These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2041 fasta sequence [CCACCCGTGAAGCTCTGGAGTCGAGCGTGAACTTGGTCCACTACGCCATGGCGGCCGCACCACAGCAATCCGTGCACCCAAGCTTGCCCTCCTCAACCTCAACCCTCCGCCTCCTCATCTCCTCCTCCCCACGACGGCCTCCTCCGCCGCCGCCAAGAGCCCGCCGGTATAACAGGCTCGCGGCGTCGGCTTCGGCGGCGCGGGAGATGCCGTGGCCGCACGTGCTGACGGTGGCCGGCTCCGACTCCGGCGGCGGCGCCGGCATCCAGGCCGACATCAAGGCCTGCGCCGCGCTGGGAGCCTACTGCTCCTCCGTCGTCACCGCCGTCACTGCCCAGAACACCGCCGGCGTCCAGGGGATTCATGTGGTGCCAGAGGAGTTCATCCGGGAGCAGCTCAACTCGGTTCTTTCGGACATGTCGGTGGATGTGGTCAAGACAGGAATGCTCCCTTCAATCGGAGTAGTCAGAGTTTTATGTGAAAGTCTAAAGAAGTTTCCAGTCAAAGGCAGCTTTAGTGGTGGATCCAGTTATGGTGTCCACAAGTGGAGATACTCTTTCAGAATCATCTACTCTCTCTGTATATAGGGATGAATTATTTGCTATGGCTGATATAGTCACCCCAAATGTGAAAGAAGCGTCGAGATTACTTGGGGGTGTATCTTTGCGCACTGTTTCTGACATGCGCAATGCAGCGGAGTCCATTTACAAATTTGGTCCAAAACATGTACTTGTGAAAGGTGGGGATATGCTAGAATCCTCAGATGCAACTGATGTATTTTTTGATGGTAAGGAGTTCATTGAGCTCCATGCGCATCGCATAAAGACCCATAACACACATGGAACTGGTTGCACTTTAGCTTCATGTATAGCTTCCGAATTAGCGAAAGGTGCAACGATGCTGCATGCTGTTCAGGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTCGTTGGAAATGGACCTCAAGGCCCTTTTGATCACCTTTTCAAGCTCAAGTGTCCGCCATACAATGTTGGCTCACAGCCAAGCTTTAAGCCAGACCAACTCTTCCTGTATGCAGTGACAGACTCTGGGATGAACAAAAAGT-GGGGTCGTTCAATCAAAGAAGCTGTGCAAGCTGCCATTGAAGGTGGCGCTACCATTGTACAACTGAGAGAAAAAGATTCCGAAACAAGAGAGTTTTTGGAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATCAACGACCGGGTAGACATTGCCCTGGCATGCAATGCAGATGGTGTCCATGTTGGTCAATTGGACATGTCGGCACACGAAGTGCGGGAGCTCCTAGGGCCGGGTAAAATCATCGGCGTCTCGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGCGGTGTTTTCCCTACCTCCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATCAACGCTTCAAATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAACACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTACAATGTTCAGATTTCTTTTACATCTTTTGAGCAAATTATCCAACAAATTTTGTTGAAAGTTGGTAGTACAAAATGAAAGGGTGAAAGGCTGTAACTTTCAACTTCTTTAAGCTTTCAAAATGAATGTTGATGCTATCATTTAGCTATTCGCTAGTTGTTTTTTTTTTGTCAATCAGTG] [+] EMBL AK100920 [CCACCCGTGAAGCTCTGGAGTCGAGCGTGAACTTGGTCCACTACGCCATGGCGGCCGCACCACAGCAATCCGTGCACCCAAGCTTGCCCTCCTCAACCTCAACCCTCCGCCTCCTCATCTCCTCCTCCCCACGACGGCCTCCTCCGCCGCCGCCAAGAGCCCGCCGGTATAACAGGCTCGCGGCGTCGGCTTCGGCGGCGCGGGAGATGCCGTGGCCGCACGTGCTGACGGTGGCCGGCTCCGACTCCGGCGGCGGCGCCGGCATCCAGGCCGACATCAAGGCCTGCGCCGCGCTGGGAGCCTACTGCTCCTCCGTCGTCACCGCCGTCACTGCCCAGAACACCGCCGGCGTCCAGGGGATTCATGTGGTGCCAGAGGAGTTCATCCGGGAGCAGCTCAACTCGGTTCTTTCGGACATGTCGGTGGATGTGGTCAAGACAGGAATGCTCCCTTCAATCGGAGTAGTCAGAGTTTTATGTGAAAGTCTAAAGAAGTTTCCAGTCAAAGGCAGCTTTAGTGGTGGATCCAGTTATGGTGTCCACAAGTGGAGATACTCTTTCAGAATCATCTACTCTCTCTGTATATAGGGATGAATTATTTGCTATGGCTGATATAGTCACCCCAAATGTGAAAGAAGCGTCGAGATTACTTGGGGGTGTATCTTTGCGCACTGTTTCTGACATGCGCAATGCAGCGGAGTCCATTTACAAATTTGGTCCAAAACATGTACTTGTGAAAGGTGGGGATATGCTAGAATCCTCAGATGCAACTGATGTATTTTTTGATGGTAAGGAGTTCATTGAGCTCCATGCGCATCGCATAAAGACCCATAACACACATGGAACTGGTTGCACTTTAGCTTCATGTATAGCTTCCGAATTAGCGAAAGGTGCAACGATGCTGCATGCTGTTCAGGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTCGTTGGAAATGGACCTCAAGGCCCTTTTGATCACCTTTTCAAGCTCAAGTGTCCGCCATACAATGTTGGCTCACAGCCAAGCTTTAAGCCAGACCAACTCTTCCTGTATGCAGTGACAGACTCTGGGATGAACAAAAAGT GGGGTCGTTCAATCAAAGAAGCTGTGCAAGCTGCCATTGAAGGTGGCGCTACCATTGTACAACTGAGAGAAAAAGATTCCGAAACAAGAGAGTTTTTGGAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATCAACGACCGGGTAGACATTGCCCTGGCATGCAATGCAGATGGTGTCCATGTTGGTCAATTGGACATGTCGGCACACGAAGTGCGGGAGCTCCTAGGGCCGGGTAAAATCATCGGCGTCTCGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGCGGTGTTTTCCCTACCTCCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATCAACGCTTCAAATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAACACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTACAATGTTCAGATTTCTTTTACATCTTTTGAGCAAATTATCCAACAAATTTTGTTGAAAGTTGGTAGTACAAAATGAAAGGGTGAAAGGCTGTAACTTTCAACTTCTTTAAGCTTTCAAAATGAATGTTGATGCTATCATTTAGCTATTCGCTAGTTGTTTTTTTTTTGTCAATCAGTG] [+] EMBL AK066087 [ TGAAGCTCTGGAGTCGAGCGTGAACTTGGTCCACTACGCCATGGCGGCCGCACCACAGCAATCCGTGCACCCAAGCTTGCCCTCCTCAACCTCAACCCTCCGCCTCCTCATCTCCTCCTCCCCACGACGGCCTCCTCCGCCGCCGCCAAGAGCCCGCCGGTATAACAGGCTCGCGGCGTCGGCTTCGGCGGCGCGGGAGATGCCGTGGCCGCACGTGCTGACGGTGGCCGGCTCCGACTCCGGCGGCGGCGCCGGCATCCAGGCCGACATCAAGGCCTGCGCCGCGCTGGGAGCCTACTGCTCCTCCGTCGTCACCGCCGTCACTGCCCAGAACACCGCCGGCGTCCAGGGGATTCATGTGGTGCCAGAGGAGTTCATCCGGGAGCAGCTCAACTCGGTTCTTTCGGACATGTCGGTGGATGTGGTCAAGACAGGAATGCTCCCTTCAATCGGAGTAGTCAGAGTTTTATGTGAAAGTCTAAAGAAGTTTCCAGTCAA AGCTTTAGTGGTGGATCCAGTTATGGTGTCCACAAGTGGAGATACTCTTTCAGAATCATCTACTCTCTCTGTATATAGGGATGAATTATTTGCTATGGCTGATATAGTCACCCCAAATGTGAAAGAAGCGTCGAGATTACTTGGGGGTGTATCTTTGCGCACTGTTTCTGACATGCGCAATGCAGCGGAGTCCATTTACAAATTTGGTCCAAAACATGTACTTGTGAAAGGTGGGGATATGCTAGAATCCTCAGATGCAACTGATGTATTTTTTGATGGTAAGGAGTTCATTGAGCTCCATGCGCATCGCATAAAGACCCATAACACACATGGAACTGGTTGCACTTTAGCTTCATGTATAGCTTCCGAATTAGCGAAAGGTGCAACGATGCTGCATGCTGTTCAGGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTCGTTGGAAATGGACCTCAAGGCCCTTTTGATCACCTTTTCAAGCTCAAGTGTCCGCCATACAATGTTGGCTCACAGCCAAGCTTTAAGCCAGACCAACTCTTCCTGTATGCAGTGACAGACTCTGGGATGAACAAAAAGT GGGGTCGTTCAATCAAAGAAGCTGTGCAAGCTGCCATTGAAGGTGGCGCTACCATTGTACAACTGAGAGAAAAAGATTCCGAAACAAGAGAGTTTTTGGAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATCAACGACCGGGTAGACATTGCCCTGGCATGCAATGCAGATGGTGTCCATGTTGGTCAATTGGACATGTCGGCACACGAAGTGCGGGAGCTCCTAGGGCCGGGTAAAATCATCGGCGTCTCGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGCGGTGTTTTCCCTACCTCCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATCAACGCTTCAAATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAACACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTACAATGTTCA ] [+] EMBL AK122089 [ GCTTGCCCTCCTCAACCTCAACCCTCCGCCTCCTCATCTCCTCCTCCCCACGACGGCCTCCTCCGCCGCCGCCAAGAGCCCGCCGGTATAACAGGCTCGCGGCGTCGGCTTCGGCGGCGCGGGAGATGCCGTGGCCGCACGTGCTGACGGTGGCCGGCTCCGACTCCGGCGGCGGCGCCGGCATCCAGGCCGACATCAAGGCCTGCGCCGCGCTGGGAGCCTACTGCTCCTCCGTCGTCACCGCCGTCACTGCCCAGAACACCGCCGGCGTCCAGGGGATTCATGTGGTGCCAGAGGAGTTCATCCGGGAGCAGCTCAACTCGGTTCTTTCGGACATGTCGGTGGATGTGGTCAAGGCAGGAATGCTCCCTTCAATCGGAGTAGTCAGAGTTTTATGTGAAAGTCTAAAGAAGTTTCCAGTCAAAGGCAGCTTTAGTGGTGGATCCAGTTATGGTGTCCACAAGTGGAGATACTCTTTCAGAATCATCTACTCTCTCTGTATATAGGGATGAATTATTTGCTATGGCTGATATAGTCACCCCAAATGTGAAAGAAGCGTCGAGATTACTTGGGGGTGTATCTTTGCGCACTGTTTCTGACATGCGCAATGCAGCGGAGTCCATTTACAAATTTGGTCCAAAACATGTACTTGTGAAAGGTGGGGATATGCTAGAATCCTCAGATGCAACTGATGTATTTTTTGATGGTAAGGAGTTCATTGAGCTCCATGCGCATCGCATAAAGACCCATAACACACATGGAACTGGTTGCACTTTAGCTTCATGTATAGCTTCCGAATTAGCGAAAGGTGCAACGATGCTGCATGCTGTTCAGGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTCGTTGGAAATGGACCTCAAGGCCCTTTTGATCACCTTTTCAAGCTCAAGTGTCCGCCATACAATGTTGGCTCACAGCCAAGCTTTAAGCCAGACCAACTCTTCCTGTATGCAGTGACAGACTCTGGGATGAACAAAAAGT GGGGTCGTTCAATCAAAGAAGCTGTGCAAGCTGCCATTGAAGGTGGCGCTACCATTGTACAACTGAGAGAAAAAGATTCCGAAACAAGAGAGTTTTTGGAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATCAACGACCGGGTAGACATTGCCCTGGCATGCAATGCAGATGGTGTCCATGTTGGTCAATTGGACATGTCGGCACACGAAGTGCGGGAGCTCCTAGGGCCGGGTAAAATCATCGGCGTCTCGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGCGGTGTTTTCCCTACCTCCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATCAACGCTTCAAATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAACACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGTATGTAAGGTTCAATGTTCATATTTCTTTTACATCTTTTGAGCAAATTATCCAACAAATTTTGTTGAAAGTTGGTAGTACAAAATGAAAGGGTGAAAGGCTGTtt ] [+] EMBL CF309479 [ TCCCCAGATGCAACTGATGTATTTTTTGATGGTAAGGAGTTCATTGAGCTCCATGCGCATCGCATAAAGACCCATAACACACATGGAACTGGTTGCACTTTAGCTTCATGTATAGCTTCCGAATTAGCGAAAGGTGCAACGATGCTGCATGCTGTTCAGGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTTGTCGTTGGAAATGGACCTCAAGGCCCTTTTGATCACCTTTTCAAGCTCAAGTGTCCGCCATACAATGTTGGCTCACAGCCAAGCTTTAAGCCAGACCAACTCTTCCTGTATGCAGTGACAGACTCTGGGATGAACAAAAAGTGGGGGTCGTTCAATCAAAGAAGCTGTGCAAGCTGCCATTGAAGGTGGCGCTACCATTGTACAACTGAGAGAAAAAGATTCCGAAACAAGAGAGTTTTTGGAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATCAACGACCGGGTAGACATTGCCCTGGCATGCAATGCAGATGGTGTCCATGTTGGTCAATTGGACATGTCGG ACACGAAGTGC ] [+] EMBL AU057828 [ GGGTCGTTCAATCAAAGAAGCTGTGCAAGCTGCCATTGAAGGTGGCGCTACCATTGTACAACTGAGAGAAAAAGATTCCGAAACAAGAGAGTTTTTGGAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATCAACGACCGGGTAGACATTGCCCTGGCATGCAATGCAGATGGTGTCCATGTTGGTCAATTGGACATGTCGGCACACGAAGNCGGGGAGCTCCTAGGGCCGGGTAAAATCATCGGCGTCTCGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGCGGTGTTTTCCCTACCTCCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATCAACGCTTCAAATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAACACCTCTAGAACCTNGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAAAAAaa ] [-] EMBL CB656742 [ GCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATCAACGACCGGGTAGACATTGCCCTGGCATGCAATGCAGATGGTGTCCATGTTGGTCAATTGGACATGTCGGCACACGAAGTGCGGGAGCTCCTAGGGCCGGGTAAAATCATCGGCGTCTCGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGCGGTGTTTTCCCTACCTCCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATCAACGCTTCAAATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAACACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTACAATGTTCAGATTTCTTTTACATCTTTTGAGCAAATTATCCAACAAATTTTGTTGAAAGTTGGTAGTACAAAATGAAAGGGTGAAAGGCTGTAACTTTCAACTTCTTTAAGCTTTCAAAATGAATGTT ] [-] EMBL CB656741 [ CCTGGCATGCAATGCAGATGGTGTCCATGTTGGTCAATTGGACATGTCGGCACACGAAGTGCGGGAGCTCCTAGGGCCGGGTAAAATCATCGGCGTTTGGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGCGGTGTTTTCCCTCCCTCCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGCCGGTGGTCGCTATTGGCGGCATCAACGCTTCAAATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTTTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGCCCAACCCCTCTAGACCCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTACAATGTTCAGATTTCTTTTACATCTTTTGGGCAAATTATCCGACAAATTTTGTTGAAAGTTGGTACTACAAAATGAAAGGGTCAAAGCCTGTAACTTTCAACTTCTTTttgaagg ] [-] EMBL CB656778 [ AAAATCATCGGCGTTTGGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGCGGTGTTTTCCCTCCCTCCAGGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATTTAAGCTGCCTGTGGTCGTTATTGGCGGCATCAACGCTTCAAATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAACCCCTCTAGAACCTAGAGCTAGTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTCCAATGTTCAGATTTCTTTTACATCTTTTGAGCAAATTATCCAACAAATTTTGTTGAAAGTTGGTAGTACAAAATGAAAGGGTGAAAGGCTGTAACTTTCAACTTCTTTTAGaaagga ] [-] EMBL CF309480 [ CCTACCTCCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATCAACGCTTCAAATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAACACCTTTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTACAATGTTCGGATTTCTTTTACATCTTTTGAGCAAATTATCCAACAAATTTTGTTGAAAGTTGGTAGTACAAAATGAAAGGGTGAAAGGCTGTAACTTTCAACTTCTTTAAGCTTTCAAAATGAAaaaaaaa ] [+] EMBL BQ908192 [ GTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAACACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATC AAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTACAATGTTCAGATTTCTTTTACATCTTTTGAAC AATTATCC ACAAATTTTGTTGAAAGTTGGTAGTAC AAATGAAAGGGTGAAAGGCTGTAACTTTCAACTTCTTTAAGCTTTC AAATGAATGTTGATGCTAaaaaaaa ] consensusID : consensus_13698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 864 fasta sequence [GACGAGACAAGGGGGAGAGAAAAAGATTCCGAAACAAGAGAGTTTTTGGAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATCAACGACCGGGTAGACATTGCCCTGGCACGCAATGCAGATGGTGTCCATGTTGGTCAATCGGACATGTCGGCACACGAAGTGCGGGAGCTCCTGGGGCCGGGTAAAATCATCGGCGTCTCGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGCGGTGTTTTCCCTACCTNCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGNCTGTGGTCGCTATTGGCGGCATCAACGCTT-AAATGCAGGTTCAGNGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAACACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTACAATGTTCAGATTTCTTTTACATCTTTTGAGCAAATTATCCAACAAATTTTGTTGAAAGTTGGTAGTACAAAATGAAAGGGTGAAAGGCTGTAACTTTCAACTTCTTTAAGAAGGGAAAATGAATGTTGATGCTATCAAAAAAAAAAAAAAAAAAGA] [+] EMBL CA765813 [GACGAGACAAGGGGGAGAGAAAAAGATTCCGAAACAAGAGAGTTTTTGGAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATCAACGACCGGGTAGACATTGCCCTGGCACGCAATGCAGATGGTGTCCATGTTGGTCAATCGGACATGTCGGCACACGAAGTGCGGGAGCTCCTGGGGCCGGGTAAAATCATCGGCGTCTCGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGCGGTGTTTTCCCTACCTNCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGNCTGTGGTCGCTATTGGCGGCATCAACGCTT AAATGCAGGTTCAGNGATGGAGCTTGGTCTC ] [-] EMBL CB656779 [ AGATGGTGTCCATGTTGGTCAATTGGACATGTCGGCACACGAAGTGCGGGAGCTCCTAGGGCCGGGTAAAATCATCGGCGTCTCGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGCGGTGTTTTCCCTACCTCCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATCAACGCTTCAAATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAACACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTACAATGTTCAGATTTCTTTTACATCTTTTGAGCAAATTATCCAACAAATTTTGTTGAAAGTTGGTAGTACAAAATGAAAGGGTGAAAGGCTGTAACTTTCAACTTCTTTAAGAAGGGAAAATGAATGTTGATGCTATCAAAAAAAAAAAAAAAAAAGA] [-] EMBL OSS1358A [ AGGGGATATGTTTATCAAAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTACAATGTTCAGATTTCTTTTACATCTTTTGAGCAAATTATCCAACAAATTTTGTTGAAAGTTGGTAGTACAAAATGAAAGGGTGANAGGCTGTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13698#0 CCACCCGTGAAGCTCTGGAGTCGAGCGTGAACTTGGTCCACTACGCCATGGCGGCCGCAC 60 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 CACAGCAATCCGTGCACCCAAGCTTGCCCTCCTCAACCTCAACCCTCCGCCTCCTCATCT 120 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 CCTCCTCCCCACGACGGCCTCCTCCGCCGCCGCCAAGAGCCCGCCGGTATAACAGGCTCG 180 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 CGGCGTCGGCTTCGGCGGCGCGGGAGATGCCGTGGCCGCACGTGCTGACGGTGGCCGGCT 240 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 CCGACTCCGGCGGCGGCGCCGGCATCCAGGCCGACATCAAGGCCTGCGCCGCGCTGGGAG 300 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 CCTACTGCTCCTCCGTCGTCACCGCCGTCACTGCCCAGAACACCGCCGGCGTCCAGGGGA 360 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 TTCATGTGGTGCCAGAGGAGTTCATCCGGGAGCAGCTCAACTCGGTTCTTTCGGACATGT 420 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 CGGTGGATGTGGTCAAGACAGGAATGCTCCCTTCAATCGGAGTAGTCAGAGTTTTATGTG 480 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 AAAGTCTAAAGAAGTTTCCAGTCAAAGGCAGCTTTAGTGGTGGATCCAGTTATGGTGTCC 540 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 ACAAGTGGAGATACTCTTTCAGAATCATCTACTCTCTCTGTATATAGGGATGAATTATTT 600 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 GCTATGGCTGATATAGTCACCCCAAATGTGAAAGAAGCGTCGAGATTACTTGGGGGTGTA 660 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 TCTTTGCGCACTGTTTCTGACATGCGCAATGCAGCGGAGTCCATTTACAAATTTGGTCCA 720 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 AAACATGTACTTGTGAAAGGTGGGGATATGCTAGAATCCTCAGATGCAACTGATGTATTT 780 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 TTTGATGGTAAGGAGTTCATTGAGCTCCATGCGCATCGCATAAAGACCCATAACACACAT 840 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 GGAACTGGTTGCACTTTAGCTTCATGTATAGCTTCCGAATTAGCGAAAGGTGCAACGATG 900 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 CTGCATGCTGTTCAGGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGAT 960 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 CTTGTCGTTGGAAATGGACCTCAAGGCCCTTTTGATCACCTTTTCAAGCTCAAGTGTCCG 1020 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 CCATACAATGTTGGCTCACAGCCAAGCTTTAAGCCAGACCAACTCTTCCTGTATGCAGTG 1080 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 ACAGACTCTGGGATGAACAAAAAGTGGGGTCGTTCAATCAAAGAAGCTGTGCAAGCTGCC 1140 consensus_13698#1 ------------------------------------------------------------ consensus_13698#0 ATTGAAGGTGGCGCTACCATTGTACAACTGAGAGAAAAAGATTCCGAAACAAGAGAGTTT 1200 consensus_13698#1 ---------------GACGAGACAAGGGGGAGAGAAAAAGATTCCGAAACAAGAGAGTTT 45 * * ******************************* consensus_13698#0 TTGGAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATC 1260 consensus_13698#1 TTGGAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATC 105 ************************************************************ consensus_13698#0 AACGACCGGGTAGACATTGCCCTGGCATGCAATGCAGATGGTGTCCATGTTGGTCAATTG 1320 consensus_13698#1 AACGACCGGGTAGACATTGCCCTGGCACGCAATGCAGATGGTGTCCATGTTGGTCAATCG 165 *************************** ****************************** * consensus_13698#0 GACATGTCGGCACACGAAGTGCGGGAGCTCCTAGGGCCGGGTAAAATCATCGGCGTCTCG 1380 consensus_13698#1 GACATGTCGGCACACGAAGTGCGGGAGCTCCTGGGGCCGGGTAAAATCATCGGCGTCTCG 225 ******************************** *************************** consensus_13698#0 TGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGT 1440 consensus_13698#1 TGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGT 285 ************************************************************ consensus_13698#0 GGCGGTGTTTTCCCTACCTCCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTG 1500 consensus_13698#1 GGCGGTGTTTTCCCTACCTNCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTG 345 ******************* **************************************** consensus_13698#0 AAGACAGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATCAACGCTTCA 1560 consensus_13698#1 AAGACAGTTTGCCTGGCATCTAAGCTGNCTGTGGTCGCTATTGGCGGCATCAACGCTT-A 404 *************************** ****************************** * consensus_13698#0 AATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCC 1620 consensus_13698#1 AATGCAGGTTCAGNGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCC 464 ************* ********************************************** consensus_13698#0 GCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACC 1680 consensus_13698#1 GCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACC 524 ************************************************************ consensus_13698#0 AACACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCA 1740 consensus_13698#1 AACACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCA 584 ************************************************************ consensus_13698#0 AAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGAT 1800 consensus_13698#1 AAATGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGAT 644 ************************************************************ consensus_13698#0 CAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAG 1860 consensus_13698#1 CAAAAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAG 704 ************************************************************ consensus_13698#0 GTACAATGTTCAGATTTCTTTTACATCTTTTGAGCAAATTATCCAACAAATTTTGTTGAA 1920 consensus_13698#1 GTACAATGTTCAGATTTCTTTTACATCTTTTGAGCAAATTATCCAACAAATTTTGTTGAA 764 ************************************************************ consensus_13698#0 AGTTGGTAGTACAAAATGAAAGGGTGAAAGGCTGTAACTTTCAACTTCTTTAAGCTTTCA 1980 consensus_13698#1 AGTTGGTAGTACAAAATGAAAGGGTGAAAGGCTGTAACTTTCAACTTCTTTAAGAAGGGA 824 ****************************************************** * consensus_13698#0 AAATGAATGTTGATGCTATCATTTAGCTATTCGCTAGTTGTTTTTTTTTTGTCAATCAGT 2040 consensus_13698#1 AAATGAATGTTGATGCTATCAAAAAAAAAAAAAAAAAAGA-------------------- 864 ********************* * * * consensus_13698#0 G 2041 consensus_13698#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||