cluster # 13614

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13614 cluster # 13614 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13614#0 length = 1738 sequences # 10

consensus_13614#1 length = 831 sequences # 2
consensus_13614#2 length = 270 sequences # 1

consensusID : consensus_13614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1738
fasta sequence

                              [CTAGAGTCTTTCTTGCTTCTCCTGAGTCCTGACTTCTTGATCCACCGATTGTTCTTCGATTTCTTGCTTCTTGATTCGTCGCCGCTGCTGCTGCTGGAGGCAGAAAGGGAGCACAAGATCGAGCAATCCAAGCTGCAATTAGAGGAGGAGGAAGAGGAAGAGGAGGAGGATGCTGAGAAGGGCGGGGAAAGGGGAGGTTGCAGATGGGTTCTACCAGATTCGCTCGGATTGCACCCACAAGGTCCCCGAGACCAAGTTCAAGATCAAGGTTGGGAAAACGTTGAGCGTTCGGAAATGGCATGCTGCGTTTACGCGTGAAGGCCGTTTGGATATTGCTTCGGTTCTGAACCGGATACAGAAAGGGGGTGTCCATCCTACAATCAGGGGAGAGGTCTGGGAG-TTTTTACTTGGCTGTTTTGATCCTGGGAGCACTTTTGATGAGCGCGAGCAGATTAGGGAGAAAAGAAGAATACAATATGCCATATGGAAGCAAGAATGCAAAGATATGGACTCCCATGTTGGTAGCGGTAAAATTATCACAGCCCCAATTATAACTGAGGATGGAAAACCTATTAAGGATCCTTTGGTTTTGCTCGAAGCTACTTCAGACCAGCACACAA-TGCAAGGTAGTTCATCCAGCAGCAGGAACGAAAATGAGGTGGACAAGTCCGAAAATTGTGTGGTGGATAAACAAATTATCGAATGGAAGCTTTTGCTACATCAAATTGGCCTTGATGTGCTGCGCACTGATCGATCCATGGTGTTTTATGAGAACAAAGAAAATCTTTCGAAGTTATGGGATATTCTTGCTGTATATGCTTGGATCGACAAAGAAATTGGCTATTGTCAAGGAATGAGTGATTTATGCTCACCGATGATAGTGCTGCTCAACGACGAAGCAGATGCATTTTGGTGCTTTGAGAGATTAATGCGTAGACTGATGCACACAGCAATCTGTTGGGGTGGAGAACCAGCTTCAGCACCTTGCGTCTATCATTCAAGTGCTTGACCCAAAATTACATGACCACCTAGAAACACTTGGTG-GGGGTGATTATCTCTTTGCATTCCGCATGTTCATGGTATTGTTTCGGCGTGAATTATCATTTGGGGACTCACTATACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGACATCTTCTCCACATATGAACATATTGATGCTGCAACTGGTGTAACTCCAGGACATAGGCAAAAAGTAAAATCAATCCGCCAATTTGGCAAGTACGAGAGAGACAATATGAAGAATGGGGCTACTAGTGACAACGATG-GTCCTGTTCCGATTTCTGTTTTCCTGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGAAGCTCGAGGGATTGATGATGTTATTAGGATTTTG-AATGATGTTAATGGGAATTTGGATGCGAAAAAGGCTTGCGCTGTTGCATT-G-AAACTTCA-CAGGAAATA-CCTTA-A-AA-AGATCCA-GGGAAAGAAGCCATA--ACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTACTCCTGCTTTTCTCCTAA-TTTGTGAGAAAAATGTACAAAGTTCGTTAATTTGTGGCTGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGTAACATTATTTATTGATGAATCAATGGAGGCCAAAGGGAAACAACTCATGGTTG-CTTTTAAAAAAATTCAAAAAAAAA]

[+] EMBL AK065976             [CTAGAGTCTTTCTTGCTTCTCCTGAGTCCTGACTTCTTGATCCACCGATTGTTCTTCGATTTCTTGCTTCTTGATTCGTCGCCGCTGCTGCTGCTGGAGGCAGAAAGGGAGCACAAGATCGAGCAATCCAAGCTGCAATTAGAGGAGGAGGAAGAGGAAGAGGAGGAGGATGCTGAGAAGGGCGGGGAAAGGGGAGGTTGCAGATGGGTTCTACCAGATTCGCTCGGATTGCACCCACAAGGTCCCCGAGACCAAGTTCAAGATCAAGGTTGGGAAAACGTTGAGCGTTCGGAAATGGCATGCTGCGTTTACGCGTGAAGGCCGTTTGGATATTGCTTCGGTTCTGAACCGGATACAGAAAGGGGGTGTCCATCCTACAATCAGGGGAGAGGTCTGGGAGTTTTTTACTTGGCTGTTTTGATCCTGGGAGCACTTTTGATGAGCGCGAGCAGATTAGGGAGAAAAGAAGAATACAATATGCCATATGGAAGCAAGAATGCAAAGATATGGACTCCCATGTTGGTAGCGGTGAAATTATCACAGCCCCAATTATAACTGAGGATGGAAAACCTATTAAGGATCCTTTGGTTTTGCTCGAAGCTACTTCAGACCAGCACACAA TGCAAGGTAGTTCATCCAGCAGCAGGAACGAAAATGAGGTGGACAAGTCCGAAAATTGTGTGGTGGATAAACAAATTATCGAATGGAAGCTTTTGCTACATCAAATTGGCCTTGATGTGCTGCGCACTGATCGATCCATGGTGTTTTATGAGAACAAAGAAAATCTTTCGAAGTTATGGGATATTCTTGCTGTATATGCTTGGATCGACAAAGAAATTGGCTATTGTCAAGGAATGAGTGATTTATGCTCACCGATGATAGTGCTGCTCAACGACGAAGCAGATGCATTTTGGTGCTTTGAGAGATTAATGCGTAGACTGATGCACACAGCAATCTGTTGGGGTGGAGAACCAGCTTCAGCACCTTGCGTCTATCATTCAAGTGCTTGACCCAAAATTACATGACCACCTAGAAACACTTGGTG GGGGTGATTATCTCTTTGCATTCCGCATGTTCATGGTATTGTTTCGGCGTGAATTATCATTTGGGGACTCACTATACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGACATCTTCTCCACATATGAACATATTGATGCTGCAACTGGTGTAACTCCAGGACATAGGCAAAAAGTAAAATCAATTCGCCAATTTGGCAAGTACGAGAGAGACAATATGAAGAATGGGGCTACTAGTGACAACGATG GTCCTGTTCCGATTTCTGTTTTCCTGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGAAGCTCGAGGGATTGATGATGTTATTAGGATTTTG AATGATGTTAATGGGAATTTGGATGCGAAAAAGGCTTGCGCTGTTGCATT G AAACTTCA CAGGAAATA CCTTA A AA AGATCCA GGGAAAGAAGCCATA  ACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTACTCCTGCTTTTCTCCTAA TTTGTGAGAAAAATGTACAAAGTTCGTTAATTTGTGGCTGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGTAACATTATTTATTGATGAATCAATGGAGGCCAAAGG                                          ]
[+] EMBL CB672369             [                                                                                                                          GCAATCCTATCTGCAATTAGAGGAGGAGGAAGAGGAAGAGGAGGAGGATGCTGAGAAGGGCGGGGAAAGGGGAGGTTGCAGATGGGTTCTACCAGATTCGCTCGGATTGCACCCACAAGGTCCCCGAGACCAAGTTCAAGATCAAGGTTGGGAAAACGTTGAGCGTTCGGAAATGGCATGCTGCGTTTACGCGTGAAGGCCGTTTGGATATTGCTTCGGTTCTGAACCGGATACAGAAAGGGGGTGTCCATCCTACAATCAGGGGAGAGGTCTGGGAG TTTTTACTTGGCTGTTTTGATCCTGGGAGCACTTTTGATGAGCGCGAGCAGATTAGGGAGAAAAGAAGAATACAATATGCCATATGGAAGCAAGAATGCAAAGATATGGACTCCCATGTTGGTAGCGGTAAAATTATCACAGCCCCAATTATAACTGAGGATGGAAAACCTATTAAGGATCCTTTGGTTTTGCTCGAAGCTACTTCAGACCAGCACACAA TGCAAGGTAGTTCATCCAGCAGCAGGAACGAAAATGAGGTGGACAAGTCCGAAAATTGTGTGGTGGATAAACAAATTATCGAATGGAAGCTTTTGCTACATCAAATTGGCCTTGATGTGCTGCGCACTGATCGATCCATGGTGTTTTATGAGAACAAAGAAAATCTTTCGAAGTTATGGGATATTCTTGCTGTATATGCTTGGATCGACAAAGAAATTGGCTATTGTCAAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSR24321A            [                                                                                                                                                                                                                                                                                                                                                                              ccgCCATCCTACAATCAGGGGAGAGGTCTGGGAG TTTTTACTTGGCTGTTTTGATCCTGGGAGCACTTTTGATGAGCGCGA CAGATTAGGGAGAAAAGAAGAATACAATATGCCATATGGAAGCAAGAATGCAAAGATATGGACTCCCATGTTGGTAGCGGTAAAATTATCACAGCCCCAATTATAACTGAGGATGGAAAACCTATTAAGGATCCTTTGGTTTTGCTCGAAGCTACTTCAGACCAGCACACAATTGCAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSR25231A            [                                                                                                                                                                                                                                                                                                                                                                                          AATCAGGGGAGAGGTCTGGGAG TTTTTACTTGGCTGTTTTGATCCTGGGAGCACTTTTGATGAGCGCGA CAGATTAGGGAGAAAAGAAGAATACAATATGCCATATGGAAGCAAGAATGCAAAGATATGGACTCCCATGTTGGTAGCGGTAAAATTATCACAGCCCCAATTATAACTGAGGATGGAAAACCTATTAAGGATCCTTTGGTTTTGCTCGAAGCTACTTCAGACCAGCACACAA TGCAAGGTAGTTCATCCAGCAGCAGGNNCGAAAATGAGGTGGNCAAGTCCGAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU030432             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GACCAGCACACAA TGCAAGGTAGTTCATCCAGCAGCAGGAACGAAAATNAGGTNGACAAGTCCGAAAATTGTGTGGTGGATAAACAAATTATCGAATGGAAGCTTTTGCTACATCAAATTGGCCTTGATGTGCTGCGCACTGATCGATCCATGGTGTTTTATGAGAACAAAGAAAATCTTTCGAAGTTATGGGATATTCTTGCTGTATATGCTTGGATCGACAAAGAAATTGGCTATTGTCAAGGAATGAGTGATTTATGCTCACCGATGATAGTGCTGCTCAACGACG AGCAGATGCATTTTGGGGCTTNGAaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF328448             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTGCGCACTGATCGATCCATGGTGTTTTATGAGAACAAAGAAAATCTTTCGAAGTTATGGGATATTCTTGCTGTATATGCTTGGATCGACAAAGAAATTGGCTATTGTCAAGGAATGAGTGATTTATGCTCACCGATGATAGTGCTGCTCAACGACGAAGCAGATGCATTTTGGTGCTTTGAGAGATTAATGCGTAGACTGATGCACACAGCAATCTGTTGGGGTGGAGAACCAGCTTCAGCACCTTGCGTCTATCATTCAAGTGCCTGACCCAAAATTACATGACCACCTAGAAACACTTGGTGNGGGGTGATTATCTCTTTGCATTCCGCATGTTCATGGTATTGTTTCGGCGTGAATTATCATTTGGGGACTCACTATACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGACATCTTCTCCACATATGAACATATTGATGCTGCAACTGGTGTAACTCCAGGACATAGGCAAAAAGTAAAATCAATCCGCCAATTTGGCAAGTACGAGAGAGACAATATGAAGAATGGGGCTACTAGTGACAACGATG GTCCTGTTCCGATTTCTGTTTTCCTGGTTGCTAGTGTTCTGAAAGAGAACAGTGCG                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CF328449             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATATTGATGCTGCAACTGGTGTAACTCCAGGACATAGGCAAAAAGTAAAATCAATCCGCCAATTTGGCAAGTACGAGAGAGACAATATGAAGAATGGGGCTACTAGTGACAACGATGTGTCCTGTTCCGATTTCTGTTTTCCTGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGAAGCTCGAGGGATTGATGATGTTATTAGGATTTTG AATGATGTTAATGGGAATTTGGATGCGAAAAAGGCTTGCGCTGTTGCATT G AAACTTCA CAGGAAATA CCTTA A AA AGATCCA GGGAAAGAAGCCATA  ACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTACTCCTGCTTTTCTCCTAA TTTGTGAGAAAAATGTACAAAATTCGTTAATTTGTGGCTGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGTAACATTATTTATTGATGAATCAATGGAGGCCAAAGGGAAACAACTCATGGTTG CTTTTAGCTGGATTCAAAAAAAAA]
[+] EMBL BI805881             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGTACGAGAGAGACTATATGAAGAATGGGGCTACTAGTGACAACGATG GTCCTGTTCCGATTTCTGTTTTCCTGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGAAGCTCGAGGGATTGATGATGTTATTAGGATTTTGTAATGATGTTAATGGGAATTTGGATGCGAAAAAGGCTTGCGCTGTTGCATT G AAACTTCA CAGGAAATA CCTTA ATAATAGATCCA GGGAAAGAAGCCATA  ACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTACTCCTGCTTTTCTCCTAACTTTGTGAGAAAAATGTACCAAGTTCGTTAATTTGTGGCTGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGTAACATTATTTATTGATGAATCAATGGAGGCCNAAGGGAAACAACTCATGGTTGCCTTTTAAAAAAAaaa         ]
[+] EMBL BI805651             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           G AATGATGTTAATGGGAATTTGGATGCGAAAAAGGCTTGCGCTGTTGCATT GTAAACTTCACCAGGAAATACCCTTATA AA AGATCCACGGGAAAGAAGCCATANNACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTACTCCTGCTTTTCTCCTAA TTTGTGAGAAAAATGTACCAAGTTCGTTAATTTGTGGCTGGTAAGAATTCTACCACTAAACTATA CCCCCATATAACACCCGGAGAATATTACATGTAACCTTATTTATTGATGAATCNATGGA GCCCAAGGGAAACAACTCATGGTTG CT                      ]
[+] EMBL AU082704             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCATTNG AAACTTCA CAGGAAATA CCTTA A AA AGATCCA GGGAAAGAAGCCATA  ACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTACTCCTGCTTTTCTCCTAA TTTGTGAGAAAAATGTACAAAGTTCGTTAATTTGTGGCTGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGTAACATTATTTATTGATGAATCAATGGAGGCCAAAGGGAAACAACTCATGGTTG CTTTTAAAAAA             ]




>consensus_13614#0
CTAGAGTCTTTCTTGCTTCTCCTGAGTCCTGACTTCTTGATCCACCGATTGTTCTTCGAT
TTCTTGCTTCTTGATTCGTCGCCGCTGCTGCTGCTGGAGGCAGAAAGGGAGCACAAGATC
GAGCAATCCAAGCTGCAATTAGAGGAGGAGGAAGAGGAAGAGGAGGAGGATGCTGAGAAG
GGCGGGGAAAGGGGAGGTTGCAGATGGGTTCTACCAGATTCGCTCGGATTGCACCCACAA
GGTCCCCGAGACCAAGTTCAAGATCAAGGTTGGGAAAACGTTGAGCGTTCGGAAATGGCA
TGCTGCGTTTACGCGTGAAGGCCGTTTGGATATTGCTTCGGTTCTGAACCGGATACAGAA
AGGGGGTGTCCATCCTACAATCAGGGGAGAGGTCTGGGAGTTTTTACTTGGCTGTTTTGA
TCCTGGGAGCACTTTTGATGAGCGCGAGCAGATTAGGGAGAAAAGAAGAATACAATATGC
CATATGGAAGCAAGAATGCAAAGATATGGACTCCCATGTTGGTAGCGGTAAAATTATCAC
AGCCCCAATTATAACTGAGGATGGAAAACCTATTAAGGATCCTTTGGTTTTGCTCGAAGC
TACTTCAGACCAGCACACAATGCAAGGTAGTTCATCCAGCAGCAGGAACGAAAATGAGGT
GGACAAGTCCGAAAATTGTGTGGTGGATAAACAAATTATCGAATGGAAGCTTTTGCTACA
TCAAATTGGCCTTGATGTGCTGCGCACTGATCGATCCATGGTGTTTTATGAGAACAAAGA
AAATCTTTCGAAGTTATGGGATATTCTTGCTGTATATGCTTGGATCGACAAAGAAATTGG
CTATTGTCAAGGAATGAGTGATTTATGCTCACCGATGATAGTGCTGCTCAACGACGAAGC
AGATGCATTTTGGTGCTTTGAGAGATTAATGCGTAGACTGATGCACACAGCAATCTGTTG
GGGTGGAGAACCAGCTTCAGCACCTTGCGTCTATCATTCAAGTGCTTGACCCAAAATTAC
ATGACCACCTAGAAACACTTGGTGGGGGTGATTATCTCTTTGCATTCCGCATGTTCATGG
TATTGTTTCGGCGTGAATTATCATTTGGGGACTCACTATACCTTTGGGAGATGATGTGGG
CTCTAGAATATGATCCTGACATCTTCTCCACATATGAACATATTGATGCTGCAACTGGTG
TAACTCCAGGACATAGGCAAAAAGTAAAATCAATCCGCCAATTTGGCAAGTACGAGAGAG
ACAATATGAAGAATGGGGCTACTAGTGACAACGATGGTCCTGTTCCGATTTCTGTTTTCC
TGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGAAGCTCGAGGGATTG
ATGATGTTATTAGGATTTTGAATGATGTTAATGGGAATTTGGATGCGAAAAAGGCTTGCG
CTGTTGCATTGAAACTTCACAGGAAATACCTTAAAAAGATCCAGGGAAAGAAGCCATAAC
AACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTACTCCTGCTTTTCTCC
TAATTTGTGAGAAAAATGTACAAAGTTCGTTAATTTGTGGCTGGTAAGAATTCTACCACT
AAACTATAGCCACCATATAACACACGGAGAATATTACATGTAACATTATTTATTGATGAA
TCAATGGAGGCCAAAGGGAAACAACTCATGGTTGCTTTTAAAAAAATTCAAAAAAAAA

consensusID : consensus_13614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 831
fasta sequence

                              [TTGGTGCTTTGAGAGATTAATGCGTAGACTGCGAGGAAATTTCAGATGCACACAGCAATCTGTTGGGGTGGAGAACCAGCTTCAGCACCTTGCGTCTATCATTCAAGTGCTTGACCCAAAATTACATGACCACCTAGAAACACTTGGTGGGGGTGATTATCTCTTTGCATTCCGCATGTTCATGGTATTGTTTCGGCGTGAATTATCATTTGGGGACTCACTATACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGACATCTTCTCCACATATGAACATATTGATGCTGCAACTGGTGTAACTCCAGGACATAGGCAAAAAGTAAAATCAATTCGCCAATTTGGCAAGTACGAGAGAGACAATATGAAGAATGGGGCTACTAGTGACAACGATGGTCCTGTTCCGATTTCTGTTTTCCTGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGAAGCTCGAGGGATTGATGATGTTATTAGGATTTTGAATGATGTTAATGGGAATTTGGATGCGAAAAAGGCTTGCGCTGTTGCATTGAAACTTCACAGGAAATACCTTAAAAAGATCCAGGGAAAGAAGCCATAACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTACTCCTGCTTTTCTCCTAATTTGTGAGAAAAATGTACAAAGTTCGTTAATTTGTGGCTGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGTACCATTATTGATTGATGAATCAATGGAGGCCAAAGGGAAACAAAAAAAAGAAAAAAAAAAAAAAA]

[-] EMBL CB672370             [TTGGTGCTTTGAGAGATTAATGCGTAGACTGCGAGGAAATTTCAGATGCACACAGCAATCTGTTGGGGTGGAGAACCAGCTTCAGCACCTTGCGTCTATCATTCAAGTGCTTGACCCAAAATTACATGACCACCTAGAAACACTTGGTGGGGGTGATTATCTCTTTGCATTCCGCATGTTCATGGTATTGTTTCGGCGTGAATTATCATTTGGGGACTCACTATACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGACATCTTCTCCACATATGAACATATTGATGCTGCAACTGGTGTAACTCCAGGACATAGGCAAAAAGTAAAATCAATTCGCCAATTTGGCAAGTACGAGAGAGACAATATGAAGAATGGGGCTACTAGTGACAACGATGGTCCTGTTCCGATTTCTGTTTTCCTGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGAAGCTCGAGGGATTGATGATGTTATTAGGATTTTGAATGATGTTAATGGGAATTTGGATGCGAAAAAGGCTTGCGCTGTTGCATTGAAACTTCACAGGAAATACCTTAAAAAGATCCAGGGAAAGAAGCCATAACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTACTCCTGCTTTTCTCCTAATTTGTGAGAAAAATGTACAAAGTTCGTTAATTTGTGGCTGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGTACCATTATTGATTGATGAATCAATGGAGGCCAAAGGGAAACAAAAAAAAGA              ]
[+] EMBL AU030433             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCCATAACANCGAGCTCCGGGTTACNCCTGGTTTTGATCNTGGCTCTGTTTTACTCCTGCTTTTCTCCTAATTTGTGAGAAAAATGTNCAAAGTTCGTTAATTTGTGGCTGGTAAGAATTCTACCNCTAAACTATAGCCNCCATATAACACACGGAGAATNTTACATGTAACATTATTTATTGATGAATCAATGGNGGCCAANGGGANACAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13614#1
TTGGTGCTTTGAGAGATTAATGCGTAGACTGCGAGGAAATTTCAGATGCACACAGCAATC
TGTTGGGGTGGAGAACCAGCTTCAGCACCTTGCGTCTATCATTCAAGTGCTTGACCCAAA
ATTACATGACCACCTAGAAACACTTGGTGGGGGTGATTATCTCTTTGCATTCCGCATGTT
CATGGTATTGTTTCGGCGTGAATTATCATTTGGGGACTCACTATACCTTTGGGAGATGAT
GTGGGCTCTAGAATATGATCCTGACATCTTCTCCACATATGAACATATTGATGCTGCAAC
TGGTGTAACTCCAGGACATAGGCAAAAAGTAAAATCAATTCGCCAATTTGGCAAGTACGA
GAGAGACAATATGAAGAATGGGGCTACTAGTGACAACGATGGTCCTGTTCCGATTTCTGT
TTTCCTGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGAAGCTCGAGG
GATTGATGATGTTATTAGGATTTTGAATGATGTTAATGGGAATTTGGATGCGAAAAAGGC
TTGCGCTGTTGCATTGAAACTTCACAGGAAATACCTTAAAAAGATCCAGGGAAAGAAGCC
ATAACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTACTCCTGCTTT
TCTCCTAATTTGTGAGAAAAATGTACAAAGTTCGTTAATTTGTGGCTGGTAAGAATTCTA
CCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGTACCATTATTGATTG
ATGAATCAATGGAGGCCAAAGGGAAACAAAAAAAAGAAAAAAAAAAAAAAA

consensusID : consensus_13614#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [GNGCCTTCCCCCGGGGGTGTTTTCCNCTTNTCCCTTGGCGTTCTCTNCGGNATCCCGTGTGGGCNTCCTTGGTTNTCTNAGCTCCCTGGCTTTTCNTCCTACATTTGTGAGACAAAATGTACAAAGTTCGCTTCAATTTNGTGGCTGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGTAACATTATTTATTGATGAATCAATGGAGGCCAAAGGGAAACAACTCATGGTTGCTTTTAAAAAAA]

[+] EMBL AU162437             [GNGCCTTCCCCCGGGGGTGTTTTCCNCTTNTCCCTTGGCGTTCTCTNCGGNATCCCGTGTGGGCNTCCTTGGTTNTCTNAGCTCCCTGGCTTTTCNTCCTACATTTGTGAGACAAAATGTACAAAGTTCGCTTCAATTTNGTGGCTGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGTAACATTATTTATTGATGAATCAATGGAGGCCAAAGGGAAACAACTCATGGTTGCTTTTAAAAAAA]




>consensus_13614#2
GNGCCTTCCCCCGGGGGTGTTTTCCNCTTNTCCCTTGGCGTTCTCTNCGGNATCCCGTGT
GGGCNTCCTTGGTTNTCTNAGCTCCCTGGCTTTTCNTCCTACATTTGTGAGACAAAATGT
ACAAAGTTCGCTTCAATTTNGTGGCTGGTAAGAATTCTACCACTAAACTATAGCCACCAT
ATAACACACGGAGAATATTACATGTAACATTATTTATTGATGAATCAATGGAGGCCAAAG
GGAAACAACTCATGGTTGCTTTTAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13614#0      CTAGAGTCTTTCTTGCTTCTCCTGAGTCCTGACTTCTTGATCCACCGATTGTTCTTCGAT 60
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      TTCTTGCTTCTTGATTCGTCGCCGCTGCTGCTGCTGGAGGCAGAAAGGGAGCACAAGATC 120
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      GAGCAATCCAAGCTGCAATTAGAGGAGGAGGAAGAGGAAGAGGAGGAGGATGCTGAGAAG 180
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      GGCGGGGAAAGGGGAGGTTGCAGATGGGTTCTACCAGATTCGCTCGGATTGCACCCACAA 240
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      GGTCCCCGAGACCAAGTTCAAGATCAAGGTTGGGAAAACGTTGAGCGTTCGGAAATGGCA 300
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      TGCTGCGTTTACGCGTGAAGGCCGTTTGGATATTGCTTCGGTTCTGAACCGGATACAGAA 360
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      AGGGGGTGTCCATCCTACAATCAGGGGAGAGGTCTGGGAGTTTTTACTTGGCTGTTTTGA 420
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      TCCTGGGAGCACTTTTGATGAGCGCGAGCAGATTAGGGAGAAAAGAAGAATACAATATGC 480
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      CATATGGAAGCAAGAATGCAAAGATATGGACTCCCATGTTGGTAGCGGTAAAATTATCAC 540
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      AGCCCCAATTATAACTGAGGATGGAAAACCTATTAAGGATCCTTTGGTTTTGCTCGAAGC 600
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      TACTTCAGACCAGCACACAATGCAAGGTAGTTCATCCAGCAGCAGGAACGAAAATGAGGT 660
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      GGACAAGTCCGAAAATTGTGTGGTGGATAAACAAATTATCGAATGGAAGCTTTTGCTACA 720
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      TCAAATTGGCCTTGATGTGCTGCGCACTGATCGATCCATGGTGTTTTATGAGAACAAAGA 780
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      AAATCTTTCGAAGTTATGGGATATTCTTGCTGTATATGCTTGGATCGACAAAGAAATTGG 840
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      CTATTGTCAAGGAATGAGTGATTTATGCTCACCGATGATAGTGCTGCTCAACGACGAAGC 900
consensus_13614#1      ------------------------------------------------------------
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      AGATGCATTTTGGTGCTTTGAGAGATTAATGCGTAGACTG--------------ATGCAC 946
consensus_13614#1      ---------TTGGTGCTTTGAGAGATTAATGCGTAGACTGCGAGGAAATTTCAGATGCAC 51
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      ACAGCAATCTGTTGGGGTGGAGAACCAGCTTCAGCACCTTGCGTCTATCATTCAAGTGCT 1006
consensus_13614#1      ACAGCAATCTGTTGGGGTGGAGAACCAGCTTCAGCACCTTGCGTCTATCATTCAAGTGCT 111
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      TGACCCAAAATTACATGACCACCTAGAAACACTTGGTGGGGGTGATTATCTCTTTGCATT 1066
consensus_13614#1      TGACCCAAAATTACATGACCACCTAGAAACACTTGGTGGGGGTGATTATCTCTTTGCATT 171
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      CCGCATGTTCATGGTATTGTTTCGGCGTGAATTATCATTTGGGGACTCACTATACCTTTG 1126
consensus_13614#1      CCGCATGTTCATGGTATTGTTTCGGCGTGAATTATCATTTGGGGACTCACTATACCTTTG 231
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      GGAGATGATGTGGGCTCTAGAATATGATCCTGACATCTTCTCCACATATGAACATATTGA 1186
consensus_13614#1      GGAGATGATGTGGGCTCTAGAATATGATCCTGACATCTTCTCCACATATGAACATATTGA 291
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      TGCTGCAACTGGTGTAACTCCAGGACATAGGCAAAAAGTAAAATCAATCCGCCAATTTGG 1246
consensus_13614#1      TGCTGCAACTGGTGTAACTCCAGGACATAGGCAAAAAGTAAAATCAATTCGCCAATTTGG 351
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      CAAGTACGAGAGAGACAATATGAAGAATGGGGCTACTAGTGACAACGATGGTCCTGTTCC 1306
consensus_13614#1      CAAGTACGAGAGAGACAATATGAAGAATGGGGCTACTAGTGACAACGATGGTCCTGTTCC 411
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      GATTTCTGTTTTCCTGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGA 1366
consensus_13614#1      GATTTCTGTTTTCCTGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGA 471
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      AGCTCGAGGGATTGATGATGTTATTAGGATTTTGAATGATGTTAATGGGAATTTGGATGC 1426
consensus_13614#1      AGCTCGAGGGATTGATGATGTTATTAGGATTTTGAATGATGTTAATGGGAATTTGGATGC 531
consensus_13614#2      ------------------------------------------------------------
                                                                                   

consensus_13614#0      GAAAAAGGCTTGCGCTGTTGCATTGAAACTTCACAGGAAATACCTTAAAAAGATCCAGGG 1486
consensus_13614#1      GAAAAAGGCTTGCGCTGTTGCATTGAAACTTCACAGGAAATACCTTAAAAAGATCCAGGG 591
consensus_13614#2      -----------------------------------GNGCCTTCCCCCGGGGGTGTTTTCC 25
                                                          *    * **       *        

consensus_13614#0      AAAGAAGCCATAACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTAC 1546
consensus_13614#1      AAAGAAGCCATAACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTAC 651
consensus_13614#2      NCTTNTCCCTTGGCGTTCTCTNCGGNATCCCGTGTGGGCNTCCTTGGTTNTCTNAGCTCC 85
                              ** *  *        * *  *  *   ***   *  * *    ***    * *

consensus_13614#0      TCCTGCTTTTCTCCTA-ATTTGTGAGA-AAAATGTACAAAGTTCGTT---AATTTGTGGC 1601
consensus_13614#1      TCCTGCTTTTCTCCTA-ATTTGTGAGA-AAAATGTACAAAGTTCGTT---AATTTGTGGC 706
consensus_13614#2      CTGGCTTTTCNTCCTACATTTGTGAGACAAAATGTACAAAGTTCGCTTCAATTTNGTGGC 145
                             ***  ***** ********** ***************** *   * ** *****

consensus_13614#0      TGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGT 1661
consensus_13614#1      TGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGT 766
consensus_13614#2      TGGTAAGAATTCTACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGT 205
                       ************************************************************

consensus_13614#0      AACATTATTTATTGATGAATCAATGGAGGCCAAAGGGAAACAACTCATGGTTGCTTTTAA 1721
consensus_13614#1      ACCATTATTGATTGATGAATCAATGGAGGCCAAAGGGAAACAAAAAAAAG--------AA 818
consensus_13614#2      AACATTATTTATTGATGAATCAATGGAGGCCAAAGGGAAACAACTCATGGTTGCTTTTAA 265
                       * ******* *********************************   *  *        **

consensus_13614#0      AAAAATTCAAAAAAAAA 1738
consensus_13614#1      AAAAA---AAAAAAAA- 831
consensus_13614#2      AAAAA------------ 270
                       *****