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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1407 fasta sequence
[ATCACCAGCACACACACTGTCACACACAAAGAAAGAAAAGGAGCTAGCAATGGCAGCACTCGCCGCCGTCGCCGTTCTCGTCGTCGCCATGGTTATCAGTGGCGGTGGCGGCGTCGCCGCGGCGGTGACATCCAAGAAGCCAGTGATCTACATCTTCGGCGACTCGATGTCCGACGTCGGGAACAACAACTACCTCATCCTCTCGCTCGCGAAGTCCGATTACCCCTGGTACGGCGTCGACTACGAGACCGGATTCCCCACCGGGCGGTTCACCAATGGCAGGACCATCGGGGACATCATGGCCGCCAAGTTTGGCGTCCCGCCGCCGCCGCCGTTCCTGTCGTTGTACATGACCGACGACGAGGTGCTCGGCGGCGTCAACTTCGCGTCCGGCGGCGCCGGCCTCCTCAACGAGACCGGCATTTACTTCGTTCAGTACCTGTCGTTCGACAACCAGATATCGTCGTTCGAGGAGATCAAGAACGCCATGATCGCCAAGATTGGCAAGAAGGCCGCAGAGGAGGTAGTCAATGGCGCCATCTTCCAAGTCGGCCTTGGGAGCAACGACTACATCAACAACTTCTTGCGGCCGTTCATGGCGGACGGCATCGTGTACACCCACGAAGAGTTCATCGGCCTCCTCATGGACACCATGGACAGGCAGCTCACAAGGCTGTACGATCTCGGGGCGCGCAACGTGTGGTTCAGCGGGCTCGCCCCGCTCGGCTGCATCCCGTCGCAGCGCGTCCTCTCCGACGACGGCGGGTGCCTGGACGACGTGAACGCGTACGCGGTGCAGTTCAACGCCGCCGCCAGGAACCTCCTCGAGCGGCTCAACGCGAAGCTCCCCGGCGCGAGCATGTCCCTCGCCGACTGCTACTCCGTCGTCATGGAGCTCATCGAGCACCCGCAGAAGTACGGGTTCAAGACGTCGCACACGTCGTGCTGCGACGTGGACACGACGGTGGGCGGGCTGTGCCTGCCGACGGCGCAGCTCTGCGACGACCGCACGGCGTTCGTGTTCTGGGACGCCTACCACACCTCCGACGCTGCCAACCAGGTCATCGCCGACCGCCTCTACGCCGACATGGTGAGCGCCGGCGCCGTACAGGGGAACGGGAACGCCACCACCGCCGCCGCCGCCTCCACCCCCGCGCCTCGCGTCGTCGTGGGCGGCGGCGCGTCGCCGTCGACCCACGCCGCGCCGCCTCCAAAGCCTTAGACGTGCAGACAACAGATCGATCGGCCGCCGTTGCGCCGGCACAACGCCGTCGCCTTTTCGTGTGATTCGAGCCCCAGTCATATCTGATCTCCATTGTCGGATGAGTTAAACAACAAGTGTTTGATGAAATGATGAGTAGTGTCGCGATTGTTCAACCAACGTTTTCCGAGTCAAAATCATGCATG]
[+] EMBL AK108686 [ATCACCAGCACACACACTGTCACACACAAAGAAAGAAAAGGAGCTAGCAATGGCAGCACTCGCCGCCGTCGCCGTTCTCGTCGTCGCCATGGTTATCAGTGGCGGTGGCGGCGTCGCCGCGGCGGTGACATCCAAGAAGCCAGTGATCTACATCTTCGGCGACTCGATGTCCGACGTCGGGAACAACAACTACCTCATCCTCTCGCTCGCGAAGTCCGATTACCCCTGGTACGGCGTCGACTACGAGACCGGATTCCCCACCGGGCGGTTCACCAATGGCAGGACCATCGGGGACATCATGGCCGCCAAGTTTGGCGTCCCGCCGCCGCCGCCGTTCCTGTCGTTGTACATGACCGACGACGAGGTGCTCGGCGGCGTCAACTTCGCGTCCGGCGGCGCCGGCCTCCTCAACGAGACCGGCATTTACTTCGTTCAGTACCTGTCGTTCGACAACCAGATATCGTCGTTCGAGGAGATCAAGAACGCCATGATCGCCAAGATTGGCAAGAAGGCCGCAGAGGAGGTAGTCAATGGCGCCATCTTCCAAGTCGGCCTTGGGAGCAACGACTACATCAACAACTTCTTGCGGCCGTTCATGGCGGACGGCATCGTGTACACCCACGAAGAGTTCATCGGCCTCCTCATGGACACCATGGACAGGCAGCTCACAAGGCTGTACGATCTCGGGGCGCGCAACGTGTGGTTCAGCGGGCTCGCCCCGCTCGGCTGCATCCCGTCGCAGCGCGTCCTCTCCGACGACGGCGGGTGCCTGGACGACGTGAACGCGTACGCGGTGCAGTTCAACGCCGCCGCCAGGAACCTCCTCGAGCGGCTCAACGCGAAGCTCCCCGGCGCGAGCATGTCCCTCGCCGACTGCTACTCCGTCGTCATGGAGCTCATCGAGCACCCGCAGAAGTACGGGTTCAAGACGTCGCACACGTCGTGCTGCGACGTGGACACGACGGTGGGCGGGCTGTGCCTGCCGACGGCGCAGCTCTGCGACGACCGCACGGCGTTCGTGTTCTGGGACGCCTACCACACCTCCGACGCTGCCAACCAGGTCATCGCCGACCGCCTCTACGCCGACATGGTGAGCGCCGGCGCCGTACAGGGGAACGGGAACGCCACCACCGCCGCCGCCGCCTCCACCCCCGCGCCTCGCGTCGTCGTGGGCGGCGGCGCGTCGCCGTCGACCCACGCCGCGCCGCCTCCAAAGCCTTAGACGTGCAGACAACAGATCGATCGGCCGCCGTTGCGCCGGCACAACGCCGTCGCCTTTTCGTGTGATTCGAGCCCCAGTCATATCTGATCTCCATTGTCGGATGAGTTAAACAACAAGTGTTTGATGAAATGATGAGTAGTGTCGCGATTGTTCAACCAACGTTTTCCGAGTCAAAATCATGCATG]
consensusID : consensus_1369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[GAAGAACTTCTTGCACTTTGCCATGTACTGACTTGACCTCACCACCGTGACTCACATGCAAGCTAGCTAATAGAAAATAAAATGCTGAGCACAAAGACTTAATCCAACATCGCACACGTCGTGTTGTGACGTGGACACGACGGTGGGCGGGCTGTGCCTGCCGATGGCGCAGCTCTGCGACGACCGCACGACGTTCGTGTTCTGGGACGCCTACCACACCTCCGACGCCACCAACCAGGTCATCGCCGACCGCCTCTACGCCGACATGGTGAGCGCTGGCGCGGTGCAGGGGAACGGGAACGTCACCACCGCCTCCAAAGCCTTGAAGTACAGACAACAGATCAATCGGCCGCTGTGCGCCGGCACAACGCCGTCGCCTATTCGGTACGACGGCGACGAGTAGGAGCGTGGCTGCGTGGTCTGGGCATGGACGTCCGAGGAGAGGAATTGGCGTCGCCGCCCCACCCGCAGCAGCCGCGTCGTCGGTTGATGAGGAGGAGGTCGGAGAGCACCTTCCGTCTCCGCCTCCACCACCGGCTGCCCGGGCGAACTCCGCCTCCCGCTACTGGCCGCCCGCCGCCCTCCGCCGCTCCCGTCCTCGCGAGGCGGCGCCATGCCGGTGAGGAGA]
[-] EMBL AK062747 [GAAGAACTTCTTGCACTTTGCCATGTACTGACTTGACCTCACCACCGTGACTCACATGCAAGCTAGCTAATAGAAAATAAAATGCTGAGCACAAAGACTTAATCCAACATCGCACACGTCGTGTTGTGACGTGGACACGACGGTGGGCGGGCTGTGCCTGCCGATGGCGCAGCTCTGCGACGACCGCACGACGTTCGTGTTCTGGGACGCCTACCACACCTCCGACGCCACCAACCAGGTCATCGCCGACCGCCTCTACGCCGACATGGTGAGCGCTGGCGCGGTGCAGGGGAACGGGAACGTCACCACCGCCTCCAAAGCCTTGAAGTACAGACAACAGATCAATCGGCCGCTGTGCGCCGGCACAACGCCGTCGCCTATTCGGTACGACGGCGACGAGTAGGAGCGTGGCTGCGTGGTCTGGGCATGGACGTCCGAGGAGAGGAATTGGCGTCGCCGCCCCACCCGCAGCAGCCGCGTCGTCGGTTGATGAGGAGGAGGTCGGAGAGCACCTTCCGTCTCCGCCTCCACCACCGGCTGCCCGGGCGAACTCCGCCTCCCGCTACTGGCCGCCCGCCGCCCTCCGCCGCTCCCGTCCTCGCGAGGCGGCGCCATGCCGGTGAGGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1369#0 ATCACCAGCACACACACTGTCACACACAAAGAAAGAAAAGGAGCTAGCAATGGCAGCACT 60
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 CGCCGCCGTCGCCGTTCTCGTCGTCGCCATGGTTATCAGTGGCGGTGGCGGCGTCGCCGC 120
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 GGCGGTGACATCCAAGAAGCCAGTGATCTACATCTTCGGCGACTCGATGTCCGACGTCGG 180
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 GAACAACAACTACCTCATCCTCTCGCTCGCGAAGTCCGATTACCCCTGGTACGGCGTCGA 240
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 CTACGAGACCGGATTCCCCACCGGGCGGTTCACCAATGGCAGGACCATCGGGGACATCAT 300
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 GGCCGCCAAGTTTGGCGTCCCGCCGCCGCCGCCGTTCCTGTCGTTGTACATGACCGACGA 360
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 CGAGGTGCTCGGCGGCGTCAACTTCGCGTCCGGCGGCGCCGGCCTCCTCAACGAGACCGG 420
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 CATTTACTTCGTTCAGTACCTGTCGTTCGACAACCAGATATCGTCGTTCGAGGAGATCAA 480
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 GAACGCCATGATCGCCAAGATTGGCAAGAAGGCCGCAGAGGAGGTAGTCAATGGCGCCAT 540
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 CTTCCAAGTCGGCCTTGGGAGCAACGACTACATCAACAACTTCTTGCGGCCGTTCATGGC 600
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 GGACGGCATCGTGTACACCCACGAAGAGTTCATCGGCCTCCTCATGGACACCATGGACAG 660
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 GCAGCTCACAAGGCTGTACGATCTCGGGGCGCGCAACGTGTGGTTCAGCGGGCTCGCCCC 720
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 GCTCGGCTGCATCCCGTCGCAGCGCGTCCTCTCCGACGACGGCGGGTGCCTGGACGACGT 780
consensus_1369#1 ------------------------------------------------------------
consensus_1369#0 GAACGCGTACGCGGTGCAGTTCAACGCCGCCGCCAGGAACCTCCTCGAGCGGCTCAACGC 840
consensus_1369#1 ---------------------------------GAAGAACTTCTT---GCACTTTGCCAT 24
* **** ** * ** * *
consensus_1369#0 GAAGCTCCCCGGCGCGAGCAT-GTCCCTCGCCGACT-GCTACTCCGTCGTCATGGAGCTC 898
consensus_1369#1 GTACTGACTTGACCTCACCACCGTGACTCACATGCAAGCTAGCTAATAGAAAATAAAAT- 83
* * * * * * ** ** *** * * **** * * * * *
consensus_1369#0 ATCGAGCACCCGCAGAAGTACGGGTTCAAGACGTCGCACACGTCGTGCTGCGACGTGGAC 958
consensus_1369#1 GCTGAGCAC-----AAAGACTTAATCCA--ACATCGCACACGTCGTGTTGTGACGTGGAC 136
****** *** * ** ** ************** ** *********
consensus_1369#0 ACGACGGTGGGCGGGCTGTGCCTGCCGACGGCGCAGCTCTGCGACGACCGCACGGCGTTC 1018
consensus_1369#1 ACGACGGTGGGCGGGCTGTGCCTGCCGATGGCGCAGCTCTGCGACGACCGCACGACGTTC 196
**************************** ************************* *****
consensus_1369#0 GTGTTCTGGGACGCCTACCACACCTCCGACGCTGCCAACCAGGTCATCGCCGACCGCCTC 1078
consensus_1369#1 GTGTTCTGGGACGCCTACCACACCTCCGACGCCACCAACCAGGTCATCGCCGACCGCCTC 256
******************************** **************************
consensus_1369#0 TACGCCGACATGGTGAGCGCCGGCGCCGTACAGGGGAACGGGAACGCCACCACCGCCGCC 1138
consensus_1369#1 TACGCCGACATGGTGAGCGCTGGCGCGGTGCAGGGGAACGGGAACGTCACCACCGCCTCC 316
******************** ***** ** **************** ********** **
consensus_1369#0 GCCGCCTCCACCCCCGCGCCTCGCGTCG-TCG-----TGGGCGGCGGCGCGTCGCCGTCG 1192
consensus_1369#1 AAAGCCTTGAAGTACAGACAACAGATCAATCGGCCGCTGTGCGCCGGCACAACGCCGTCG 376
**** * * * * ** *** ** *** **** * ********
consensus_1369#0 ACC-CACGCCGCGCCGCCTCCAAA-----------------GCCTTAGACGTGCAGAC-- 1232
consensus_1369#1 CCTATTCGGTACGACGGCGACGAGTAGGAGCGTGGCTGCGTGGTCTGGGCATGGACGTCC 436
* ** ** ** * * * * * * * ** *
consensus_1369#0 -AACAGATCGATCGGC--CGCCGTTGCGCCGGCA-CAACGCCGTCGCCTTTTCGTGTGAT 1288
consensus_1369#1 GAGGAGAGGAATTGGCGTCGCCGCCCCACCCGCAGCAGCCGCGTCGTCGGTTGATGAGGA 496
* *** ** *** ***** * ** *** ** * ***** * ** ** *
consensus_1369#0 TCGAGCCCCAGT-CATATCTGATCTCCATTGTCGG-ATGAGTTAAACAA-CAAGTGTTTG 1345
consensus_1369#1 GGAGGTCGGAGAGCACCTTCCGTCTCCGCCTCCACCACCGGCTGCCCGGGCGAACTCCGC 556
* * ** ** * ***** * * * * * * *
consensus_1369#0 ATGAAATGATGAGTAGTGTCGCGATTGTTCA--ACCAACGTTTTC-CGAGTCAAAATCAT 1402
consensus_1369#1 CTCCCGCTACTGGCCGC-CCGCCGCCCTCCGCCGCTCCCGTCCTCGCGAGGCGGCGCCAT 615
* * * * *** * * * *** ** **** * ***
consensus_1369#0 GCATG-------- 1407
consensus_1369#1 GCCGGTGAGGAGA 628
** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||