTCATCAACCCCGGCTCCGCCACGGGCGCCT-ACAGCA 719
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      GCATCACCTACGACGTGAACCCGAGCTTCGTGCTCATGGACATCGACGGCCTCCGCGTGG 80
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      GCATCACCTACGACGTGAACCCGAGCTTCGTGCTCATGGACATCGACGGCCTCCGCGTGG 779
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      TCGTCTACGTGTACGAGCTGATCGACGGCGAGGTCAAGGTCGACAAGATCGACTTCAAGA 140
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      TCGTCTACGTGTACGAGCTGATCGACGGCGAGGTCAAGGTCGACAAGATCGACTTCAAGA 839
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      AGACGGCGACGATGCACGCCTGAGCAAAAAACACATCAGAAAACCCTTCCCCGTCCTGCC 200
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      AGACGGCGACGATGCACGCCTGACCAAAAAACACATCAGAAAACCCTTCCCCGTCCTGCC 899
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      CAGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTGCTTGATTCAGAGATCATCCC 260
consensus_13598#3      -----------------------CCCCTTTCCCTTTTTGGTTTGATTCAGAGATCATCCC 37
consensus_13598#0      CAGCCCTGCCCTTGTTTTTAGTTACCCTTTACCCTTCTTGCTTGATTCAGAGATCATCCC 959
consensus_13598#2      ------------------------------------------------------------
                                                                                   

consensus_13598#1      ATTTTCTCAAGCTTGCTTTTCTTCCTCGCTCTCGTGCTTGTGCAAAAGCTGGAGCCGTGT 320
consensus_13598#3      ATTTTTTCAAGTTTCTTTTTTTTCCTGGCTTTGGCCCTTGGGCAAAAGCTTGACCGGTGT 97
consensus_13598#0      ATTTTCTCAAGCTTCCTTTTCTTCCTCGCTCTCGTCCTTGTGCAAAAGCTTGAGCCGTGT 1019
consensus_13598#2      --------------------------------------TGGACTGAAGGAGTAGAAAGAC 22
                                                             **  *  ***    *       

consensus_13598#1      ATTCAGATTAGTTAATAATAAAAGATCGTAAAGAGTTGTCATGGTAAAAAGAACTGGAGC 380
consensus_13598#3      ATTCAGATTAGTTAATAATAAAAGTTCGTCAAGAGTTGTCATGGTAAAAAGAACTGGAGC 157
consensus_13598#0      ATTCAGATTAGTTAATAATAAAAGATCGTCAAGAGTTGTCATGGTAAAAAGAACTGGAGC 1079
consensus_13598#2      TGGAGCACGAGGACACTGTCATGGACTG-AAAGAGTTGTCATGGTAAAAAGAACTGGAGC 81
                             *  **   *   * *  *   *  ******************************

consensus_13598#1      CGGTGTATTGAGATAGAGTGAATCAAGATCATCAGAGTGATTAAGCTAGGGTGACATTGC 440
consensus_13598#3      CGGTGTATTGAGATTTAGTGAATCAAGATCATAAGAGTGATTAAGTTAAGGTGCCATTGC 217
consensus_13598#0      CGGTGTATTGAGATCTAGTGAATCAAGATCATCAGAGTGATTAAGCTGAAAAAAAAATGC 1139
consensus_13598#2      CGGTGTATTGAGATCTAGTGAATCAAGATCATCAGAGTGATTAAGCTGAAAAAAAAAAAA 141
                       **************  **************** ************ *        *    

consensus_13598#1      ATTATGTAATCCGGGGGGGGGACAGGCTGGGAAGGGGCAACATGGGGGCCTGCACATACA 500
consensus_13598#3      ATTATGTAATCGGTGTGTTAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 277
consensus_13598#0      ATTATGTAATCCGTGTGTTTGACAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1199
consensus_13598#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 201
                       *  *   **            * *       **     ** *           * * * *

consensus_13598#1      TAACTTTGGGGTAGACACAGGAACTGGAGGTTGGGGTGAGAGAAAGAGGTGGGAGGAGAC 560
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      AAA-----AAAAAAAAACACTGTCTTGCCGTTACGTACCGTAT----------------- 1237
consensus_13598#2      AAAAAAAAAAAAAAAACCCTTGTTTGCCCTTAACTTAAAAAAGGGCAAATTCGGGGCCGT 261
                                                                                   

consensus_13598#1      GGAAAAGGCTTGGGGGGGGGGCGCGGGGCCGAAGGGGCTAGGGAGGANTTAATAGCGNCC 620
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      ------------------------------------------------------------
consensus_13598#2      AAAATTAAATTCCCCCTAAAGGGAGGGGTTTAAAAATTAAGGGGCCGGGGTTTAAAAACG 321
                                                                                   

consensus_13598#1      CGTCATGGGCGTGGGGGACGGGGGGGGACTGTGGAAACCGCTGTGGGGCGGGGTGGATGG 680
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      ------------------------------------------------------------
consensus_13598#2      TCGGAATGG-GAAAAACCCGGGGGTACCCAAATTAAATCGCTTTGAAAAAAATCCCCTTT 380
                                                                                   

consensus_13598#1      GGGGAGGGGAGAGGCGGTTGGGTAGTAGTCGTATGGGGGGAGAGGGGCCGAGAGGCGGGC 740
consensus_13598#3      ------------------------------------------------------------
consensus_13598#0      ------------------------------------------------------------
consensus_13598#2      TCCCAAATGG--GGTAAAAAAAAAAAAGGCCCCCACCAATCCCCTTTCCAAAAAGGGGCC 438
                                                                                   

consensus_13598#1      TGGGGGTGGGGGCAGGGGGGAAGGGGGCGGGCGTGGGTGGAGTGG 785
consensus_13598#3      ---------------------------------------------
consensus_13598#0      ---------------------------------------------
consensus_13598#2      CACCTTAAACTAACGGAATTTAAAGGTTAACCCCTAAAA------ 477