cluster # 13728

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Oryza sativa
cluster # 13728 cluster # 13728 Sequences # 14 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13728#0 length = 1850 sequences # 11
consensus_13728#1 length = 303 sequences # 1

consensus_13728#2 length = 279 sequences # 1
consensus_13728#3 length = 219 sequences # 1

consensusID : consensus_13728#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1850
fasta sequence

                              [TCCTCGCCTCGCTTCGGCTCTCACCAACCAAACCAACAACCTCGCTCCGATGGCCGCGCCAACGTCGTCGCAGCCGGTGGCGCGCGTCCTCCCCCGCGGCGGCGGCGGCGGGTTCCGCGCCTTCCCGGAGTCCGCCCCGGCTTCCCTCCGCTTCTCCGTCGGCCGCCGCCGCGCCGCTCGCCTAGAGGTG-AAGGCGTCTGCAAATGTATTTGGGAACTACTTCCAGGTTGCAAC-TTATGGAGAGTCTCATGG-AGGCGGTGTTGGTTGCGTAATC-AGTGGATGCCCACCCAG-AATCCCACTTACTGAAGCAGATATGCAAGTAGAACTCGACC-GGAGACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTGCAAAATTCTTTC-AGGGACACATGAAGGAATGACCACTGGGACACCAATTCATGTTTTTGTCCCGAACACAGATCAGAGAGGGGGTGATTACAGTGAAATGGCTAAGGCCTACAGACCTTCACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAGGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTATGACACTGTAACAATGGAACAGATAGAAAGCAACATTGTTAGATGTCCTGATCCAGAATATGCACAGAAGATGATTGATGCAATCGATAAAGTACGAGTTAGAGGTGATTCGATTGGT-GGTGTGGTCACATGCATTGCAAGAAATGTTCCTCGTGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCTATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATCGGCAGTGGATTTGCAGGTACTGACTACACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGCTGGAAATGTGAGAACAAGAACTAATCGTTCAGGCGGTGTGCAGGGAGGGATATCAAATGGTGAAATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGGAAGAAACAACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCACGACC-CATGTGTTGTCCCTCGCGCTGTGCCGATGGTGGAGTCCATGGCCGCATTAGTCCTCATGGACCAGCTGATGGCGCACATTGCTCA-ATGTGAGATGTTTCCACTGAACCTTGCCCTACA-AGAACCAGTTGGCTCTGCCAGCAGCGTACCTGCATTTGCACCAGATCTATCATAATG-CCCCCTCCCCCCCCCCCAGCTTGTTTATCATCTATCATATTTCTGGGTTTTCTAAGGGGTTCGCAGTTTTGCCACAAAGCCTGTATCCTAGTTTATAT-CTCGAGTTA-TTGTACCCAAGGAATCCGTTATACAGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGACAATCTGTGCTTACATCAGGTTATTTTGAGCAATAAAAATCTCCATTTATGAAAAAAACTGCCTCCTGTATGCACTGAAGCACGTACCTCATTGAGAACTTACATTACACAGTAGCCATAGTGGAGAGCATCCATCGACCATGCAGATGGAGGTTTTACATGTCAAGATAGATTATGGAGACAAACCTGAACTCGTTGACATATCAAATATGGCAATTAGGCCCTTCCTACTGACAGATGTAACTTTTAGCGTTCTCAAGAGTAGTCGCAGAAGTAGCAAGGCATTTTTACTCGATGGCTATA]

[+] EMBL AK099850             [TCCTCGCCTCGCTTCGGCTCTCACCAACCAAACCAACAACCTCGCTCCGATGGCCGCGCCAACGTCGTCGCAGCCGGTGGCGCGCGTCCTCCCCCGCGGCGGCGGCGGCGGGTTCCGCGCCTTCCCGGAGTCCGCCCCGGCTTCCCTCCGCTTCTCCGTCGGCCGCCGCCGCGCCGCTCGCCTAGAGGTG AAGGCGTCTGCAAATGTATTTGGGAACTACTTCCAGGTTGCAAC TTATGGAGAGTCTCATGG AGGCGGTGTTGGTTGCGTAATC AGTGGATGCCCACCCAG AATCCCACTTACTGAAGCAGATATGCAAGTAGAACTCGACC GGAGACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTGCAAAATTCTTTC AGGGACACATGAAGGAATGACCACTGGGACACCAATTCATGTTTTTGTCCCGAACACAGATCAGAGAGGGGGTGATTACAGTGAAATGGCTAAGGCCTACAGACCTTCACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAGGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTATGACACTGTAACAATGGAACAGATAGAAAGCAACATTGTTAGATGTCCTGATCCAGAATATGCACAGAAGATGATTGATGCAATCGATAAAGTACGAGTTAGAGGTGATTCGATTGGT GGTGTGGTCACATGCATTGCAAGAAATGTTCCTCGTGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCTATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATCGGCAGTGGATTTGCAGGTACTGACTACACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGCTGGAAATGTGAGAACAAGAACTAATCGTTCAGGCGGTGTGCAGGGAGGGATATCAAATGGTGAAATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGGAAGAAACAACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCACGACC CATGTGTTGTCCCTCGCGCTGTGCCGATGGTGGAGTCCATGGCCGCATTAGTCCTCATGGACCAGCTGATGGCGCACATTGCTCA ATGTGAGATGTTTCCACTGAACCTTGCTCTACA AGAACCAGTTGGCTCTGCCAGCAGCGTACCTGCATTTGCACCAGATCTATCATAATG CCCCCTCCCCCCCCCCCAGCTTGTTTATCATCTATCATATTTCTGGGTTTTCTAAGGGGTTCGCAGTTTTGCCACAAAGCCTGTATCCTAGTTTATAT CTCGAGTTA TTGTACCCAAGGAATCCGTTATACAGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGACAATCTGTGCTTACATCAGGTTATTTTGAGCAATAAAAATC                                                                                                                                                                                                                                                                      ]
[+] EMBL C74464               [        TCGCTTCGGCTCTCACCAACCAAACCAACAACCTCGCTCCGATGGCCGCGCCAACGTCGTCGCAGCCGGTGGCGCGCGTNCTCCCCCGCGGCGGCGGCGGCGGGTTCCGCGCCTTCCCGGAGTCCGCCCCGGCTTCCCTCCGCTTCTCCGTCGGCCGCNG CGCGCCGCTCGCCTAGAGGTGAAAGGCGTCTGCAAATGTATTTGGGAACTACTTCCAGGTTGCAACTTTATGGAGAGTCTCATGGAAGGCGGTGTTGGTTGCGTAATCAATTGGATGCCCAACCAGAAATCCCACTTACTGAAGCAGATATGCAAGTAGAACTCGACCGGGAGANGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL C72774               [             TCGGCTCTCACCAACCAAACCAACAACCTCGCTCCGATGGCCGCGCCAACGTCNTCGCAGCCGGTGGCGCGCGTCCTCCCCCGCGGCGGCGGCGGCGGGTTCCGCGCCTTCCCGGAGTCCGCCCCGGCTTCCCTCCGCTTCTCCGTCGGCCGCCGCCGCGCCGCTCGCCTAGAGGTG AAGGCGTCTGCAAATGTATTTGGGAACTACTTCCAGGTTGCAAC TTATGGAGAGTCTCATGG AGGCGGTGTTGGTTGCGTAATC AGTGGATGCCCACCCAG AATCCCACTTACTGAAGCAGATATGCAAGTAGAACTCGACC GGAGACGGCCAGGCCAGAGCAGAATAACCAACCCAAGAAAGGAGACTGACACTTTCAAAATTCTTTCAAGGGACACATGAAGGAATGACCACTGGGACACCAATTCATGTTTTGNTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF303160             [                                                                                                                                                                                                                                                                                                              ggcacgaggAGCAGATATGCAAGTAGAACTCGACC GGAGACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTGCAAAATTCTTTC AGGGACACATGAAGGAATGACCACTGGGACACCAATTCATGTTTTTGTCCCGAACACAGATCAGAGAGGGGGTGATTACAGTGAAATGGCTAAGGCCTACAGACCTTCACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAGGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTATGACACTGTAACAATGGAACAGATAGAAAGCAACATTGTTAGATGTCCTGATCCAGAATATGCACAGAAGATGATTGATGCAATCGATAAAGTACGAGTTAGAGGTGATTCGATTGGTGGGTGTGGTCACATGCATTGCAAGAAATGTTCCTCGTGGGATTGGCGCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCTATGCTTTCTCTTCCTGC AGCAAGGGGTTTGAGATCGGCAGTGGATTTGCAGGTACTGACTACACTGGAAGTGAGCATAATGATGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB654761             [                                                                                                                                                                                                                                                                                                                                                                                                          AAAATTCTTTC AGGGACACATGAAGGAATGACCACTGGGACACCAATTCATGTTTTTGTCCCGAACACAGATCAGAGAGGGGGTGATTACAGTGAAATGGCTAAGGCCTACAGACCTTCACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAGGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTATGACACTGTAACAATGGAACAGATAGAAAGCAACATTGTTAGATGTCCTGATCCAGAATATGCACAGAAGATGATTGATGCAATCGATAAAGTACGAGTTAGAGGTGATTCGATTGGT GGTGTGGTCACATGCATTGCAAGAAATGTTCCTCGTGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCTATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATCGGCAGTGGATTTGCAGGTACTGACTACACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGCTGGAAATGTGAGAACAAGAACTAATCGTTCAGGCGGTGTGCAGGGAGGGATATCAAATGGTGAAATTATATACTTCAGAGTAGCTTTCAAGCCAACCGCGACTATTGGGAAGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA767184             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      acgagnaCAAGGGGTTTGAGATCGGCAGTGGATTTGCAGGTACTGACTACACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGCTGGAAATGTGAGAACAAGAACTAATCGTTCAGGCGGTGTGCAGGGAGGGATATCAAATGGTGAAATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGGAAGAAACAACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCACGACC CATGTGTTGTCCCTCGCGCTGTGCCGATGGTGGAGTCCATGGCCGCATTAGTCCTCATGGACCAGCTGATGGCGCACATTGCTCA ATGTGAGATGTTTCCACTGAACCTTGCCTTACA AGAACCAGTTGGCTCTGCCAGCAGCGTACCCGCATTTGCACCAGATCTATCATAATGCCCCCCCCCCCCCCCCCCAGCTTGTTTATCATCTATCATATTTCTGGGTTTTCTAAGGGGTTCGCAGTTTTGCCACAAAGCCTGTATCCTAGTTTATAT CTCGAGTTA TTGTACCCAAGGAATCCGTTATACAGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGACAATCTGTGCTTACATCAGGTTATTTTGAGCAATAAAAATCTCCATTT                                                                                                                                                                                                                                                               ]
[-] EMBL AU174025             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCAGGCGGTGTGCAGGGAGGGATATCAAATGGTGAAATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGGAAGAAACAACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCACGACC CATGTGTTGTCCCTCGCGCTGTGCCGATGGTGGAGTCCATGGCCGCATTAGTCCTCATGGACCAGCTGATGGCGCACATTGCTCA ATGTGAGATGTTTCCACTGAACCTTGCTCTACA AGAACCAGTTGGCTCTGCCAGCAGCGTACCTGCATTTGCACCAGATCTATCATAATG CCCCCTCCCCCCCCCCCAGCTTGTTTATCATCTATCATATTTCTGGGTTTTCTAAGGGGTTCGCAGTTTTGCCACAAAGCCTGTATCCTAGTTTATAT CTCGAGTTA TTGTACCCA                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL BI306661             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAAGAAACAACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCACGACCNCATGTGTTGTCCCTCGCGCTGTGCCGATGGTGGAGTCCATGGCCGCATTAGTCCTCATGGACCAGCTGATGGCGCACATTGCTCA ATGTGAGATGTTTCCACTGAACCTTGCCCTACA AGAACCAGTTGGCTCTGCCAGCAGCGTACCTGCATTTGCACCAGATCTATCATAATG CCCCCT     CCCCCCAGCTTGTTTATCATCTATCATATTTCTGGGTTTTCTAAGGGGTTCGCAGTTTTGCCACAAAGCCTGTATCCTAGTTTATAT CTCGAGTTA TTGTACCCAAGGAATCCGTTATACAGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGACAATCTGTGCTTACATCAGGTTATTTTGAGCAATAAAAATCT                                                                                                                                                                                                                                                                     ]
[+] EMBL BQ907664             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGTGGAGTCCATGGCCGCATTAGTCCTCATGGACCAGCTGATGGCGCACNTTGCTCANATGTGAGATGTTTCCACTGAACCTTGCCCTACANAGAACCCGTTGGCTCTGCCAGCAGCGTACCTGCATTTGCACCAGATCTATCATAATG CCCCCCCCCCCCCCCCCAGCTTGTTTATCATCTATCATATTTCTGGGTTTTCTAAGGGGTTC CAGTTTTGCCAC AAGCCTGTATCCTAGTTTATAT CTCGAGTTA TTGTACCCAAGGAATCCGTTATACAGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGACAATCTGTGCTTACATCAGGTTATTTTGAGC AT AAAATCTCCATTTATG                                                                                                                                                                                                                                                            ]
[+] EMBL BI812682             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tgGCCAC AAGCCTGTATCCTAGTTTATATGCTCGAGTTATTTGTACCCAAGGAATCCGTTATACCGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGACCATCTGTGCTTACATCAGGTTATTTTGAGCCATAAAAATCTCCCTTTATGAAAAAA                                                                                                                                                                                                                                                      ]
[-] EMBL OS38102              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tcacATAGAAATACGTTCATGCGTGTTTTGTGATATGGACAATCTGTGCTTACATCAGGTTAATTTGAGCGATAACGATCTCCATTTATGAGAGAGACTGCCTCCTGTATGCACTGAAGCACGTACCTCATTGAGAACTTACATTACACAGTAGCCATAGTGGAGAGCATCCATCGACCATGCAGATGGAGGTTTTACATGTCAAGATAGATTATGGAGACAAACCTGAACTCGTTGACATATCAAATATGGCAATTAGGCCCTTCCTACTGACAGATGTAACTTTTAGCGTTCTCAAGAGTAGTCGCAGAAGTAGCAAGGCATTTTTACTCGATGGCTATA]




>consensus_13728#0
TCCTCGCCTCGCTTCGGCTCTCACCAACCAAACCAACAACCTCGCTCCGATGGCCGCGCC
AACGTCGTCGCAGCCGGTGGCGCGCGTCCTCCCCCGCGGCGGCGGCGGCGGGTTCCGCGC
CTTCCCGGAGTCCGCCCCGGCTTCCCTCCGCTTCTCCGTCGGCCGCCGCCGCGCCGCTCG
CCTAGAGGTGAAGGCGTCTGCAAATGTATTTGGGAACTACTTCCAGGTTGCAACTTATGG
AGAGTCTCATGGAGGCGGTGTTGGTTGCGTAATCAGTGGATGCCCACCCAGAATCCCACT
TACTGAAGCAGATATGCAAGTAGAACTCGACCGGAGACGGCCAGGCCAGAGCAGAATAAC
CACCCCAAGAAAGGAGACTGACACTTGCAAAATTCTTTCAGGGACACATGAAGGAATGAC
CACTGGGACACCAATTCATGTTTTTGTCCCGAACACAGATCAGAGAGGGGGTGATTACAG
TGAAATGGCTAAGGCCTACAGACCTTCACATGCAGATGCAACTTATGACTTCAAATACGG
TGTTAGAGCAGTGCAGGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGC
TGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGATCTTGGCGTT
TGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTATGACACTGTAAC
AATGGAACAGATAGAAAGCAACATTGTTAGATGTCCTGATCCAGAATATGCACAGAAGAT
GATTGATGCAATCGATAAAGTACGAGTTAGAGGTGATTCGATTGGTGGTGTGGTCACATG
CATTGCAAGAAATGTTCCTCGTGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGA
ATTGGCGAAAGCTATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATCGGCAGTGGATT
TGCAGGTACTGACTACACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGCTGG
AAATGTGAGAACAAGAACTAATCGTTCAGGCGGTGTGCAGGGAGGGATATCAAATGGTGA
AATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGGAAGAAACAACATAC
TGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCACGACCCATGTGT
TGTCCCTCGCGCTGTGCCGATGGTGGAGTCCATGGCCGCATTAGTCCTCATGGACCAGCT
GATGGCGCACATTGCTCAATGTGAGATGTTTCCACTGAACCTTGCCCTACAAGAACCAGT
TGGCTCTGCCAGCAGCGTACCTGCATTTGCACCAGATCTATCATAATGCCCCCTCCCCCC
CCCCCAGCTTGTTTATCATCTATCATATTTCTGGGTTTTCTAAGGGGTTCGCAGTTTTGC
CACAAAGCCTGTATCCTAGTTTATATCTCGAGTTATTGTACCCAAGGAATCCGTTATACA
GTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGACAATCTGTGCTTA
CATCAGGTTATTTTGAGCAATAAAAATCTCCATTTATGAAAAAAACTGCCTCCTGTATGC
ACTGAAGCACGTACCTCATTGAGAACTTACATTACACAGTAGCCATAGTGGAGAGCATCC
ATCGACCATGCAGATGGAGGTTTTACATGTCAAGATAGATTATGGAGACAAACCTGAACT
CGTTGACATATCAAATATGGCAATTAGGCCCTTCCTACTGACAGATGTAACTTTTAGCGT
TCTCAAGAGTAGTCGCAGAAGTAGCAAGGCATTTTTACTCGATGGCTATA

consensusID : consensus_13728#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [CCGGCTGGCTGTATCCGTGCATGTTGGCACCCACGATGTTTATTCATATGGCCCCCTCCCCCCCCCCCCCCCCACGCTTGTTTAGTCATCTATCAGTATTTCTGGGTTTTCTAAGGGGTTCGCAGTTTTGCCCCCAAGCCTGTATCCTAGTTGTATATCTCGAGTTATTGTGACCCCAGGAATCCGTTATACCGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGGATATGGACCATCTGTGCTTACATCCGGTTATTTTGAGCCATTAAAATCTCCCATTTATGAAAAAAAAAA]

[+] EMBL BI805229             [CCGGCTGGCTGTATCCGTGCATGTTGGCACCCACGATGTTTATTCATATGGCCCCCTCCCCCCCCCCCCCCCCACGCTTGTTTAGTCATCTATCAGTATTTCTGGGTTTTCTAAGGGGTTCGCAGTTTTGCCCCCAAGCCTGTATCCTAGTTGTATATCTCGAGTTATTGTGACCCCAGGAATCCGTTATACCGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGGATATGGACCATCTGTGCTTACATCCGGTTATTTTGAGCCATTAAAATCTCCCATTTATGAAAAAAAAAA]




>consensus_13728#1
CCGGCTGGCTGTATCCGTGCATGTTGGCACCCACGATGTTTATTCATATGGCCCCCTCCC
CCCCCCCCCCCCCACGCTTGTTTAGTCATCTATCAGTATTTCTGGGTTTTCTAAGGGGTT
CGCAGTTTTGCCCCCAAGCCTGTATCCTAGTTGTATATCTCGAGTTATTGTGACCCCAGG
AATCCGTTATACCGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGGATATGG
ACCATCTGTGCTTACATCCGGTTATTTTGAGCCATTAAAATCTCCCATTTATGAAAAAAA
AAA

consensusID : consensus_13728#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [TTCTATGCATATGCCCCCCACCCCCCCCCCCCAAGCTTGGTTTATGCATGCTGATGCATGATGTTCTGGGTGTTTCTAAGGGGGTTGCCACGTCTGTTGCCACCAAAGCCTGGTGATGCCTGAGTGTTGATGATGCTGCGGAGTTGATTGGTGACCCCAAGGAATGCCGTTGATACAGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGACAATCTGTGCTTACATCAGGTTATTTTGACCATCAAAATCTCCATTTATGAAAAA]

[+] EMBL BI813197             [TTCTATGCATATGCCCCCCACCCCCCCCCCCCAAGCTTGGTTTATGCATGCTGATGCATGATGTTCTGGGTGTTTCTAAGGGGGTTGCCACGTCTGTTGCCACCAAAGCCTGGTGATGCCTGAGTGTTGATGATGCTGCGGAGTTGATTGGTGACCCCAAGGAATGCCGTTGATACAGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGACAATCTGTGCTTACATCAGGTTATTTTGACCATCAAAATCTCCATTTATGAAAAA]




>consensus_13728#2
TTCTATGCATATGCCCCCCACCCCCCCCCCCCAAGCTTGGTTTATGCATGCTGATGCATG
ATGTTCTGGGTGTTTCTAAGGGGGTTGCCACGTCTGTTGCCACCAAAGCCTGGTGATGCC
TGAGTGTTGATGATGCTGCGGAGTTGATTGGTGACCCCAAGGAATGCCGTTGATACAGTG
AGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGACAATCTGTGCTTACAT
CAGGTTATTTTGACCATCAAAATCTCCATTTATGAAAAA

consensusID : consensus_13728#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence

                              [CAGCTCATGGCGCACATTGCTCAATGTGAGATGTTTCCACTGAACCTTGCCCTACAAGAACCAGTTGGCTCTGCAGCAGCGTACCTGCATTTGCACCAGATCTATCATAATNSAGCTTGTTTATCATCTATCATATTTCTGGGTTTTCTAAGGGGTTCTCAGTTTTGCCACAAAGCCTGTATCCTAGTTTATATCTCGAGTTATTGTACCCAAGGAATC]

[+] EMBL AA750226             [CAGCTCATGGCGCACATTGCTCAATGTGAGATGTTTCCACTGAACCTTGCCCTACAAGAACCAGTTGGCTCTGCAGCAGCGTACCTGCATTTGCACCAGATCTATCATAATNSAGCTTGTTTATCATCTATCATATTTCTGGGTTTTCTAAGGGGTTCTCAGTTTTGCCACAAAGCCTGTATCCTAGTTTATATCTCGAGTTATTGTACCCAAGGAATC]




>consensus_13728#3
CAGCTCATGGCGCACATTGCTCAATGTGAGATGTTTCCACTGAACCTTGCCCTACAAGAA
CCAGTTGGCTCTGCAGCAGCGTACCTGCATTTGCACCAGATCTATCATAATNSAGCTTGT
TTATCATCTATCATATTTCTGGGTTTTCTAAGGGGTTCTCAGTTTTGCCACAAAGCCTGT
ATCCTAGTTTATATCTCGAGTTATTGTACCCAAGGAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13728#0      TCCTCGCCTCGCTTCGGCTCTCACCAACCAAACCAACAACCTCGCTCCGATGGCCGCGCC 60
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      AACGTCGTCGCAGCCGGTGGCGCGCGTCCTCCCCCGCGGCGGCGGCGGCGGGTTCCGCGC 120
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      CTTCCCGGAGTCCGCCCCGGCTTCCCTCCGCTTCTCCGTCGGCCGCCGCCGCGCCGCTCG 180
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      CCTAGAGGTGAAGGCGTCTGCAAATGTATTTGGGAACTACTTCCAGGTTGCAACTTATGG 240
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      AGAGTCTCATGGAGGCGGTGTTGGTTGCGTAATCAGTGGATGCCCACCCAGAATCCCACT 300
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      TACTGAAGCAGATATGCAAGTAGAACTCGACCGGAGACGGCCAGGCCAGAGCAGAATAAC 360
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      CACCCCAAGAAAGGAGACTGACACTTGCAAAATTCTTTCAGGGACACATGAAGGAATGAC 420
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      CACTGGGACACCAATTCATGTTTTTGTCCCGAACACAGATCAGAGAGGGGGTGATTACAG 480
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      TGAAATGGCTAAGGCCTACAGACCTTCACATGCAGATGCAACTTATGACTTCAAATACGG 540
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      TGTTAGAGCAGTGCAGGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGC 600
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      TGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGATCTTGGCGTT 660
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      TGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTATGACACTGTAAC 720
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      AATGGAACAGATAGAAAGCAACATTGTTAGATGTCCTGATCCAGAATATGCACAGAAGAT 780
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      GATTGATGCAATCGATAAAGTACGAGTTAGAGGTGATTCGATTGGTGGTGTGGTCACATG 840
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      CATTGCAAGAAATGTTCCTCGTGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGA 900
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      ATTGGCGAAAGCTATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATCGGCAGTGGATT 960
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      TGCAGGTACTGACTACACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGCTGG 1020
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      AAATGTGAGAACAAGAACTAATCGTTCAGGCGGTGTGCAGGGAGGGATATCAAATGGTGA 1080
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      AATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGGAAGAAACAACATAC 1140
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      TGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCACGACCCATGTGT 1200
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ----------------------------------------------------------CC 2
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      TGTCCCTCGCGCTGTGCCGATGGTGGAGTCCATGGCCGCATTAGTCCTCATGGACCAGCT 1260
consensus_13728#3      -------------------------------------------------------CAGCT 5
consensus_13728#1      GGCTGGCTGTATCCGTGCATGTTGGCACCCACGATGTTTATTCATATGGCCCCCTCCCCC 62
consensus_13728#2      -----------------------------------TTCTATGCATATGCCCCCCACCCCC 25
                                                                              *  * 

consensus_13728#0      GATGGCGCACATTGCTCAATGTGAGATGTTTCCACTGAACCT---TGCCCTACAAGAACC 1317
consensus_13728#3      CATGGCGCACATTGCTCAATGTGAGATGTTTCCACTGAACCT---TGCCCTACAAGAACC 62
consensus_13728#1      CCCCCCCCCCCACGCTTGTTTAGTCATCTATCAGTAT-TTCTGGGT-TTTCTAAGGGGTT 120
consensus_13728#2      CCCCCCCAAGCTTGGTTTATGCATGCTGATGCATGATGTTCTGGGTGTTTCTAAGGGGGT 85
                            *       * *   *      *    *        **   *       * *    

consensus_13728#0      AGTTGGCTCTGCCAGCAGCGT-ACCTGCATTTGCACCAGATCT-ATCATAATGCCCCCTC 1375
consensus_13728#3      AGTTGGCTCTGC-AGCAGCGT-ACCTGCATTTGCACCAGATCT-ATCATAATNS------ 113
consensus_13728#1      CGCAG----TTTTGCCCCCAA-GCCTG----TATCCTAGTTGT----ATATCTCG-AGTT 166
consensus_13728#2      TGCCACGTCTGTTGCCACCAAAGCCTGGTGATGCCTGAGTGTTGATGATGCTGCGGAGTT 145
                        *       *     *  *    ****    *     **   *    **           

consensus_13728#0      CCCCCCCCCCAGCT-TGTTTATCATC--TATCATATTTCTGGGTTTTCTAAGGGGTTCGC 1432
consensus_13728#3      ----------AGCT-TGTTTATCATC--TATCATATTTCTGGGTTTTCTAAGGGGTTCTC 160
consensus_13728#1      ATT--GTGACCCCA-GGAAT-CCGTT-ATACCGTGAGCATGAAGATAGAAATGCGTTCAT 221
consensus_13728#2      GATTGGTGACCCCAAGGAATGCCGTTGATACAGTGAGCATGAAGATAGAAATGCGTTCAT 205
                                   *   *  *  * *   **   *     **    *   ** * ****  

consensus_13728#0      A---GTTTTGCC-ACAAAGCCTGTATCCTAGTTTATATCTCGAGTTATTGTACCCAAGGA 1488
consensus_13728#3      A---GTTTTGCC-ACAAAGCCTGTATCCTAGTTTATATCTCGAGTTATTGTACCCAAGGA 216
consensus_13728#1      GCGTGTTTTGTGGATATGGAC--CATCTGTGCTTACATCCGGTTATTTTGAGCCATTAAA 279
consensus_13728#2      GCGTGTTTTGTG-ATATGGAC--AATCTGTGCTTACATCAGGTTATTTTGA-CCATCAAA 261
                           ******   * *  * *   ***   * *** ***  *   * ***  **     *

consensus_13728#0      ATCCGTTATACAGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGAC 1548
consensus_13728#3      ATC--------------------------------------------------------- 219
consensus_13728#1      ATCTCCCATTTATGAAAAAAAAAA------------------------------------ 303
consensus_13728#2      ATCTCC-ATTTATGAAAAA----------------------------------------- 279
                       ***                                                         

consensus_13728#0      AATCTGTGCTTACATCAGGTTATTTTGAGCAATAAAAATCTCCATTTATGAAAAAAACTG 1608
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      CCTCCTGTATGCACTGAAGCACGTACCTCATTGAGAACTTACATTACACAGTAGCCATAG 1668
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      TGGAGAGCATCCATCGACCATGCAGATGGAGGTTTTACATGTCAAGATAGATTATGGAGA 1728
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      CAAACCTGAACTCGTTGACATATCAAATATGGCAATTAGGCCCTTCCTACTGACAGATGT 1788
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      AACTTTTAGCGTTCTCAAGAGTAGTCGCAGAAGTAGCAAGGCATTTTTACTCGATGGCTA 1848
consensus_13728#3      ------------------------------------------------------------
consensus_13728#1      ------------------------------------------------------------
consensus_13728#2      ------------------------------------------------------------
                                                                                   

consensus_13728#0      TA 1850
consensus_13728#3      --
consensus_13728#1      --
consensus_13728#2      --