cluster # 13641

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Oryza sativa
cluster # 13641 cluster # 13641 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13641#0 length = 2480 sequences # 12

consensus_13641#1 length = 451 sequences # 1

consensusID : consensus_13641#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 2480
fasta sequence

                              [AAGAAAAATTTCTGTGTCCGTTCCATCCTAGTCCTTGGCAAGTCTTCTCAAGCAGGAGGAGGACTTGCCATGGTGTTGATTTGGGGCGGGAAGAAGCATCGGGCTCGCCGTCTGCTCCTCTGATCGGCCTCCTCAGTTGACACAGCAAGATTTGGTCCGGGGGGAAGGGGAGCAGCCGCCATGTTTGGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCACGGGCTGACAGATTTGGGGTAAACAGGATAGATGCAAAGACTACTGAGAAGATTAAAGTGATAAGTGAAGGCAACATACCATGGCACCGCCGCATTCTAGACCCTGGGAGTAGCATGGTGCTAATGTGGAACAGGGTGTTCCTAGGGTCCTGTTTGTTTGCTCTTTTCATTGATCCTTTCTTCTACTACCTGCCGCTAGTTCATGTACTAGATGAAAGTACCAACCGTTCATGCATTGCCAAGGACCGGCGATTGAGCATAACTATCACTGTTCTTAGGACATTTGCGGACTTGTTTTACATGCTGAACATCATGGTCAAGTTCCATACTGCATATGTAGATCCAAAGTCCAGAGTACTTGGGAAGGGAGAGCTTGTCTTGGACTTAAAGAAGATTCAACGGAGATATCTCAGAACAGATTTCTTTATTGACCTACTTGCAACGATCCCTCTTCCTCAGGTTACCGTGTGGATTATTATGCCTTCAATAAAAAACTCAGATTACAACATCCGGAACACCACATTTGCTCTGGTTATTATGATTCAGTATATATTCAGAATGTATCTCA-TTGTACCATTAA-GCAATCAAATTATCAAAGCAGC-TGGAGTA-GTTGCCAAGTCAGCCTGGCTAGGAGCAGCATACAATCTTCTGTACTACATGCTTGCAAGTCATATTACTGGAGCAATATACTATCTTCTCTCCATTGAACGGCAAATTACATGTTGGAATCAGCAGTGCCTAAATGAGTCTTGTAGTTTTAACTTCATAAGCTGTGACAATACTGGTTCTAGCAGTTATCTTACTTGGGGAAAGAACACAAGTATATTTGACAATTGTGATCCCAATCGTAATTCAAGTGCTAACCCCCCACCATTTAATTATGGAATGTTTTCAACCGCACTGAGTAAAGGTGCTGTTTCTGCTCCATTTCTTGAGAAGTACTTCTTTTGTCTGTGGTGGGGCTTGCTGCAGCTTAGTTCTAGTGGAAATCCTCTTCAGACAAGTGCATACATCGCAGAGAACACATTTGCCATAGCAATTGGTGCTCTTAGTCTCGTACTCTTTGCTCAGCTGATTGGCAATATGCAGACATACTTGCAGTCCATCAGTAAAAGGCTTGAAGAGTGGAGGCTCCGGCAAAGAGATATGGAGGAGTGGATGAGACATCATCAGCTCCCTGATGAACTTCAAGATCGTGTCCGGCGATTCGTTCAGGTTAAATGGCTTGCAACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCTGCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTGTCCCATTTTTCTCGGAGATGGATTACCAACTTCTAGACGCCATCTGCGAGCGTCTGGTGTCTTTCCTGTGCCCTGAGCGCACATACATTTCTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCGTCATACGCGGTAAGCTAGAGAGCTCCACAACCAACGGAGGCCGCAGCAACTTCTTCAACTCCATCATCCTGCGCCCTGGTGATTTCGCTGGCGAGGAGCTGCTCACATGGGCTTTACTTCCAAAGACCAATGTCCATTTCCCGCTTTCGACGAGGACAGTGCAGAGCCTTACAGAGGTTGAGGCCTTTGCCCTGAGAGCCGAGGA-CCTCAAGTTCGTCGCGAACCAGTTCAGAAGACTACACAGCAAG-AAGCTCCAGCACACGTTCCGGTTCTACTCCCACCATTGGAGG-ACATGGGCTGCCTGC-TTCATCCAGGCTGCTTGGCGGCAGCACCAGAGGAGAAAGCTGGCAGAGAGCCTGAGCCGGTGGGAATCATACTCATGGTGGCCAGAAGAACATCCACCTGCTGACAAGCCTAAACAGGAGGGCACTTCAAGCAGTACCAAGACTATTGCTGAGAGTGCCATTGCTCAAATGCACAAGT-TCGCCTCCGCTTCCAGAAGGTTCCGTGCCGACGATACCGCCATCCGGAGGCTGCAGAAGCCTGATGAGCCTGACTTCTCTGCAGATCATTTCGATTGAGGCTGAT-GTTTCCTGCTTTAAAAAAAC-T-GTT-GTAAAACCACTACT-GT-GCACT-GCATTGTATTCAATAGCCATATAGTAATCCATGTGTATCTCAAAGATGAAACCAAACTGGTCCTTTGTGTAATTCAAATATACGCATTTTAGGA------AAAAAAAAAAAA]

[+] EMBL AU174245             [AAGAAAAATTTCTGTGTCCGTTCCATCCTAGTCCTTGGCAAGTCTTCTCAAGCAGGAGGAGGACTTGCCATGGTGTTGATTTGGGGCGGGAAGAAGCATCGGGCTCGCCGTCTGCTCCTCTGATCGGCCTCCTCAGTTGACACAGCAAGATTTGGTCCGGGGGGAAGGGGAGCAGCCGCCATGTTTGGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCACGGGCTGACAGATTTGGGGTAAACAGGATAGATGCAAAGACTACTGAGAAGATTAAAGTGATAAGTGAAGGCAACATACCATGGCACCGCCGCATTCTAGACCCTGGGAGTAGCATGGTGCTAATGTGGAACAGGGTGTTCCTAGGGTCCTGTTTGTTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK102179             [                     TCCATCCTAGTCCTTGGCAAGTCTTCTCAAGCAGGAGGAGGACTTGCCATGGTGTTGATTTGGGGCGGGAAGAAGCATCGGGCTCGCCGTCTGCTCCTCTGATCGGCCTCCTCAGTTGACACAGCAAGATTTGGTCCGGGGGGAAGGGGAGCAGCCGCCATGTTTGGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCACGGGCTGACAGATTTGGGGTAAACAGGATAGATGCAAAGACTACTGAGAAGATTAAAGTGATAAGTGAAGGCAACATACCATGGCACCGCCGCATTCTAGACCCTGGGAGTAGCATGGTGATAATGTGGAACAGGGTGTTCCTAGGGTCCTGTTTGTTTGCTCTTTTCATTGATCCTTTCTTCTACTACCTGCCGCTAGTTCATGTACTAGATGAAAGTACCAACCGTTCATGCATTGCCAAGGACCGGCGATTGAGCATAACTATCACTGTTCTTAGGACATTTGCGGACTTGTTTTACATGCTGAACATCATGGTCAAGTTCCATACTGCATATGTAGATCCAAAGTCCAGAGTACTTGGGAAGGGAGAGCTTGTCTTGGACTTAAAGAAGATTCAACGGAGATATCTCAGAACAGATTTCTTTATTGACCTACTTGCAACGATCCCTCTTCCTCAGGTTACCGTGTGGATTATTATGCCTTCAATAAAAAACTCAGATTACAACATCCGGAACACCACATTTGCTCTGGTTATTATGATTCAGTATATATTCAGAATGTATCTCA TTGTACCATTAA GCAATCAAATTATCAAAGCAGC TGGAGTA GTTGCCAAGTCAGCCTGGCTAGGAGCAGCATACAATCTTCTGTACTACATGCTTGCAAGTCATATTACTGGAGCAATATACTATCTTCTCTCCATTGAACGGCAAATTACATGTTGGAATCAGCAGTGCCTAAATGAGTCTTGTAGTTTTAACTTCATAAGCTGTGACAATACTGGTTCTAGCAGTTATCTTACTTGGGGAAAGAACACAAGTATATTTGACAATTGTGATCCCAATCGTAATTCAAGTGCTAACCCCCCACCATTTAATTATGGAATGTTTTCAACCGCACTGAGTAAAGGTGCTGTTTCTGCTCCATTTCTTGAGAAGTACTTCTTTTGTCTGTGGTGGGGCTTGCTGCAGCTTAGTTCTAGTGGAAATCCTCTTCAGACAAGTGCATACATCGCAGAGAACACATTTGCCATAGCAATTGGTGCTCTTAGTCTCGTACTCTTTGCTCAGCTGATTGGCAATATGCAGACATACTTGCAGTCCATCAGTAAAAGGCTTGAAGAGTGGAGGCTCCGGCAAAGAGATATGGAGGAGTGGATGAGACATCATCAGCTCCCTGATGAACTTCAAGATCGTGTCCGGCGATTCGTTCAGGTTAAATGGCTTGCAACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCTGCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTGTCCCATTTTTCTCGGAGATGGATTACCAACTTCTAGACGCCATCTGCGAGCGTCTGGTGTCTTTCCTGTGCCCTGAGCGCACATACATTTCTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCGTCATACGCGGTAAGCTAGAGAGCTCCACAACCAACGGAGGCCGCAGCAACTTCTTCAACTCCATCATCCTGCGCCCTGGTGATTTCGCTGGCGAGGAGCTGCTCACATGGGCTTTACTTCCAAAGACCAATGTCCATTTCCCGCTTTCGACGAGGACAGTGCAGAGCCTTACAGAGGTTGAGGCCTTTGCCCTGAGAGCCGAGGA CCTCAAGTTCGTCGCGAACCAGTTCAGAAGACTACACAGCAAG AAGCTCCAGCACACGTTCCGGTTCTACTCCCACCATTGGAGG ACATGGGCTGCCTGC TTCATCCAGGCTGCTTGGCGGCAGCACCAGAGGAGAAAGCTGGCAGAGAGCCTGAGCCGGTGGGAATCATACTCATGGTGGCCAGAAGAACATCCACCAGCTGACAAGCCTAAACAGGAGGGCACTTCAAGCAGTACCAAGACTATTGCTGAGAGTGCCATTGCTCAAATGCACAAGT TCGCCTCCGCTTCCAGAAGGTTCCGTGCCGACGATACCGCCATCCGGAGGCTGCAGAAGCCTGATGAGCCTGACTTCTCTGCAGATCATTTCGATTGAGGCTGAT GTTTCCTGCTTTTAAAAAAC T GTT GTAAAACCACTACT GT GCACT GCATTGTATTCAATAGCCATATAGTAATCCATGTGTATCTCAAAGATGAAACCAAACTGGTCCTTTGTGTAATTCAAATATACGCA                          ]
[+] EMBL AK059452             [                                                                                                                                                                                                                                                                                                                                                                                           GCATTCTAGACCCTGGGAGTAGCATGGTGCTAATGTGGAACAGGGTGTTCCTAGGGTCCTGTTTGTTTGCTCTTTTCATTGATCCTTTCTTCTACTACCTGCCGCTAGTTCATGTACTAGATGAAAGTACCAACCGTTCATGCATTGCCAAGGACCGGCGATTGAGCATAACTATCACTGTTCTTAGGACATTTGCGGACTTGTTTTACATGCTGAACATCATGGTCAAGTTCCATACTGCATATGTAGATCCAAAGTCCAGAGTACTTGGGAAGGGAGAGCTTGTCTTGGACTTAAAGAAGATTCAACGGAGATATCTCAGAACAGATTTCTTTATTGACCTACTTGCAACGATCCCTCTTCCTCAGGTTACCGTGTGGATTATTATGCCTTCAATAAAAAACTCAGATTACAACATCCGGAACACCACATTTGCTCTGGTTATTATGATTCAGTATATATTCAGAATGTATCTCA TTGTACCATTAA GCAATCAAATTATCAAAGCAGC TGGAGTA GTTGCCAAGTCAGCCTGGCTAGGAGCAGCATACAATCTTCTGTACTACATGCTTGCAAGTCATATTACTGGAGCAATATACTATCTTCTCTCCATTGAACGGCAAATTACATGTTGGAATCAGCAGTGCCTAAATGAGTCTTGTAGTTTTAACTTCATAAGCTGTGACAATACTGGTTCTAGCAGTTATCTTACTTGGGGAAAGAACACAAGTATATTTGACAATTGTGATCCCAATCGTAATTCAAGTGCTAACCCCCCACCATTTAATTATGGAATGTTTTCAACCGCACTGAGTAAAGGTGCTGTTTCTGCTCCATTTCTTGAGAAGTACTTCTTTTGTCTGTGGTGGGGCTTGCTGCAGCTTAGTTCTAGTGGAAATCCTCTTCAGACAAGTGCATACATCGCAGAGAACACATTTGCCATAGCAATTGGTGCTCTTAGTCTCGTACTCTTTGCTCAGCTGATTGGCAATATGCAGACATACTTGCAGTCCATCAGTAAAAGGCTTGAAGAGTGGAGGCTCCGGCAAAGAGATATGGAGGAGTGGATGAGACATCATCAGCTCCCTGATGAACTTCAAGATCGTGTCCGGCGATTCGTTCAGGTTAAATGGCTTGCAACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCTGCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTGTCCCATTTTTCTCGGAGATGGATTACCAACTTCTAGACGCCATCTGCGAGCGTCTGGTGTCTTTCCTGTGCCCTGAGCGCACATACATTTCTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCGTCATACGCGGTAAGCTAGAGAGCTCCACAACCAACGGAGGCCGCAGCAACTTCTTCAACTCCATCATCCTGCGCCCTGGTGATTTCGCTGGCGAGGAGCTGCTCACATGGGCTTTACTTCCAAAGACCAATGTCCATTTCCCGCTTTCGACGAGGACAGTGCAGAGCCTTACAGAGGTTGAGGCCTTTGCCCTGAGAGCCGAGGA CCTCAAGTTCGTCGCGAACCAGTTCAGAAGACTACACAGCAAG AAGCTCCAGCACACGTTCCGGTTCTACTCCCACCATTGGAGG ACATGGGCTGCCTGC TTCATCCAGGCTGCTTGGCGGCAGCACCAGAGGAGAAAGCTGGCAGAGAGCCTGAGCCGGTGGGAATCATACTCATGGTGGCCAGAAGAACATCCACCAGCTGACAAGCCTAAACAGGAGGGCACTTCAAGCAGTACCAAGACTATTGCTGAGAGTGCCATTGCTCAAATGCACAAGT TCGCCTCCGCTTCCAGAAGGTTCCGTGCCGACGATACCGCCATCCGGAGGCTGCAGAAGCCTGATGAGCCTGACTTCTCTGCAGATCATTTCGATTGAGGCTGAT GTTTCCTGCTTTAAAAAAAC T GTT GTAAAACCACTACT GT GCACT GCATTGTATTCAATAGCCATATAGTAATCCATGTGTATCTCAAAGATGAAACCAAACTGGTCCTTTGTGTAATTCAAATATACGCA                          ]
[+] EMBL C72006               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GAAAGTACCAACCGTTCATGCATTGCCAAGGACCGGCGATTGAGCATAACTATCACTGTTCTTAGGACATTTGCGGACTTGTTTTACATGCTGAACATCATGGTCAAGTTCCATACTGCATATGTAGATCCAAAGTCCAGAGTACTTGGGAAGGGAGAGCTTGTNTTGGACTTAAAGAAGATTCAACGGAGATATCTCAGAACAGATTTCTTTATTGACCTACTTGCAACGATCCCTCTTCCTCAGGTTACCGTGTGGATTATTATGCCTTCAATAAAAAACTCAGATTACAACATCCGGAACACCACATTTGCTCTGGTTATTATGATTCAGTATATATTCAGAATGTATCTCATTTGTACCATTAAGGCAATCAAATTATCAAAGCAGCTTGGNGTAGGTTGCCAAGTCAGCCTGGGTAGGNGCAGCATACAATCTTtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSAA31771            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTTTTGTCTGTGGTGGGGCTTGCTGCAGCTTAGTTCTAGTGGAAATCCTCTTCAGACAAGTGCATACATCGCAGAGAACACATTTGCCATAGCAATTGGTGCTCTTAGTCTCATACTCTTTGCTCAGCTGATTGGCAATATGCAGACATACTTGCAGTCCATCAGTAAAAGGCTTGAATAGTGGAGGCTg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF325851             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTCAGGTTAAATGGCTTGCAACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCTGCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTGTCCCATTTTTCTCGGAGATGGATTACCAACTTCTAGACGCCATCTGCGAGCGTCTGGTGTCTTTCCTGTGCCCTGAGCGCACATACATTTCTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCGTCATACGCGGTAAGCTAGAGAGCTCCACAACCAACGGAGGCCGCAGCAACTTCTTCAACTCCATCATCCTGCGCCCTGGTGATTTCGCTGGCGAGGAGCTGCTCACATGGGCTTTACTTCCAAAGACCAATGTCCATTTTCCGCTTTCGACGAGGACAGTGCAGAGCCTTACAGAGGTTGAGGCCTTTGCCCTGAGAGCCGAGGA CCTCAAGTTCGTCGCGAACCAGTTCAGAAGACTACACAGCAAG AAGCTCCAGCACACGTTCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL OSAA31874            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGTAGAAGAGGAATCCATCTTACAAGCTTTGCCTGCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTGTCCCATTTTTCTCGGAGATGGATTACCAACTTCTAGACGCCATCTGCGAGCGTCTGGTGTCTTTCCTGTGCCCTGAGCGCACAAACATTTCTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCGTCATACGCGGTAAGCTAGAGAGGTCCACAACCAACGGAGGCCGCAGCAACTTCTTCAACTCCATCATCCTGCGCCCTGGTGATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB630213             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATTTCTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCGTCATACGCGGTAAGCTAGAGAGCTCCACAACCAACGGAGGCCGCAGCAACTTCTTCAACTCCATCATCCTGCGCCCTGGTGATTTCGCTGGCGAGGAGCTGCTCACATGGGCTTTACTTCCAAAGACCAATGTCCATTTCCCGCTTTCGACGAGGACAGTGCAGAGCCTTACAGAGGTTGAGGCCTTTGCCCTGAGAGCCGAGGA CCTCAAGTTCGTCGCGAACCAGTTCAGAAGACTACACAGCAAG AAGCTCCAGCACACGTTCCGGTTCTACTCCCACCATTGGAGG ACATGGGCTGCCTGC TTCATCCAGGCTGCTTGGCGGCAGCACCAGAGGAGAAAGCTGGCAGAGAGCCTGAGCCGGTGGGAATCATACTCATGGTGGCCAGAAGAACATCCACCTGCTGACAAGCCTAAACAGGAGGGCACTTCAAGCAGTACCAAGACTATTGCTGAGAGTGCCATTGCTCAAATGCACAAGT TCGCCTCCGCTTCCAGAAGGTTCCGTGCCGACGATACCGCCATCCGGAGGCTGCAGAAGCCTGATGAGCCTGACTTCTCTGCAGATCATTTCGATTGAGGCTGAT GTTTCCTGCTTTAAAAAAACAT GTT GTAAAACCACTACT GT GCACT GCATTGTATTCAATAGCCATATAGTAATCCATGTGTATCTCAAAGATGAAACCAAACTGGTCCTTTGTGTAATTCAAATATACGCATT                        ]
[+] EMBL BQ906831             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CATGGGCTTTACTTCC AAGACCAATGTCCATTTCCCGCTTTCGACGAGGACAGTGCAGAGCCTTACAGAGGTTGAGGCCTTTGCCCTGAGAGCCGAGGA CCTCAAGTTCGTCGCGAACCAGTTCAGAAGACTACACAGCAAG AAGCTCCAGCACACGTTCCGGTTCTACTCCCACCATTGGAGG ACATGGGCTGCCTGC TTCATCCAGGCTGCTTGGCGGCAGCACCAGAGGAGAAAGCTGGCAGAGAGCCTGAGCCGGTGGGAATCATACTCATGGTGGCCAGAAGAACATCCACCTGCTGACAAGCCTAAACAGGAGGGCACTTCAAGCAGTACCAGGACTATTGCTGAGAGTGCCATTGCTCAAATGCACAAGT TCGCCTCCGCTTCCAGAAGGTTCCGTGCCGACGATACCGCCATCCGGAGGCTGCAGAAGCCTGATGAGCCTGACTTCTCTGCAGATCATTTCGATTGAGGCTGAT GTTTCCTGCTTTAAAAAAAC T GTT GTAAAACCACTACT GT GCACT GCATTGTATTCAATAGCCATATAGTAATCCATGTGTATCTCAAAGATGAAACC AACTGGTCCTTTGTGTAATTCAAATATACGCATTTTAGGA      AAAA        ]
[+] EMBL AU101940             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAATGTCCATTTCCCGCTTTCGACGAGGACAGTGCAGAGCCTTACAGAGGTTGAGGCCTTTGCCCTGAGAGCCGAGGA CCTCAAGTTCGTCGCGAACCAGTTCAGAAGACTACACAGCAAG AAGCTCCAGCACACGTTCCGGTTCTACTCCCACCATTGGAGG ACATGGGCTGCCTGC TTCATCCAGGCTGCTTGGCGGCAGCACCAGAGGAGAAAGCTGGCAGAGAGCCTGAGCCGGTGGGAATCATACTCNTGGTGGCCAGAAGAACATCCACCAGCTGACAAGCCTAAACAGGAGGGCACTTCAAGCAGTACCAAGACTATTGCTGAGAGTGCCATTGCTCAAATGCACAAGT TCGCCTCCGCTTCCAGAAGGTTCCGTGCCGACGATACCGCCATCCGGAGGCTGCAGAAGCCTGATGAGCCTGACTTCTCTGCAGATCATTTCGATTGAGGCTGAT GTTTCCTGCTTTAAAAAAAC T GTT GTAAAACCACTACT GT GCACT GCATTGTATTCAATAGCCATATAGTAATCCATGTGTATCTCAAAGATGAAACCAAACTGGTCCTTTGTGTAATTCAAATATACGCATTTTAGGA      GCTGAAAAAAAA]
[+] EMBL BQ907084             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAGTGCAGAGCCTTACAGA GTTGAGGCCTTTGCCCTGAGAGCCGAGGA CCTCAAGTTCGTCGCGAACCAGTTCAGAAGACTACACAGCAAG AAGCTCCAGCACACGTTCCGGTTCTACTCCCACCATTGGAGG ACATGGGCTGCCTGC TTCATCCAGGCTGCTTGGCGGCAGCACCAGAGGAGAAAGCTGGCAGAGAGCCTGAGCCGGTGGGAATCATACTCATGGTGGCCAGAAGAACATCCACCTGCTGACAAGCCTAAACAGGAGGGCACTTCAAGCAGTACCAGGACTATTGCTGAGAGTGCCATTGCTCAAATGCACAAGT TCGCCTCCGCTTCCAGAAGGTTCCGTGCCGACGATACCGCCATCCGGAGGCTGCAGAAGCCTGATGAGCCTGACTTCTCTGCAGATCATTTCGATTGAGGCTGATGGTTTCCTGCTTTAAAAAAAC TGGTTGGTAAAACCACTACTGGTGGCACTGGCATTGTATTCAATAGCCATATAGTAATCCATGTGTATCTCAAAGATGAAACCAAACTGGTCCTTTGTGTAAaaaaaaaaa                               ]
[+] EMBL BI810200             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCCCTGAGAACCGAGGACCCTCAAGTTCGTCGCG ACC GTTCAGAAGACT CACAGCAAGTAAGC CACGCACACTTTCCGGTTCTACTCCCACCATTGGAGGTACAT GGCTGCCTGCGTTCAT CAGGCTGCTTGGCGGCAGCACCAGAGGAGAAAGCTGGCAGAGAGCCTGAGCCGGTGGGAATCATACTCATGGTGGCCAGAAGAACATCCACCTGCTGACAAGCCTAAACAGGAGGGCACTTCAA CAGTACCAGGACTATTGCTGAGAGTGCCATTGCTCAAATGCACAAGTGTCGCCTCCGCTTCCAGAAGGTTCCGTGCCGACGATACCGCCATCCGGAGGCTGCAGAAGCCTGATGAGCCTGACTTCTCTGCAGATCATTTCGATTGAGGCTGAT GTTTCCTGCTTTAAAAAAAC T GTT GTAAAACCACTACT GT GCACT GCATTGTATTC ATAGCCATATAGTAATCCATGTGTATCTCAAAGATGAAACCCAACTGGTCCTTTGTGTAATTCAAATATACGCATTTTAGGAGCTGTGAAAAAAAAA   ]




>consensus_13641#0
AAGAAAAATTTCTGTGTCCGTTCCATCCTAGTCCTTGGCAAGTCTTCTCAAGCAGGAGGA
GGACTTGCCATGGTGTTGATTTGGGGCGGGAAGAAGCATCGGGCTCGCCGTCTGCTCCTC
TGATCGGCCTCCTCAGTTGACACAGCAAGATTTGGTCCGGGGGGAAGGGGAGCAGCCGCC
ATGTTTGGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGGATC
TTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCACGGGCTGACAGA
TTTGGGGTAAACAGGATAGATGCAAAGACTACTGAGAAGATTAAAGTGATAAGTGAAGGC
AACATACCATGGCACCGCCGCATTCTAGACCCTGGGAGTAGCATGGTGCTAATGTGGAAC
AGGGTGTTCCTAGGGTCCTGTTTGTTTGCTCTTTTCATTGATCCTTTCTTCTACTACCTG
CCGCTAGTTCATGTACTAGATGAAAGTACCAACCGTTCATGCATTGCCAAGGACCGGCGA
TTGAGCATAACTATCACTGTTCTTAGGACATTTGCGGACTTGTTTTACATGCTGAACATC
ATGGTCAAGTTCCATACTGCATATGTAGATCCAAAGTCCAGAGTACTTGGGAAGGGAGAG
CTTGTCTTGGACTTAAAGAAGATTCAACGGAGATATCTCAGAACAGATTTCTTTATTGAC
CTACTTGCAACGATCCCTCTTCCTCAGGTTACCGTGTGGATTATTATGCCTTCAATAAAA
AACTCAGATTACAACATCCGGAACACCACATTTGCTCTGGTTATTATGATTCAGTATATA
TTCAGAATGTATCTCATTGTACCATTAAGCAATCAAATTATCAAAGCAGCTGGAGTAGTT
GCCAAGTCAGCCTGGCTAGGAGCAGCATACAATCTTCTGTACTACATGCTTGCAAGTCAT
ATTACTGGAGCAATATACTATCTTCTCTCCATTGAACGGCAAATTACATGTTGGAATCAG
CAGTGCCTAAATGAGTCTTGTAGTTTTAACTTCATAAGCTGTGACAATACTGGTTCTAGC
AGTTATCTTACTTGGGGAAAGAACACAAGTATATTTGACAATTGTGATCCCAATCGTAAT
TCAAGTGCTAACCCCCCACCATTTAATTATGGAATGTTTTCAACCGCACTGAGTAAAGGT
GCTGTTTCTGCTCCATTTCTTGAGAAGTACTTCTTTTGTCTGTGGTGGGGCTTGCTGCAG
CTTAGTTCTAGTGGAAATCCTCTTCAGACAAGTGCATACATCGCAGAGAACACATTTGCC
ATAGCAATTGGTGCTCTTAGTCTCGTACTCTTTGCTCAGCTGATTGGCAATATGCAGACA
TACTTGCAGTCCATCAGTAAAAGGCTTGAAGAGTGGAGGCTCCGGCAAAGAGATATGGAG
GAGTGGATGAGACATCATCAGCTCCCTGATGAACTTCAAGATCGTGTCCGGCGATTCGTT
CAGGTTAAATGGCTTGCAACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCT
GCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTGTCCCA
TTTTTCTCGGAGATGGATTACCAACTTCTAGACGCCATCTGCGAGCGTCTGGTGTCTTTC
CTGTGCCCTGAGCGCACATACATTTCTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTC
GTCATACGCGGTAAGCTAGAGAGCTCCACAACCAACGGAGGCCGCAGCAACTTCTTCAAC
TCCATCATCCTGCGCCCTGGTGATTTCGCTGGCGAGGAGCTGCTCACATGGGCTTTACTT
CCAAAGACCAATGTCCATTTCCCGCTTTCGACGAGGACAGTGCAGAGCCTTACAGAGGTT
GAGGCCTTTGCCCTGAGAGCCGAGGACCTCAAGTTCGTCGCGAACCAGTTCAGAAGACTA
CACAGCAAGAAGCTCCAGCACACGTTCCGGTTCTACTCCCACCATTGGAGGACATGGGCT
GCCTGCTTCATCCAGGCTGCTTGGCGGCAGCACCAGAGGAGAAAGCTGGCAGAGAGCCTG
AGCCGGTGGGAATCATACTCATGGTGGCCAGAAGAACATCCACCTGCTGACAAGCCTAAA
CAGGAGGGCACTTCAAGCAGTACCAAGACTATTGCTGAGAGTGCCATTGCTCAAATGCAC
AAGTTCGCCTCCGCTTCCAGAAGGTTCCGTGCCGACGATACCGCCATCCGGAGGCTGCAG
AAGCCTGATGAGCCTGACTTCTCTGCAGATCATTTCGATTGAGGCTGATGTTTCCTGCTT
TAAAAAAACTGTTGTAAAACCACTACTGTGCACTGCATTGTATTCAATAGCCATATAGTA
ATCCATGTGTATCTCAAAGATGAAACCAAACTGGTCCTTTGTGTAATTCAAATATACGCA
TTTTAGGAAAAAAAAAAAAA

consensusID : consensus_13641#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [AAAAGGCTTGAAGAGTGGAGGCTCCGGCAAAGAGATATGGAGGAGTGGATGAGACATCATCAGCTCCCTGATGAACTTCAAGATCGTGTCCGGCGATTCGTTCAGGTTAAATGGCTTGCAACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCTGCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTGTAAGTTGTGGTTATTTACTTACATTTCAACTGAATTAGTAGAATGTTTTAGTTTCTGAAAGGTTTTAGATGTTAAATTTTCTAGTGGCATTCTGTCGTTTGGATGGAAAAATCAGTGACAAAAGTACCACCAGTGCTACTTCATAGTCTAGCATGTTTTCTTATCCCTTCCTAAAATGCAGGTCCCATTTTTCTCNNNNNTGGATTACCNACTTCTNNNCGCCATCTGCGAGCG]

[+] EMBL CF196269             [AAAAGGCTTGAAGAGTGGAGGCTCCGGCAAAGAGATATGGAGGAGTGGATGAGACATCATCAGCTCCCTGATGAACTTCAAGATCGTGTCCGGCGATTCGTTCAGGTTAAATGGCTTGCAACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCTGCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTGTAAGTTGTGGTTATTTACTTACATTTCAACTGAATTAGTAGAATGTTTTAGTTTCTGAAAGGTTTTAGATGTTAAATTTTCTAGTGGCATTCTGTCGTTTGGATGGAAAAATCAGTGACAAAAGTACCACCAGTGCTACTTCATAGTCTAGCATGTTTTCTTATCCCTTCCTAAAATGCAGGTCCCATTTTTCTCNNNNNTGGATTACCNACTTCTNNNCGCCATCTGCGAGCG]




>consensus_13641#1
AAAAGGCTTGAAGAGTGGAGGCTCCGGCAAAGAGATATGGAGGAGTGGATGAGACATCAT
CAGCTCCCTGATGAACTTCAAGATCGTGTCCGGCGATTCGTTCAGGTTAAATGGCTTGCA
ACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCTGCTGATATACGCCGGGAT
GTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTGTAAGTTGTGGTTATTTACTTACA
TTTCAACTGAATTAGTAGAATGTTTTAGTTTCTGAAAGGTTTTAGATGTTAAATTTTCTA
GTGGCATTCTGTCGTTTGGATGGAAAAATCAGTGACAAAAGTACCACCAGTGCTACTTCA
TAGTCTAGCATGTTTTCTTATCCCTTCCTAAAATGCAGGTCCCATTTTTCTCNNNNNTGG
ATTACCNACTTCTNNNCGCCATCTGCGAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13641#0      AAGAAAAATTTCTGTGTCCGTTCCATCCTAGTCCTTGGCAAGTCTTCTCAAGCAGGAGGA 60
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      GGACTTGCCATGGTGTTGATTTGGGGCGGGAAGAAGCATCGGGCTCGCCGTCTGCTCCTC 120
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      TGATCGGCCTCCTCAGTTGACACAGCAAGATTTGGTCCGGGGGGAAGGGGAGCAGCCGCC 180
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      ATGTTTGGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGGATC 240
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      TTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCACGGGCTGACAGA 300
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      TTTGGGGTAAACAGGATAGATGCAAAGACTACTGAGAAGATTAAAGTGATAAGTGAAGGC 360
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      AACATACCATGGCACCGCCGCATTCTAGACCCTGGGAGTAGCATGGTGCTAATGTGGAAC 420
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      AGGGTGTTCCTAGGGTCCTGTTTGTTTGCTCTTTTCATTGATCCTTTCTTCTACTACCTG 480
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      CCGCTAGTTCATGTACTAGATGAAAGTACCAACCGTTCATGCATTGCCAAGGACCGGCGA 540
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      TTGAGCATAACTATCACTGTTCTTAGGACATTTGCGGACTTGTTTTACATGCTGAACATC 600
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      ATGGTCAAGTTCCATACTGCATATGTAGATCCAAAGTCCAGAGTACTTGGGAAGGGAGAG 660
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      CTTGTCTTGGACTTAAAGAAGATTCAACGGAGATATCTCAGAACAGATTTCTTTATTGAC 720
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      CTACTTGCAACGATCCCTCTTCCTCAGGTTACCGTGTGGATTATTATGCCTTCAATAAAA 780
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      AACTCAGATTACAACATCCGGAACACCACATTTGCTCTGGTTATTATGATTCAGTATATA 840
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      TTCAGAATGTATCTCATTGTACCATTAAGCAATCAAATTATCAAAGCAGCTGGAGTAGTT 900
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      GCCAAGTCAGCCTGGCTAGGAGCAGCATACAATCTTCTGTACTACATGCTTGCAAGTCAT 960
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      ATTACTGGAGCAATATACTATCTTCTCTCCATTGAACGGCAAATTACATGTTGGAATCAG 1020
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      CAGTGCCTAAATGAGTCTTGTAGTTTTAACTTCATAAGCTGTGACAATACTGGTTCTAGC 1080
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      AGTTATCTTACTTGGGGAAAGAACACAAGTATATTTGACAATTGTGATCCCAATCGTAAT 1140
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      TCAAGTGCTAACCCCCCACCATTTAATTATGGAATGTTTTCAACCGCACTGAGTAAAGGT 1200
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      GCTGTTTCTGCTCCATTTCTTGAGAAGTACTTCTTTTGTCTGTGGTGGGGCTTGCTGCAG 1260
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      CTTAGTTCTAGTGGAAATCCTCTTCAGACAAGTGCATACATCGCAGAGAACACATTTGCC 1320
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      ATAGCAATTGGTGCTCTTAGTCTCGTACTCTTTGCTCAGCTGATTGGCAATATGCAGACA 1380
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      TACTTGCAGTCCATCAGTAAAAGGCTTGAAGAGTGGAGGCTCCGGCAAAGAGATATGGAG 1440
consensus_13641#1      ------------------AAAAGGCTTGAAGAGTGGAGGCTCCGGCAAAGAGATATGGAG 42
                                         ******************************************

consensus_13641#0      GAGTGGATGAGACATCATCAGCTCCCTGATGAACTTCAAGATCGTGTCCGGCGATTCGTT 1500
consensus_13641#1      GAGTGGATGAGACATCATCAGCTCCCTGATGAACTTCAAGATCGTGTCCGGCGATTCGTT 102
                       ************************************************************

consensus_13641#0      CAGGTTAAATGGCTTGCAACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCT 1560
consensus_13641#1      CAGGTTAAATGGCTTGCAACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCT 162
                       ************************************************************

consensus_13641#0      GCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTGTCCCA 1620
consensus_13641#1      GCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTGT--AA 220
                       ********************************************************   *

consensus_13641#0      TTTTTCTCGGAGATGGATTACCAACTTCTAGACGCCATCTGCGAGCGTCTGGTGTCTTTC 1680
consensus_13641#1      GTTGT----------GGTTATTTACTT--ACATTTCAACTGAATTAGTAGAATGTTTTAG 268
                        ** *          * ***   ****  * *   ** ***     **    *** **  

consensus_13641#0      CTGTGCCCTGAGCGCACATACATTTCTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTC 1740
consensus_13641#1      TT----TCTGAAAGGTTTTAGATGT----------TAAATTTTCTAGTGGCATTCTGT-- 312
                        *     ****  *    ** ** *          * *   *   * **  ** ** *  

consensus_13641#0      GTCATACGCGGTAAGCTAGAGAGCTCCACAACCAACGGAGGCCGCAGCAACTTCTTCAAC 1800
consensus_13641#1      --------CGTTTGGATGGAAAAATCAGTGACAAAAGTA--------CCACCAGTGCTAC 356
                               ** *  * * ** *  **    ** ** * *        * **   * * **

consensus_13641#0      TCCATCATCCTGCGCCCTGGTGATTTCGCTGGCGAGGAGCTGCTCACATGGGCTTTACTT 1860
consensus_13641#1      TTCATAGTCTAGCATGTTTTCTTATCCCTTCCTAAAATGCAGGTCCCATT--TTTCTCNN 414
                       * ***  **  **    *      * *  *    *   ** * ** ***    **  *  

consensus_13641#0      CCAAAGACCAATGTCCATTTCCCGCTTTCGACGAGGACAGTGCAGAGCCTTACAGAGGTT 1920
consensus_13641#1      NNNTGGATTACCNACTTCTNNNCGCCATCTGCGAGCG----------------------- 451
                            **  *    *   *   ***  **  ****                         

consensus_13641#0      GAGGCCTTTGCCCTGAGAGCCGAGGACCTCAAGTTCGTCGCGAACCAGTTCAGAAGACTA 1980
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      CACAGCAAGAAGCTCCAGCACACGTTCCGGTTCTACTCCCACCATTGGAGGACATGGGCT 2040
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      GCCTGCTTCATCCAGGCTGCTTGGCGGCAGCACCAGAGGAGAAAGCTGGCAGAGAGCCTG 2100
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      AGCCGGTGGGAATCATACTCATGGTGGCCAGAAGAACATCCACCTGCTGACAAGCCTAAA 2160
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      CAGGAGGGCACTTCAAGCAGTACCAAGACTATTGCTGAGAGTGCCATTGCTCAAATGCAC 2220
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      AAGTTCGCCTCCGCTTCCAGAAGGTTCCGTGCCGACGATACCGCCATCCGGAGGCTGCAG 2280
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      AAGCCTGATGAGCCTGACTTCTCTGCAGATCATTTCGATTGAGGCTGATGTTTCCTGCTT 2340
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      TAAAAAAACTGTTGTAAAACCACTACTGTGCACTGCATTGTATTCAATAGCCATATAGTA 2400
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      ATCCATGTGTATCTCAAAGATGAAACCAAACTGGTCCTTTGTGTAATTCAAATATACGCA 2460
consensus_13641#1      ------------------------------------------------------------
                                                                                   

consensus_13641#0      TTTTAGGAAAAAAAAAAAAA 2480
consensus_13641#1      --------------------