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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1938 fasta sequence
[TTTTTTTTTTTTTTTTTTTGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACACATAGGNNAAAGAGGNTAACAGTGNGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTNGAAACTAGAATAGGATGAAANGGTGNAAATTTCTAACAGGNAAACGGGTTACTTTGACCTTAATANTGTAATTTCTCCCCAAAACGAATTNCAGAATACATACCTAGTCCTAGCTGAGNAATATAAAGCCGCGGCGATTTGACGCACCTCNATATGATGAATAATTTACACATGTATCAGCCTTAGATCGGTCATTCTTGATTCGCAGGTCTTTGGCCTGTATGTGCCGCTGCCAGAAGCCCCACTGGAGATTTTGACTTGACAGTAGCTCGGTAAGATACTTGCTACACAATGTGTTGCGTCTTCAGATTTCAGTAATGTATAAGCCGATAGTCACCTTGTCACAGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAGAGGAACCACTGAAAGACTCCCAAGGGAAATGCAACTAATGCGTTATCGCTCAGAAAGCTGTTAGATGATTTCTTCAAGATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGTGAGTGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAGGCCCATCCCATGGACGCAGCTTTCCTGACTTTGACAAACCCTCATGTATGGATATACCCTGACCAGACTCTAACTCTACTTGAC-AAATTGCACATATGAAGAGCTTGAACATAT-TCCGAACTGGATATTCAGAATCTAGCCGTCTTGAAAGGGAAGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCTTTAGGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAATGGTAAATGGTACCCTCAGCTTCAAGGACGCACCGCGAATCGCCAACGGATGCAACGGTCACAACGTACCCATCGATTATGACAAACGTCACGGTTGTTCCTGAAGAATGGGCTCTTGTTTGAAAATCCTTGTCCGTCTTGACGAACCCGGCCACCAGCGCCCTCGGGAGCGCTGCGAGCCACTCGTCGCCGCTCAGATCGGCAGGAACGCAGCACATGACGTTGCTGAGGATATTCTCCTTGGCGTACACCGCGGCGCCGCTCCCGTTGTGCCCATCGAACAGGGCGAAGGCGGAGAAGGGGGCGCCGCCGGCCGGGAGGCGCTNGCAGGCCGGCTTGAGCAGCGCGAAGTCCTCCCCCTTCTTAGCCCTACACGCCTGCCCCGCCGCGACGATGGGCCGCCGCTCCCGCTCCCGCCCGCCCGCACCCGCCGACGCCGACGCCGAAGCGCGCTCCGCCGACGCCTCACGCCGCAGCAGGTGCCCCGAGCGCCACGCTC]
[-] EMBL AU100744 [TTTTTTTTTTTTTTTTTTTGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACACATAGGNNAAAGAGGNTAACAGTGNGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTNGAAACTAGAATAGGATGAAANGGTGNAAATTTCTAACAGGNAAACGGGTTACTTTGACCTTAATANTGTAATTTCTCCCCAAAACGAATTNCAGAATACATACCTAGTCCTAGCTGAGNAATATAAAGCCGCGGCGATTTGACGCACCTCNAT ]
[+] EMBL CB624340 [ tccTTTTTTTTGCAATGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACACATAGGTTAAAGAGGATAACAGTGAGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTTGAAACTAGAATAGGATGAAATGGTGAAAATTTCTAACAGGAAAACGGGTTACTTTGACCTTAATAATGTAATTTCTCCCCAAAACGAATTTCAGAATACATACCTAGTCCTAGCTGAGAAATATAAAGCCGCGGCGATTTGACGCACCTCTATATGATGAATAATTTACACATGTATCAGCCTTAGATCGGTCATTCTTGATTCGCAGGTCTTTGGCCTGTATGTGCCGCTGCCAGAAGCCCCACTGGAGATTTTGACTTGACAGTAGCTCGGTAAGATACTTGCTACACAATGTGTTGCGTCTTCAGATTTCAGTAATGTATAAGCCGATAGTCACCTTGTCACAGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAGAGGAACCACTGAAAGACTCCCAAGGGAAATGCAACTAATGCGTTATCGCTCAGAAAGCTGTTAGATGATTTCTTCAAGATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGTGAGTGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAGGCCCATCCCATGGACGCAGCTTTCCTGACTTTGACAAACCCTCATGTATGGATATACCCTGACCAGACTCTAACTCTACTTGAC AAAT ]
[-] EMBL CB624339 [ TTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGTGAGTGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAGGCCCATCCCATGGACGCAGCTTTCCTGACTTTGACAAACCCTCATGTATGGATATACCCTGACCAGACTCTAACTCTACTTGAC AAATTGCACATATGAAGAGCTTGAACATAT TCCGAACTGGATATTCAGAATCTAGCCGTCTTGAAAGGGAAGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCTTTAGGTTAC ]
[-] EMBL C26578 [ agCTCTAACCCCACTTGACAAAATTGCACATATGAAGAGCTTGACCATATCCCCGAACTGGATATNCAGAACCTAGCCGTCTTGAAAGGGAAGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCT ]
[-] EMBL CB641854 [ TGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCATTCTGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAATGGTAAATGGTACCCTCAGCTTCAAGGACGCACCGCGAATCGCCAACGGATGCAACGGTCACAACGTACCCATCGATTATGACAAACGTCACGGTTGTTCCTGAAGAATGGGCTCTTGTTTGAAAATCCTTGTCCGTCTTGACGAACCCGGCCACCAGCGCCCTCGGGAGCGCTGCGAGCCACTCGTCGCCGCTCAGATCGGCAGGAACGCAGCACATGACGTTGCTGAGGATATTCTCCTTGGCGTACACCGCGGCGCCGCTCCCGTTGTGCCCATCGAACAGGGCGAAGGCGGAGAAGGGGGCGCCGCCGG ]
[-] EMBL AU183259 [ CCACCAGCGCCCTCGGGAGCGCTGCGAGCCACTCGTCGCCGCTCAGATCGGCAGGAACGCAGCACATGACGTTGCTGAGGATATTCTCCTTGGCGTACACCGCGGCGCCGCTCCCGTTGTGCCCATCGAACAGGGCGAAGGCGGAGAAGGGGGCGCCGCCGGCCGGGAGGCGCTNGCAGGCCGGCTTGAGCAGCGCGAAGTCCTCCCCCTTCTTAGCCCTACACGCCTGCCCCGCCGCGACGATGGGCCGCCGCTCCCGCTCCCGCCCGCCCGCACCCGCCGACGCCGACGCCGAAGCGCGCTCCGCCGACGCCTCACGCCGCAGCAGGTGCCCCGAGCGCCACGCTC]
consensusID : consensus_13652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 978 fasta sequence
[CCTCATGTATGGATATACCCTGACCAGACTCTAACTCTACTTGACAAATTGCACATATGAAGAGCTTGAACATATTCCGAACTGGATATTCAGAATCTAGCCTGAATTGGATGGCAGAAAAAAAAAGTCAAACGCGAGGCATTCTTATCCAAACTAGTGGATTTTCTGCACAATTTTGTGTGGAGCTAGATTTTAAATTTTGGATTGGATTTGGTATACAACTCTTAGCAATTTTTTTTCCATAAATACATTTGTATTTCATATACAATAGGCTTTAAACGTAGAATTGGATTCGGTATAGAAGTCTTGGCTTATATTTTACATAGATACAATTGTACTTTGTATATTGGTCAATCTACACTCTTATAATCTGAACCCTCCAGAGCAAACATGGTGCTTTCGTTTCGAGCTATCTTAACAGGATCAGCTATTTTAACTAGTTTCATGCTTCATGGCCTACTTACATACTAACACATAAGCAAATGACCTACTGTTAAAATGAAGTCCCCATCAGAAGAGGCTGAGTCTGTGACCAATCAAAATAGACACATACTTCTTCCACAATCAATCATGTAGATTCTAATTGCAATGCTACAAATAGAGTATAAGCTATTTCACAGATTGAAATGTGTTGAAAACTGGCAAGCTTGACAAAATGTTAGAATAGCCCCCATGTACTACCTTAAGAACAAATGTAACACCTAGAAAGTAGAGACCAGGCAATAGCAATACCTAACCTAAGCTATGACCAAAAAGGTTGGGCCCTGATGTTCCATGCTTCACCCTTCAATAGGAGTTGCAAAGAAATGAATAGGTAAGTAGTTGGAAACATGGAAAGTTTTTGCAGAATCTTCAAAGGGTGAAGCATAAAAAAATCTCTCGTAGAACTGCCTTCCAACTAAAATGGCATCTCACTCTCACAAATCTCATAAGACATCAATTCATCACACTTTTAATTGACTGTTGGCAATTACCACC]
[-] EMBL OS0210A [CCTCATGTATGGATATACCCTGACCAGACTCTAACTCTACTTGACAAATTGCACATATGAAGAGCTTGAACATATTCCGAACTGGATATTCAGAATCTAGCCTGAATTGGATGGCAGAAAAAAAAAGTCAAACGCGAGGCATTCTTATCCAAACTAGTGGATTTTCTGCACAATTTTGTGTGGAGCTAGATTTTAAATTTTGGATTGGATTTGGTATACAACTCTTAGCAATTTTTTTTCCATAAATACATTTGTATTTCATATACAATAGGCTTTAAACGTAGAATTGGATTCGGTATAGAAGTCTTGGC ]
[-] EMBL CB623012 [ GATTGGATTTGGTATACAACTCTTAGCAATTTTTTGTCCATAAATACATTTGTATTTCATATACAATAGGCTTTAAACGTAGAATTGGATTCGGTATAGAAGTCTTGGCTTATATTTTACATAGATACAATTGTACTTTGTATATTGGTCAATCTACACTCTTATAATCTGAACCCTCCAGAGCAAACATGGTGCTTTCGTTTCGAGCTATCTTAACAGGATCAGCTATTTTAACTAGTTTCATGCTTCATGGCCTACTTACATACTAACACATAAGCAAATGACCTACTGTTAAAATGAAGTCCCCATCAGAAGAGGCTGAGTCTGTGACCAATCAAAATAGACACATACTTCTTCCACAATCAATCATGTAGATTCTAATTGCAATGCTACAAATAGAGTATAAGCTATTTCACAGATTGAAATGTGTTGAAAACTGGCAAGCTTGACAAAATGTTAGAATAGCCCCCATGTACTACCTTAAGAACAAATGTAACACCTAGAAAGTAGAGACCAGGCAATAGCAATACCTAACCTAAGCTATGACCAAAAAGGTTGGGCCCTGATGTTCCATGCTTCACCCTTCAATAGGAGTTGCAAAGAAATGAATAGGTAAGTAGTTGGAAACATGGAAAGTTTTTGCAGAATCTTCAAAGGGTGAAGCATAAAAAAATCTCTCGTAGAACTGCCTTCCAACTAAAATGGCATCTCACTCTCACAAATCTCATAAGACATCAATTCATCACACTTTTAATTGACTGTTGGCAATTACCACC]
consensusID : consensus_13652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence
[AAAAACTTATTGATTGCACTGCTTAAAGCGTACTATTGCATCCATTGTCAAGATGNATAAAGGGTACAAAGTACAANCCGTCTTGAAAGGAANGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCCTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCGTTCTGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAATGGTAAATGGTACCCTCAGCTTCAAGGACGCACCGCGAATCGCCAACGGATGCAACGGTCGCAACGTACCCATCGATTATGACAAACGTCACGGTTGTTCCTGAAGAATGGGCTCTTG]
[-] EMBL CA765984 [AAAAACTTATTGATTGCACTGCTTAAAGCGTACTATTGCATCCATTGTCAAGATGNATAAAGGGTACAAAGTACAANCCGTCTTGAAAGGAANGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCCTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCGTTCTGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAATGGTAAATGGTACCCTCAGCTTCAAGGACGCACCGCGAATCGCCAACGGATGCAACGGTCGCAACGTACCCATCGATTATGACAAACGTCACGGTTGTTCCTGAAGAATGGGCTCTTG]
consensusID : consensus_13652#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 703 fasta sequence
[TTTTTTTTTTTTT--TAACTTCAAGCTTATTTACCCTTCACATAGGTTAAAAAGGATAACAGGGAGGATAGCTGTTTGCAAAAATCCCCTTGGATATAAGTACCCTGTTGAAACTAAAATAGGATGAAATGGGGAAAATTTCTAACAGGAAAACGGGTTACTTTGACCTTAATAATGTAATTTCCCCCCAAAACGAATTTCAAAATACATACCTAGCCCTACCTGAAAAATATAAAGCCGCGGCGATTTGACCCCCCTCTATATGATGAATAATTTACACTTGTATCAGCCTTAAATCGGTCATTCTTGATTCCCAGGTCTTTGGCCTGTATGTGCCCCTGCCAAAACCCCCACTGGAAATTTTGACTTGACAGTACCTCGGTAAAATACTTGCTACACAATGGGTTGCGTCTTCAAATTTCAGTAATGTATAAGCCGATAGTCCCCTTGTCACAGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAAAGGAACCACTGAAAAACTCCCAAGGGAAATGCAACTAATGCGTTATCCCTCAAAAAGCTGTTAAATGATTTCTTCAAAATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGGGAGGGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAGGCCC]
[+] EMBL CB623013 [TTTTTTTTTTTTT TAACTTCAAGCTTATTTACCCTTCACATAGGTTAAAAAGGATAACAGGGAGGATAGCTGTTTGCAAAAATCCCCTTGGATATAAGTACCCTGTTGAAACTAAAATAGGATGAAATGGGGAAAATTTCTAACAGGAAAACGGGTTACTTTGACCTTAATAATGTAATTTCCCCCCAAAACGAATTTCAAAATACATACCTAGCCCTACCTGAAAAATATAAAGCCGCGGCGATTTGACCCCCCTCTATATGATGAATAATTTACACTTGTATCAGCCTTAAATCGGTCATTCTTGATTCCCAGGTCTTTGGCCTGTATGTGCCCCTGCCAAAACCCCCACTGGAAATTTTGACTTGACAGTACCTCGGTAAAATACTTGCTACACAATGGGTTGCGTCTTCAAATTTCAGTAATGTATAAGCCGATAGTCCCCTTGTCACAGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAAAGGAACCACTGAAAAACTCCCAAGGGAAATGCAACTAATGCGTTATCCCTCAAAAAGCTGTTAAATGATTTCTTCAAAATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGGGAGGGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAGGCCC]
[+] EMBL CA760626 [TTTTTTTTTTTTTCCTAACTTCAAGCTTATTTACATTACACATAGGTTAAAGAGGATAACAGTGAGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTTGAAACTAGAATAGGATGAAATGGTGAAAATTTCTAACAGGAAAACGGGTTACTTTGACCTTAATAATGTAATTTCTCCCCAAAACGAATTTCAAAATACATACCTAGTCCTAGCTGAAAAATATAAAGCCGCGGCGATTTGACGCACCTCTATATGATGAATAATTTACACATGTATCAGCCTTAGATCGGTCATTCTTGATTCGCAGGTCTTTGGCCTGTATGTGCCGCTGCCAAAAGCCCCACTGGAGATTTTGACTTGACAGTAGCTCGGTAAGATACTTGCTACACAATGTGTTGCGTCTTCAGATTTCAGTAATGTATAAGCCGATAGTCACCTTGTCACAGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAGAGGAACCACTGAAAGACTCCCAAGGGAAATGCAACTAATGCGTTATCGCTCAGAAAGCTGTTAGATGATTTCTTCAAGATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGTGAGTGACGTTCTCCTTCCATTGCTTCT ]
consensusID : consensus_13652#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[AAAGGGTACAAAGTACAAACCGTCTTGAAAGGGAAGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCATTCTGTTACACGTCCAACCCTACCAACCATAACCAGTAAGCGGTAGGAACCAACCACATATATGACAAAGAACAACAAAACATCGTGTGAGTAAACAATCTTACTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAA]
[-] EMBL BF430813 [AAAGGGTACAAAGTACAAACCGTCTTGAAAGGGAAGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCATTCTGTTACACGTCCAACCCTACCAACCATAACCAGTAAGCGGTAGGAACCAACCACATATATGACAAAGAACAACAAAACATCGTGTGAGTAAACAATCTTACTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAA]
consensusID : consensus_13652#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence
[TTTAATTGAGAAGTGAAATCAGCATCAGGTGCAATGTGCAATGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACACATAGGTTAAAGAGGATAACAGTGAGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTTGAAACTAGAATAGGATGAAATGGTGAAAATTTCTAAC]
[+] EMBL CF324972 [TTTAATTGAGAAGTGAAATCAGCATCAGGTGCAATGTGCAATGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACACATAGGTTAAAGAGGATAACAGTGAGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTTGAAACTAGAATAGGATGAAATGGTGAAAATTTCTAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 TTTTTTTTTTTTTTTTTTTGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACAC 60
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 ATAGGNNAAAGAGGNTAACAGTGNGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGT 120
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 ACACTGTNGAAACTAGAATAGGATGAAANGGTGNAAATTTCTAACAGGNAAACGGGTTAC 180
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 TTTGACCTTAATANTGTAATTTCTCCCCAAAACGAATTNCAGAATACATACCTAGTCCTA 240
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 GCTGAGNAATATAAAGCCGCGGCGATTTGACGCACCTCNATATGATGAATAATTTACACA 300
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 TGTATCAGCCTTAGATCGGTCATTCTTGATTCGCAGGTCTTTGGCCTGTATGTGCCGCTG 360
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 CCAGAAGCCCCACTGGAGATTTTGACTTGACAGTAGCTCGGTAAGATACTTGCTACACAA 420
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 TGTGTTGCGTCTTCAGATTTCAGTAATGTATAAGCCGATAGTCACCTTGTCACAGCTGTA 480
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 CCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAGAGGAACCACTGAAA 540
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 GACTCCCAAGGGAAATGCAACTAATGCGTTATCGCTCAGAAAGCTGTTAGATGATTTCTT 600
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 CAAGATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTC 660
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------CCTCATGTATGGATATACCCTGACCAGACTCTAACT 36
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 GTGAGTGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAG 720
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 CTACTTGACAAATTGCACATATGAAGAGCTTGAACATATTCCGAACTGGATATTCAGAAT 96
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 GCCCATCCCATGGACGCAGCTTTCCTGACTTTGACAAACCCTCATGTATGGATATACCCT 780
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 CTAGCCTGAATTGGATGGCAGAAAAAAAAAGTCAAACGCGAGGCATTCTTATCCAAACTA 156
consensus_13652#2 AAAAACTTATTGATTGCACTGCTTAAAGCGTACTATTGCATCCATTGTCAAGATGNATAA 60
consensus_13652#4 ----------------------------------------------------------AA 2
consensus_13652#0 GACCAGACTCTAACTCTACTTGACAAATTGCACATATGAAGAGCTTGAACATATTCCGAA 840
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 -----------------------------TTTAATTGAGAAGTGAAATCAGCATCAGGTG 31
consensus_13652#1 GTGGATTTTCTGCACAATTTTGTGTGGAGCTAGATTTTAAATTTTGGATTGGATTTGGTA 216
consensus_13652#2 A-GGGTACAAAGTA-CAANCCGTCTTGAAAGGAANGGACATCCATCCT-CAA-AGACTTC 116
consensus_13652#4 A-GGGTACAAAGTA-CAAACCGTCTTGAAAGGGAAGGACATCCATCCT-CAA-AGACTTC 58
consensus_13652#0 CTGGATATTCAGAATCTAGCCGTCTTGAAAGGGAAGGACATCCATCCT-CAA-AGACTTC 898
consensus_13652#3 -------------TTTTTTTTTTTTTTAACTTCAAGCTTATTTACCCTTCAC-ATAGGTT 46
consensus_13652#5 CAATGTGCAATGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACAC-ATAGGTT 90
consensus_13652#1 TACAACTCTTAGCAATTTTTTTTCCATAAATACATTTGTATTTCATATACAATAGGCTTT 276
* ** * ** * ** * *
consensus_13652#2 CTCCACCAAATCTGGCTGGGTA------CATTGGTCCTTATCT-GCATG-ACATGGTGAG 168
consensus_13652#4 CTCCACCAAATCTGGCTGGGTA------CATTGGTCCTTATCT-GCATG-ACATGGTGAG 110
consensus_13652#0 CTCCACCAAATCTGGCTGGGTA------CATTGGTCCTTATCT-GCATG-ACATGGTGAG 950
consensus_13652#3 AAAAAGGATAACAGGGAGGATAGC----TGTTTGCAAAAATCC-CCTTGGATATAAGTAC 101
consensus_13652#5 AAAGAGGATAACAGTGAGGATAGC----TGTTTGCAAGAATCT-CCTTGGATATAAGTAC 145
consensus_13652#1 AAACGTAGAATTGGATTCGGTATAGAAGTCTTGGCTTATATTTTACATAGATACAATTGT 336
* * * ** ** * ** * * * *
consensus_13652#2 TCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCA 228
consensus_13652#4 TCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCA 170
consensus_13652#0 TCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCA 1010
consensus_13652#3 CCTGTTGAAACTAAA--ATAGGATGAAATGGGGAAAATTTCTAACAGGAAAACGGGTTAC 159
consensus_13652#5 ACTGTTGAAACTAGA--ATAGGATGAAATGGTGAAAATTTCTAAC--------------- 188
consensus_13652#1 ACTTTGTATATTGGT---CAATCTACACTCTTATAATCTGAACCCTCCAGAGCAAACATG 393
** * * * * ** * *
consensus_13652#2 GGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGA-CAATACAAGTCCT 287
consensus_13652#4 GGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGA-CAATACAAGTCGT 229
consensus_13652#0 GGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGA-CAATACAAGTCGT 1069
consensus_13652#3 TTTGACCTTAATAATGTAATTTCCCCCCAAAACGAATTTCAAAATA-CATACCTAGCCCT 218
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 GTGCTTTCGTTTCGAGCTATCTTAACAGGATCAGCTATTTTAACTAGTTTCATGCTTCAT 453
consensus_13652#2 ATCATCTCTCAATCCTTTTG---ATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGC 344
consensus_13652#4 ATCATCTCTCAATCCTTTTG---ATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGC 286
consensus_13652#0 ATCATCTCTCAATCCTTTTG---ATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGC 1126
consensus_13652#3 ACCTGAAAAATATAAAGCCG---CGGCGATTTGACCCCCCTCTATATGATGAATAATTTA 275
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 GGCCTACTTACATACTAACACATAAGCAAATGACCTACTGTTAAAATGAAGTCCCCATCA 513
consensus_13652#2 TTCTGGAGGAAGCCCT----CGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCC 400
consensus_13652#4 TTCTGGAGGAAGCCCT----CGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCC 342
consensus_13652#0 TTCTGGAGGAAGCCCT----CGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCC 1182
consensus_13652#3 CACTTGTATCAGCCTTAAATCGGTCATTCTTGATTCCCAGGTCTTTGGCCTGTATGTGCC 335
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 GAAGAGGCTGAGTCTGTGACCAATCAAAATAGACACATACTTCTTCCA-CAATCAATCAT 572
consensus_13652#2 AAACACCATCACTTGAA--ATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTT 458
consensus_13652#4 AAACACCATCACTTGAA--ATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTT 400
consensus_13652#0 AAACACCATCACTTGAA--ATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTT 1240
consensus_13652#3 CC-TGCCAAAACCCCCA--CTGGAAATTTTGACTTGACAGTACCTCGGTAAAATACTTGC 392
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 GTAGATTCTAATTGCAATGCTACAAATAGAGTATAAGCTATTTCACAGATTGAAATGTGT 632
consensus_13652#2 CACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAG 518
consensus_13652#4 CACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAG 460
consensus_13652#0 CACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAG 1300
consensus_13652#3 TACACAATGGGTTGCGTCTTCAAATTTCAGTAATGTATAAGCCGATAGTCCCCTTGTCAC 452
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 TGAAAACTGGCAAGCTTGACAAAATGTTAGAATAGCCC--CCATGTACTACCTTAAGAAC 690
consensus_13652#2 GCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAG 578
consensus_13652#4 GCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAG 520
consensus_13652#0 GCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAG 1360
consensus_13652#3 AGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAAAGGAACC 512
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 AAATGTAACACCTAG--AAAGTAGAGACCAGGCAATAGCAATACCTAACCTAAGCTATGA 748
consensus_13652#2 CCTTCCAACTTCACCTCCGCGTTCTGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAA 638
consensus_13652#4 CCTTCCAACTTCACCTCCGCATTCTGTTACACGTCCAACCCTACC--------------A 566
consensus_13652#0 CCTTCCAACTTCACCTCCGCTTTAGGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAA 1420
consensus_13652#3 ACTGAAAAACTCCCAAGGGAAATGCAACTAATGCGTTATCCCTCA---AAAAGCTGTTAA 569
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 CCAAAAAGGTTGGGCCCTGA----TGTTCCATGCTTCACCCTTCAAT-AGGAGTTGCAAA 803
consensus_13652#2 GCGATGGTCAGCGGACAAATGG------TAAATGGTACCCTCAGCTTCAAGGACGCACCG 692
consensus_13652#4 ACCATAACCAGT----AAGCGG------TAGGAACCAACCACATATATGACAAAGAACAA 616
consensus_13652#0 GCGATGGTCAGCGGACAAATGG------TAAATGGTACCCTCAGCTTCAAGGACGCACCG 1474
consensus_13652#3 ATGATTTCTTCAAAATGACTCC------AACTTGGCTACTATTCACTTGACCCACTGTTT 623
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 GAAATGAATAGGTAAGTAGTTGGAAACATGGAAAGTTTTTGCAGAATCTTCAAAGGGTGA 863
consensus_13652#2 CGAATCGCCAACGGATGCAACGGTCGCAACGTACCCATCGATTATGACAAACGTCACGGT 752
consensus_13652#4 CAAAACATCGTGTGAGTAAACAATCTTAC--TCCTCTTCGCTAGCATCGAA----GCGAT 670
consensus_13652#0 CGAATCGCCAACGGATGCAACGGTCACAACGTACCCATCGATTATGACAAACGTCACGGT 1534
consensus_13652#3 CTTGAGGAGGAATCTCGGGAGGGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAA 683
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 AGCATAAAAAAATCTCTCGTAGAACTGCCTTCCAACTAAAATGGCATCTCACTCTCACAA 923
consensus_13652#2 TGTTCCTGAAGAATGGGCTCTTG------------------------------------- 775
consensus_13652#4 GGTCAGCGGACAAA---------------------------------------------- 684
consensus_13652#0 TGTTCCTGAAGAATGGGCTCTTGTTTGAAAATCCTTGTCCGTCTTGACGAACCCGGCCAC 1594
consensus_13652#3 CTGTGGCAAAGGAAAGGCCC---------------------------------------- 703
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ATCTCATAAGACATCAATTCATCACACTTTTAATTGACTGTTGGCAATTACCACC----- 978
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 CAGCGCCCTCGGGAGCGCTGCGAGCCACTCGTCGCCGCTCAGATCGGCAGGAACGCAGCA 1654
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 CATGACGTTGCTGAGGATATTCTCCTTGGCGTACACCGCGGCGCCGCTCCCGTTGTGCCC 1714
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 ATCGAACAGGGCGAAGGCGGAGAAGGGGGCGCCGCCGGCCGGGAGGCGCTNGCAGGCCGG 1774
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 CTTGAGCAGCGCGAAGTCCTCCCCCTTCTTAGCCCTACACGCCTGCCCCGCCGCGACGAT 1834
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 ------------------------------------------------------------
consensus_13652#4 ------------------------------------------------------------
consensus_13652#0 GGGCCGCCGCTCCCGCTCCCGCCCGCCCGCACCCGCCGACGCCGACGCCGAAGCGCGCTC 1894
consensus_13652#3 ------------------------------------------------------------
consensus_13652#5 ------------------------------------------------------------
consensus_13652#1 ------------------------------------------------------------
consensus_13652#2 --------------------------------------------
consensus_13652#4 --------------------------------------------
consensus_13652#0 CGCCGACGCCTCACGCCGCAGCAGGTGCCCCGAGCGCCACGCTC 1938
consensus_13652#3 --------------------------------------------
consensus_13652#5 --------------------------------------------
consensus_13652#1 --------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||