cluster # 13725

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Oryza sativa
cluster # 13725 cluster # 13725 Sequences # 13 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13725#0 length = 722 sequences # 2
consensus_13725#1 length = 661 sequences # 8

consensus_13725#2 length = 607 sequences # 1
consensus_13725#3 length = 417 sequences # 1
consensus_13725#4 length = 340 sequences # 1

consensusID : consensus_13725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 722
fasta sequence

                              [CGGTGATCCTCCTTTACCCTTATCTTTCTCCTCCAGCTTGCTACCTCGTCTTTCCTCCATGGTACCTCGTCTTCTCCACTTATCCACCATCAATGTTCCTGACTTCAATTTTTCGTTGCCTTGGTTTTCTAGTTGTATTTTGCCCCATCCATTAGGCCATAGAATCAAATCCATCTCCAGCGGGTGCCACCAAATATTGCGGCATCGCCATACTGATTTGTTGGACTCTAAGGTTGAGGCGATCTATATCCGAGGCGGCCATTGCCGGGCTGAAAGCAGCGGCCGTCACTGCTGTCTGCACCGCGATCCCCACCTTTGCCAGTGTTCGTATGTCCAAGTGGGCAAAGGCCAATCTGGGCAACCCAGTCGCCAAGACAGTCATCATCACCTACGCTGCTGGCATGGCCTACTTCATCGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGCAAAGGCCAGGGCTAAATCTGAATATACTCTCACAAAATCGAACTAGATTTGCAGCAATATGGCATCAATGACATGCCCTTTTTATCCCAGAGAGAATA-CTACCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTGCAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCAAAAAA]

[+] EMBL AK121184             [CGGTGATCCTCCTTTACCCTTATCTTTCTCCTCCAGCTTGCTACCTCGTCTTTCCTCCATGGTACCTCGTCTTCTCCACTTATCCACCATCAATGTTCCTGACTTCAATTTTTCGTTGCCTTGGTTTTCTAGTTGTATTTTGCCCCATCCATTAGGCCATAGAATCAAATCCATCTCCAGCGGGTGCCACCAAATATTGCGGCATCGCCATACTGATTTGTTGGACTCTAAGGTTGAGGCGATCTATATCCGAGGCGGCCATTGCCGGGCTGAAAGCAGCGGCCGTCACTGCTGTCTGCACCGCGATCCCCACCTTTGCCAGTGTTCGTATGTCCAAGTGGGCAAAGGCCAATCTGGGCAACCCAGTCGCCAAGACAGTCATCATCACCTACGCTGCTGGCATGGCCTACTTCATCGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGCAAAGGCCAGGGCTAAATCTGAATATACTCTCACAAAATCGAACTAGATTTGCAGCAATATGGCATCAATGACATGCCCTTTTTATCCCAGAGAGAATA CTACCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTGCAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCT            ]
[+] EMBL BI800597             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCATCAATGACATGCCCTTTTTATCCCAGAGAGAATATCTACCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCAAAAAA]




>consensus_13725#0
CGGTGATCCTCCTTTACCCTTATCTTTCTCCTCCAGCTTGCTACCTCGTCTTTCCTCCAT
GGTACCTCGTCTTCTCCACTTATCCACCATCAATGTTCCTGACTTCAATTTTTCGTTGCC
TTGGTTTTCTAGTTGTATTTTGCCCCATCCATTAGGCCATAGAATCAAATCCATCTCCAG
CGGGTGCCACCAAATATTGCGGCATCGCCATACTGATTTGTTGGACTCTAAGGTTGAGGC
GATCTATATCCGAGGCGGCCATTGCCGGGCTGAAAGCAGCGGCCGTCACTGCTGTCTGCA
CCGCGATCCCCACCTTTGCCAGTGTTCGTATGTCCAAGTGGGCAAAGGCCAATCTGGGCA
ACCCAGTCGCCAAGACAGTCATCATCACCTACGCTGCTGGCATGGCCTACTTCATCGCCG
GGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGCAAAGGCCAGGG
CTAAATCTGAATATACTCTCACAAAATCGAACTAGATTTGCAGCAATATGGCATCAATGA
CATGCCCTTTTTATCCCAGAGAGAATACTACCAGTGTTGTCTCTTCTGTGTTCTTGCATG
CATGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTGCA
ATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCAAAA
AA

consensusID : consensus_13725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 661
fasta sequence

                              [AGACAAGGGGGACACAAATCNATCCATCCATCGATCGATCTCGCATTCAGTAGCTTGAATTAGCTAGTTGGTTAGTGTGATAGTGTGTGTCGATCTGGTGTGTTTTGATCGAGATGTCGAAC--AAGGCTACGGATTCTT-CCCA-GCTCATCGAG-C-AGAAGTTCGCCAT-GC-CAAG-CAGAGCTCCCATGAGGC-GCCA-TTGCCGGGCTGAAAGCAGC-G---CC-GTCACTGC-TGTCTGCACCGCGATCCCCACCTTTGCCAGTGTTCGTATGTC-CAAGTGGGCAAAGGCCAATCTGGGC-AACCCAGTCGCCAAGACAGTCATCATC-ACCTACGCTGCTGGCATGGCCTACTTCATCGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGCA-AAGG-CCAGGGCTAAATCTGAATATACTCTC-ACAAAATCGAACTAGATTTGCAGCAATATGGCATC-AATGACATGCCCTTTTTATCCCA-GAGAGAATACTA-CCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGAAAAAAAAAA]

[-] EMBL CA763225             [AGACAAGGGGGACACAAATCNATCCATCCATCGATCGATCTCGCATTCAGTAGCTTGAATTAGCTAGTTGGTTAGTGTGATAGTGTGTGTCGATCTGGTGTGTTTTGATCGAGATGTCGAAC  AAGGCTACGGATTCTT CCCA GCTCATCGAG C AGAAGTTCGCCATGGC CAAG CAGAGCTCCCATGAGGCGGCCA TTGCCGGGCTGAAAGCAGCGG   CC GTCACTGC TGTCTGCACCGCGATCCCCACCTTTGCCAGTGTCCGTATGTC CAAGTGGGCAAAGGCCAATCTGGGC AACCCAGTCGCCAAGACAGTCATCATT ACCTACGCTGCTGGCATGGCCTACTTTATCGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGCA AAGG CCAGGGCTAAATCTGAATATACTCTC ACAAAATCGAACTAGATTTGCAGCAATATGGCATC AATGACATGCCCTTTTTATCCCA GAGAGAATACTA CCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCA   AAAAAAA   ]
[+] EMBL CA765709             [                     ATCCATCCATCGATCGATCTCGCATTCAGTAGCTTGAATTAGCTAGTTGGTTAGTGTGATAGTGTGTGTCGATCTGGTGTGTTTTGATCGAGATGTCGAAC  AAGGCTACGGATTCTT CCCA GCTCATCGAG C AGAAGTTCGCCATGGC CAAG CAGAGCTCCCATGAGGCGGCCA TTGCCGGGCTGAAAGCAGCGG   CC GTCACTGC TGTCTGCACCGCGATCCCCACCTTTGCCAGTGTTCGTATGTC CAAGTGGGCAAAGGCCAATCTGGGC AACCCAGTCGCCAAGACAGTCATCATC ACCTACGCTGCTGGCATGGCCTACTTCATCGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGCA AAGG CCAGGGCTAAATCTGAATATACTCTC ACAAAATCGAACTAGATTTGCAGCAATATGGCATC AATGACATGCCCTTTTTATCCCA GAGAGAATACTA CCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATG           ]
[+] EMBL BI800185             [                                                                                                      gTTTGATCGAGATGTCGAAC  AAGGCTACGGATTCTT CCCAGGCTCATCGAG C AGAAGTTCGCCATGGC CAAGACAGAGCTCCCATGA GC GCCA TTGCCGGGCTGAAAGCAGCGG   CC GTCACTGC TGTCTGCACCGCGATCCCCACCTTTGCCAGTGTTCGTATGTC CAAGTGGGCAAAGGCC ATCTGGGC AACCCAGTCGCCAAGACAGTCATCATC ACCTACGCTGCTGGCATGGCCTACTTCATCGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGC  AAGG CCAGGGCTAAATCTGAATATACTCTC ACAAAATCAAACTAGATTTGCACCAATATGGCATC AATGACATGCCCTTTTTATCCCA GAGAGAATACTA CCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATATCCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTTTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGAAAAAAAAAA]
[+] EMBL BI802015             [                                                                                                                  TGTCGAACCAAAGCCTACGGATTCTTCCCCA GCTCATCGAC CAAGAAGTTCGCCAT GCACAA  CAGAGCTCCCATGA GC GCCA TTGCCGGGCTGAAAGCAGC G   CC GTCACTGC TGTCTGCACCGCGATCCCCACCTTTGCCAGTGTTCGTATGTC CAAGT GGCAAAGCCCAATCTGGCC AACCCAGTCGCCAAGACAGTCATCATC ACCTACGCTGCT GCAT GCCTACTTCATC CCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGCA AAGGCCCAGGGCTAAATCTGAATATACTCTC ACAAAATCGAACTAGATTTGCAGCAATATGGCATC AATGACATGCCCTTTTTATCCCACGAGAGAATACTACCCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATAT CAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGACCAGGAGCTTCCTTCATGGAAAAAAAAA ]
[+] EMBL BI800952             [                                                                                                                                          gT CCCA GCTCATCGAGCC AGAAGTTCCCCAT GC CAA  CAGAGCTCCCATGA GC GCCA TT CC GGCTGAAAGCAGC G   CC GTCACTGC TGTCTGCACCGCGATCCCCACCTTTGCCAGTGTTCGTATGTC CAAGTGGGCAAAGGCCAATCTGGGC AACCCAGTCGCCAAGACAGTCATCATC ACCTACGCTGCTGGCATGGCCTACTTCATCGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGCA AAGG CCAGGGCTAAATCTGAATATACTCTC ACCAAATCGAACTAGATTTGCAGC ATATGGCATC AATGACATGCCCTTTTTATCCCA GAGAGAATACTA CCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGAAAAAA    ]
[+] EMBL BI796834             [                                                                                                                                                                        CCAT GC CAAC CAGAGCTCCCATGAGGC GCCATTTGCCGGGCTGAAAGCAGC G   CCAGTCACTGC TGTCTGCACCGCGATCCCCACCTTTGCCAGTGTTCGTATGTC CAAGTGGGCAAAGGCCAATCTGGGCAAACCCAGTCGCCAAGACAGTCATCATC ACCTACGCTGCTGGCATCGCCTACTTCATCGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGCA AAGG CCAGGGCTAAATCTGAATATACTCTC AC AAATCGAACTAGATTTGCAGCAATATGGCATCAAATGACATGCCCTTTTTATCCCA GAGAGAATACTA CCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCA   AAAAA     ]
[+] EMBL BI801224             [                                                                                                                                                                             GC CAAG CAGAGCTCCCATGAGGC GCCATTTGCCGGGCTGAAAGCAGC GGCACA GTCACTGC TGTCTGCACCGCGATCCCCACCTTTGCCAGTGTTCGTATGTCACAAGTGGGCAAAGGCCAATCTGGGCAAACCCAGTC CCAAGACAGTCATCATC ACCTACGCTGCTGGCATGGCCTACTTCATCGCCGGGGAGAAGAAGTTGGTGGA CTGTCCAGGAAGCACTCCCTCGAGGCTGCA AAGG CCAGGGCTAAATCTGAATATACTCTC ACAAAATCGAACTAGATTTGCAGCAATATGGCATC AATGACATGCCCTTTTTATCCCA GAGAGAATACTA CCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTAC ATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGACCAGGAGCTTCCTTCATGGAAAAAAAA  ]
[+] EMBL BI800637             [                                                                                                                                                                                                TGA GC GCCA  TGCCGGGCTGAAAGCAGC G   CC GTC CTGCTTGTCTGCGCCGCGATCCCCACCTTTGCC GTGTTCGTATGTC C AGTGGGCAAAGGCC ATCTGGGC AA CCAGTCGCCAAGACAGTCATCATCGACCTACGCTGCTGGCATGGCCTACTTCATCGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGCAGAAGG CCAGGGCTAAATCTGAATATACTCTCGACGAAATCGAACTAGATTTGCAGCCATATGGCATC  ATGACATGCCCTTTTTATCCCA GAGAGAATACTA CCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTAC ATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCCGGAGCTTCCTTCATGGAAAAAAAAAA]




>consensus_13725#1
AGACAAGGGGGACACAAATCNATCCATCCATCGATCGATCTCGCATTCAGTAGCTTGAAT
TAGCTAGTTGGTTAGTGTGATAGTGTGTGTCGATCTGGTGTGTTTTGATCGAGATGTCGA
ACAAGGCTACGGATTCTTCCCAGCTCATCGAGCAGAAGTTCGCCATGCCAAGCAGAGCTC
CCATGAGGCGCCATTGCCGGGCTGAAAGCAGCGCCGTCACTGCTGTCTGCACCGCGATCC
CCACCTTTGCCAGTGTTCGTATGTCCAAGTGGGCAAAGGCCAATCTGGGCAACCCAGTCG
CCAAGACAGTCATCATCACCTACGCTGCTGGCATGGCCTACTTCATCGCCGGGGAGAAGA
AGGTGGTGGAGCTGTCCAGGAAGCACTCCCTCGAGGCTGCAAAGGCCAGGGCTAAATCTG
AATATACTCTCACAAAATCGAACTAGATTTGCAGCAATATGGCATCAATGACATGCCCTT
TTTATCCCAGAGAGAATACTACCAGTGTTGTCTCTTCTGTGTTCTTGCATGCATGTGTGT
GTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAA
GGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGAAAAAAAAA
A

consensusID : consensus_13725#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [GAGACAAGGGGGACACAAATCATCCATCCATCGATCGATCTCGCATTCAGTAGCTTGAATTAGCTAGTTGGTTAGTGTGATAGTGTGTGTCGATCTGGTGTGTTTTGATCGAGATGTCGAACAAGGCTACGGATTCTTCCCAGCTCATCGAGCAGAAGTTCGCCATGGCCAAGCAGAGCTCCCATGTTTGCCAGTGTTTGTATGTCCAAGTGGGCAAAGGCCAATTTGGGCAACCCAGTCGCCAAGACAGTCATCATTACCTACGCTGCTGGCATGGCCTACTTTATTGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCCCTCCCTCGAGGCTGCAAAGGCCAGGGCTAAATCTGAATATACTCTCCCAAAATCGAACTAGATTTGCAGCAATATGGCATCAATGACATGCCCTTTTTATCCCAGAGAGAATACTACCAGTGTTGTCTTTTCTGTGTTCTTGCATGCATGTGTGTGTTCCCTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA763224             [GAGACAAGGGGGACACAAATCATCCATCCATCGATCGATCTCGCATTCAGTAGCTTGAATTAGCTAGTTGGTTAGTGTGATAGTGTGTGTCGATCTGGTGTGTTTTGATCGAGATGTCGAACAAGGCTACGGATTCTTCCCAGCTCATCGAGCAGAAGTTCGCCATGGCCAAGCAGAGCTCCCATGTTTGCCAGTGTTTGTATGTCCAAGTGGGCAAAGGCCAATTTGGGCAACCCAGTCGCCAAGACAGTCATCATTACCTACGCTGCTGGCATGGCCTACTTTATTGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAAGCCCTCCCTCGAGGCTGCAAAGGCCAGGGCTAAATCTGAATATACTCTCCCAAAATCGAACTAGATTTGCAGCAATATGGCATCAATGACATGCCCTTTTTATCCCAGAGAGAATACTACCAGTGTTGTCTTTTCTGTGTTCTTGCATGCATGTGTGTGTTCCCTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCAAAAAAAAAAAAAAAAAAA]




>consensus_13725#2
GAGACAAGGGGGACACAAATCATCCATCCATCGATCGATCTCGCATTCAGTAGCTTGAAT
TAGCTAGTTGGTTAGTGTGATAGTGTGTGTCGATCTGGTGTGTTTTGATCGAGATGTCGA
ACAAGGCTACGGATTCTTCCCAGCTCATCGAGCAGAAGTTCGCCATGGCCAAGCAGAGCT
CCCATGTTTGCCAGTGTTTGTATGTCCAAGTGGGCAAAGGCCAATTTGGGCAACCCAGTC
GCCAAGACAGTCATCATTACCTACGCTGCTGGCATGGCCTACTTTATTGCCGGGGAGAAG
AAGGTGGTGGAGCTGTCCAGGAAGCCCTCCCTCGAGGCTGCAAAGGCCAGGGCTAAATCT
GAATATACTCTCCCAAAATCGAACTAGATTTGCAGCAATATGGCATCAATGACATGCCCT
TTTTATCCCAGAGAGAATACTACCAGTGTTGTCTTTTCTGTGTTCTTGCATGCATGTGTG
TGTTCCCTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTA
AGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCAAAAAAAAAAAA
AAAAAAA

consensusID : consensus_13725#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [TCTGGTCAACGCCAGTCGTCCATAGACAAGGTCATCATCGACACTACGCTGTCTGTGCATGGCCTACGTTCATCGCACGGGGAGTAAGAAGTGTTGGTGGAGCTGTGCCAGGAAGCAACTGCCCTCGAGGCTGCAATAGGCACAGGGCTATAATGCTGGAATATACTGCTCACAAAAATCCGAACTAGATTTGCAGCAAATTATGGCATGCAATGGACATGGGCCCTTGTTTGATCCCACGAGGAGATATGACCTACCCGTGGTTGTCTGCTGTGCTGGTGTTCTTGCATGCATGGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGAAAAA]

[+] EMBL BI802250             [TCTGGTCAACGCCAGTCGTCCATAGACAAGGTCATCATCGACACTACGCTGTCTGTGCATGGCCTACGTTCATCGCACGGGGAGTAAGAAGTGTTGGTGGAGCTGTGCCAGGAAGCAACTGCCCTCGAGGCTGCAATAGGCACAGGGCTATAATGCTGGAATATACTGCTCACAAAAATCCGAACTAGATTTGCAGCAAATTATGGCATGCAATGGACATGGGCCCTTGTTTGATCCCACGAGGAGATATGACCTACCCGTGGTTGTCTGCTGTGCTGGTGTTCTTGCATGCATGGTGTGTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGAAAAA]




>consensus_13725#3
TCTGGTCAACGCCAGTCGTCCATAGACAAGGTCATCATCGACACTACGCTGTCTGTGCAT
GGCCTACGTTCATCGCACGGGGAGTAAGAAGTGTTGGTGGAGCTGTGCCAGGAAGCAACT
GCCCTCGAGGCTGCAATAGGCACAGGGCTATAATGCTGGAATATACTGCTCACAAAAATC
CGAACTAGATTTGCAGCAAATTATGGCATGCAATGGACATGGGCCCTTGTTTGATCCCAC
GAGGAGATATGACCTACCCGTGGTTGTCTGCTGTGCTGGTGTTCTTGCATGCATGGTGTG
TGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTA
AGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGAAAAA

consensusID : consensus_13725#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [CAAAAGGCACAGGGGCTTTAATTCTGAATTATACTCTTCACATCGAACTAGATTTTCCAACCAATATGGCATCAATGGACATGCCCTGTTTATCCCAAGAGAGAATACTACCAGTTTGTCTCTTCTGTGTTCTTCGCATGCATGTTCTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATCCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGATATCTTATCTCGCTCTGTTGTGGATAACTGGCTACTGATCATGATGTTAATGCTAGCAGATACTCCCTCGTCAAAAAAAA]

[+] EMBL BI801816             [CAAAAGGCACAGGGGCTTTAATTCTGAATTATACTCTTCACATCGAACTAGATTTTCCAACCAATATGGCATCAATGGACATGCCCTGTTTATCCCAAGAGAGAATACTACCAGTTTGTCTCTTCTGTGTTCTTCGCATGCATGTTCTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATCCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGATATCTTATCTCGCTCTGTTGTGGATAACTGGCTACTGATCATGATGTTAATGCTAGCAGATACTCCCTCGTCAAAAAAAA]




>consensus_13725#4
CAAAAGGCACAGGGGCTTTAATTCTGAATTATACTCTTCACATCGAACTAGATTTTCCAA
CCAATATGGCATCAATGGACATGCCCTGTTTATCCCAAGAGAGAATACTACCAGTTTGTC
TCTTCTGTGTTCTTCGCATGCATGTTCTGTTCACTGTGTTATATGCAGTGAAAATTGTGA
GATGATATCCCTAAGTACAATTAATTAAGGTGTGGGTGCTAATAAAAGCTATGCATATGA
GCAGGAGCTTCCTTCATGGATATCTTATCTCGCTCTGTTGTGGATAACTGGCTACTGATC
ATGATGTTAATGCTAGCAGATACTCCCTCGTCAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13725#0      CGGTGATCCTCCTTTACCCTTATCTTTCTCCTCCAGCTTGCTACCTCGTCTTTCCTCCAT 60
consensus_13725#3      ------------------------------------------------------------
consensus_13725#1      ----------------------------------------------------AGACAAGG 8
consensus_13725#2      ---------------------------------------------------GAGACAAGG 9
consensus_13725#4      ------------------------------------------------------------
                                                                                   

consensus_13725#0      GGTACCTCGTCTTCTCCACTTATCCACCATCAATGTTCCTGACTTCAATTTTTCGTTGCC 120
consensus_13725#3      ------------------------------------------------------------
consensus_13725#1      GGGACACAAATCNATCCATCCATCGATCGATCTCGCATTCAGTAGCTTGAATTAGCTAGT 68
consensus_13725#2      GGGACACAAATCA-TCCATCCATCGATCGATCTCGCATTCAGTAGCTTGAATTAGCTAGT 68
consensus_13725#4      ------------------------------------------------------------
                                                                                   

consensus_13725#0      TTGGTTTTCTAGTTGTATTTTGCCCCATCCATTAGGCCATAGAATCAAATCCATCTCCAG 180
consensus_13725#3      ------------------------------------------------------------
consensus_13725#1      TGGTTAGTGTGATAGTGTGT--GTCGATCTGGTGTGTTTTG--ATCGAG---ATGTCGAA 121
consensus_13725#2      TGGTTAGTGTGATAGTGTGT--GTCGATCTGGTGTGTTTTG--ATCGAG---ATGTCGAA 121
consensus_13725#4      ------------------------------------------------------------
                                                                                   

consensus_13725#0      CGGGTGCCACCAAATATTGCGGCATCGCCATACTGATTTGTTGGACTCTAAGGTTGAGGC 240
consensus_13725#3      ------------------------------------------------------------
consensus_13725#1      CAAG-GCTACGGATTCTTCC-----CAGCTCATCGAGCAGAAGTTCGCCATG-CCAAGCA 174
consensus_13725#2      CAAG-GCTACGGATTCTTCC-----CAGCTCATCGAGCAGAAGTTCGCCATGGCCAAGCA 175
consensus_13725#4      ------------------------------------------------------------
                                                                                   

consensus_13725#0      GATCTATATCCGAGGCGGCCATTGCCGGGCTGAAAGCAGCGGCCGTCACTGCTGTCTGCA 300
consensus_13725#3      ------------------------------------------------------------
consensus_13725#1      GAGCTCC--CATGAGGCGCCATTGCCGGGCTGAAAGCAGCG-CCGTCACTGCTGTCTGCA 231
consensus_13725#2      GAGCTCC--CATG----------------------------------------------- 186
consensus_13725#4      ------------------------------------------------------------
                                                                                   

consensus_13725#0      CCGCGATCCCCACCTTTGCCAGTGTTCGTATGTCCAAGTGGGCAAAGGCCAATCTGGGCA 360
consensus_13725#3      -------------------------------------------TCTGGTCAACGCCAGTC 17
consensus_13725#1      CCGCGATCCCCACCTTTGCCAGTGTTCGTATGTCCAAGTGGGCAAAGGCCAATCTGGGCA 291
consensus_13725#2      --------------TTTGCCAGTGTTTGTATGTCCAAGTGGGCAAAGGCCAATTTGGGCA 232
consensus_13725#4      ------------------------------------------------------------
                                                                                   

consensus_13725#0      ACCCAGTCGCCAAGACAGTCATCATCACCTACGCTG-CTG-GCATGGCCTAC-TTCATCG 417
consensus_13725#3      GTCCA-TAGACAAGGTCATCATCGACAC-TACGCTGTCTGTGCATGGCCTACGTTCATCG 75
consensus_13725#1      ACCCAGTCGCCAAGACAGTCATCATCACCTACGCTG-CTG-GCATGGCCTAC-TTCATCG 348
consensus_13725#2      ACCCAGTCGCCAAGACAGTCATCATTACCTACGCTG-CTG-GCATGGCCTAC-TTTATTG 289
consensus_13725#4      ------------------------------------------------------------
                                                                                   

consensus_13725#0      C-CGGGGAGAAGAAGGTG---GTGGAGCTGT-CCAGGAAGCACT--CCCTCGAGGCTGCA 470
consensus_13725#3      CACGGGGAGTAAGAAGTGTTGGTGGAGCTGTGCCAGGAAGCAACTGCCCTCGAGGCTGCA 135
consensus_13725#1      C-CGGGGAGAAGAAGGTG---GTGGAGCTGT-CCAGGAAGCACT--CCCTCGAGGCTGCA 401
consensus_13725#2      C-CGGGGAGAAGAAGGTG---GTGGAGCTGT-CCAGGAAGCCCT--CCCTCGAGGCTGCA 342
consensus_13725#4      ----------------------------------------------------------CA 2
                                                                                 **

consensus_13725#0      A-AGGC-CAGGGCTAAA---TCTGAAT-ATACT-CTCACAAAA--TCGAACTAGATTTGC 521
consensus_13725#3      ATAGGCACAGGGCTATAATGCTGGAAT-ATACTGCTCACAAAAATCCGAACTAGATTTGC 194
consensus_13725#1      A-AGGC-CAGGGCTAAA---TCTGAAT-ATACT-CTCACAAAA--TCGAACTAGATTTGC 452
consensus_13725#2      A-AGGC-CAGGGCTAAA---TCTGAAT-ATACT-CTCCCAAAA--TCGAACTAGATTTGC 393
consensus_13725#4      AAAGGCACAGGGGCTTTAATTCTGAATTATACTCTTCACA-----TCGAACTAGATTTTC 57
                       * **** *****           **** *****  ** **      ************ *

consensus_13725#0      AGCAA--TATGGCAT-CAATG-ACATG--CCCTTTTT--ATCCCA-GAGAGAATA----C 568
consensus_13725#3      AGCAAATTATGGCATGCAATGGACATGGGCCCTTGTTTGATCCCACGAGGAGATATGACC 254
consensus_13725#1      AGCAA--TATGGCAT-CAATG-ACATG--CCCTTTTT--ATCCCA-GAGAGAATA----C 499
consensus_13725#2      AGCAA--TATGGCAT-CAATG-ACATG--CCCTTTTT--ATCCCA-GAGAGAATA----C 440
consensus_13725#4      CAACCAATATGGCAT-CAATGGACATG--CCCTGTTT--ATCCCAAGAGAGAATA----C 108
                              ******** ***** *****  ****  **  ****** ***   ***    *

consensus_13725#0      TACCAGTG-TTGTCTCTTCTG----TGTTCTT-GCATGCATG-TGTGTGTTCACTGTGTT 621
consensus_13725#3      TACCCGTGGTTGTCTGCTGTGCTGGTGTTCTT-GCATGCATGGTGTGTGTTCACTGTGTT 313
consensus_13725#1      TACCAGTG-TTGTCTCTTCTG----TGTTCTT-GCATGCATG-TGTGTGTTCACTGTGTT 552
consensus_13725#2      TACCAGTG-TTGTCTTTTCTG----TGTTCTT-GCATGCATG-TGTGTGTTCCCTGTGTT 493
consensus_13725#4      TACCAGT--TTGTCTCTTCTG----TGTTCTTCGCATGCATG--TTCTGTTCACTGTGTT 160
                       **** **  ******  * **    ******* *********   * ***** *******

consensus_13725#0      ATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTGCAATTAATTAAGGTGTGGGTGCT 681
consensus_13725#3      ATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCT 373
consensus_13725#1      ATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCT 612
consensus_13725#2      ATATGCAGTGAAAATTGTGAGATGATATGCCTAAGTACAATTAATTAAGGTGTGGGTGCT 553
consensus_13725#4      ATATGCAGTGAAAATTGTGAGATGATATCCCTAAGTACAATTAATTAAGGTGTGGGTGCT 220
                       **************************** ******* ***********************

consensus_13725#0      AATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCAAAAAA------------------- 722
consensus_13725#3      AATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGAAAAA---------------- 417
consensus_13725#1      AATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGAAAAAAAAAA----------- 661
consensus_13725#2      AATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCAAAAAAAAAAAAAAAAAAA------ 607
consensus_13725#4      AATAAAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGATATCTTATCTCGCTCTGTTG 280
                       ************************************   *                    

consensus_13725#0      ------------------------------------------------------------
consensus_13725#3      ------------------------------------------------------------
consensus_13725#1      ------------------------------------------------------------
consensus_13725#2      ------------------------------------------------------------
consensus_13725#4      TGGATAACTGGCTACTGATCATGATGTTAATGCTAGCAGATACTCCCTCGTCAAAAAAAA 340