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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 855 fasta sequence
[GAGTAGAAAGGAAGAAGCAAAGCAATCTCCGTGAGCGGTGATGGCGCAGCAG-TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT-GGAGACC-AAAGTGCAGGGCAAGTTTCA-GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC-AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTC-GGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCT-GTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAACTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCCTGAGCTGACTGACTTAAAATCAGAGGTGTAGATTTGATACATCTTAAATCATTTTAGTACATTCAACCTTTTGTG]
[+] EMBL CF313897 [GAGTAGAAAGGAAGAAGCAAAGCAATCTCCGTGAGCGGTGATGGCGCAGCAG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAACATGGGTCGCTGGTTCCCGTTGTTTCCTTTGTCGGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCA ]
[+] EMBL AK103317 [ CAAAGCAATCTCCGTGAGCGGTGATGGCGCAGCAG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTC GGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCT GTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAACTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCCTGAGCTGACTGACTTAAAATCAGAGGTGTAGATTTGATACATCTTAAATCATTTTAGTACATTCAACCTTTTGTG]
[+] EMBL BE041002 [ CAATCTCCGTGAGCGGTGATGGCGCAGCAG TGGCGATCTCTCCTCTTTCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTC GGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCTGGTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGA NAACTAGACT AGGCAT ATCTGT ATTTTGG CTTCTGTA TTGAGC TCTC GGTGAGGCCT A CTG CTGGCTAAAt ]
[+] EMBL AU223101 [ ATCTCCGTGAGCGGTGATGGCGCAGCAG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTG ]
[+] EMBL OSS3659A [ ATCTCCGTGAGCGGTGATGGCGCA NAG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCG CTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATAATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACNGTGTTTCCACAAAAGGCCGCACTTCAGGAGGCTTANT AAAGGCCATGTTTCCACTTGATATTCTTGCTGA ]
[+] EMBL OSS3431A [ ATCTCCGTGAGCGGTGATGGCGCA NAGATGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGNCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCG CTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGNCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGGCC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGnt ]
[+] EMBL CF331637 [ TCTCCGTGAGCGGTGATGGCGCAGCAG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAG ]
[+] EMBL C73802 [ TGAGCGGTGATGGCGCANANG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCG CTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGGAGACCAAAAGTGCAGGGCAAGTTTCAGGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAAGGCCGCACTTCAGGAGGCTTAATNNAAGGCCATGTTTTCACTTG ]
[+] EMBL BP184776 [ TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTC GGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAG ]
[-] EMBL CF331638 [ GGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTC GGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCT GTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAACTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCCTGAGCTGACTGACTTAAAATCAGAGGTGTAGATTTGATACATCTTAAATCATTTTAGTACATTCAAaaaaa ]
consensusID : consensus_13637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 838 fasta sequence
[CGTGAGCGGTGATGGCGCAGCAGTGGCGATCTCTCCTCTTTCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGTGCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTCGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCTGTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAACTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCCTGAGCTGACTGACTTAAAATCAGAGGGGTAGATTTGATACATCTTAAATCATTTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA759088 [CGTGAGCGGTGATGGCGCAGCAGTGGCGATCTCTCCTCTTTCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGTGCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTCGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCTGTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAACTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCCTGAGCTGACTGACTTAAAATCAGAGGGGTAGATTTGATACATCTTAAATCATTTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BE530961 [ GTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGTGCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTCGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAAT ]
[+] EMBL C74971 [ TGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGTGCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGANAGACCTCCCCANCAGANGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTNGTTTCCTTTGTCGGTGTGTTTATCTAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13637#0 GAGTAGAAAGGAAGAAGCAAAGCAATCTCCGTGAGCGGTGATGGCGCAGCAGTGGCGATC 60
consensus_13637#1 -----------------------------CGTGAGCGGTGATGGCGCAGCAGTGGCGATC 31
*******************************
consensus_13637#0 TCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGC 120
consensus_13637#1 TCTCCTCTTTCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGC 91
********* **************************************************
consensus_13637#0 GCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCG 180
consensus_13637#1 GCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCG 151
************************************************************
consensus_13637#0 CCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTT 240
consensus_13637#1 CCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTT 211
************************************************************
consensus_13637#0 GAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGAT 300
consensus_13637#1 GAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGAT 271
************************************************************
consensus_13637#0 TGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGT 360
consensus_13637#1 TGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGT 331
************************************************************
consensus_13637#0 GCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGC 420
consensus_13637#1 GCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGC 391
************************************************************
consensus_13637#0 ACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCC 480
consensus_13637#1 ACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCC 451
************************************************************
consensus_13637#0 CCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGT 540
consensus_13637#1 CCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGT 511
************************************************************
consensus_13637#0 TGTTTCCTTTGTCGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGC 600
consensus_13637#1 TGTTTCCTTTGTCGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGC 571
************************************************************
consensus_13637#0 AAAAGGAAGCAAGAAGAGGCGCTAAATCTGTTTTGTTGCCTTTTTTTTGTTGTATTTGGT 660
consensus_13637#1 AAAAGGAAGCAAGAAGAGGCGCTAAATCTGTTTTGTTGCCTTTTTTTTGTTGTATTTGGT 631
************************************************************
consensus_13637#0 TTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAA 720
consensus_13637#1 TTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAA 691
************************************************************
consensus_13637#0 CTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCC 780
consensus_13637#1 CTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCC 751
************************************************************
consensus_13637#0 TGAGCTGACTGACTTAAAATCAGAGGTGTAGATTTGATACATCTTAAATCATTTTAGTAC 840
consensus_13637#1 TGAGCTGACTGACTTAAAATCAGAGGGGTAGATTTGATACATCTTAAATCATTTTAGTAA 811
************************** ********************************
consensus_13637#0 ATTCAACCTTTTGTG------------ 855
consensus_13637#1 AAAAAAAAAAAAAAAAAAAAAAAAAAA 838
* **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||