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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1562 fasta sequence
[ACCAAGATCCAATCCTCGCGAGCAGAATCGATGGCGACGGCGGCGGTGATGGCTGCTGTACCCTCGTCTTCGCCGGCCGACGCGGCGGAGGCTGTGGTTATGACGGAGGCGATGCCTTCTCTCCCGCAACGCCAGCAGCCGGTGTTCGTCGAGGGCAGAGGCGGGAAGCTGCGTGACCACGCCTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCTCCAATTTCGTCGCTCTGTACAACCGCGACGACGTGGAGTCTATCGGGCTGGACGACGCGGCTAGGAGGCTCGGCGTGGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCGTAGGGATCCTCGTGAGGAAGGCCAAGAATCGTTATTCTTGGATAGGCTTCGGCGGCGTCCCAATGGCATTGCGAGAACTCAAGGAGAGGGCATTGAGAGAGAAGTCTGGATTGGCTCCTCTGCCCGTGGAGGAGCCGTCTGCAGCCATTATGTCGGATGACGAAGATGAAGATAAGATGGGTGACGCTGATGGTGATACCGAGAGCGAGAAGCTGAGTCAACCAGTTGACAACCCTTCTGACAACAAGCCAGGCGCACCTCGCTGCCGGCTTAGATCTGACCATAGGAAGGAGAAGTCGCTTGGGTTGCTCACGCAGAATTTCGTGAAACTCTTCCTGACCATGGAGGTTGACACAATCTCACTTGATGAAGCTGCAAAGCTGCTACTTGGAGAAGGTCACGCAGAGAACAGTATGAGAACTAAAGTCCGGAGACTGTATGACATTGCTAACGTGCTGTCATCACTGAATTTCATTGATAAGATACAACAGGCAGACTCAAGGAAACCTGCATTCCGGTGGTTGGGCTCAGCGGGGAAACCAAAAGCTGAAAATGGTGTCACAATCGCAGTACCTCCACCAGGGAAGACCATATCGAACAAGAGAGCATTTGGGACTGAACTCACTAACATTGACATAAACAGAAGCAGACTGGACTCAACAATCCCAAAGAAAGCAAAGCTGACACTGAGTGGTGGTGAAATTTTGAAGAACTGCAAATTGTCAGTGCAGAAACAGCTCGGGCAGGGTAGCAAGGGTGGTTTTGTTTATGGGCCTTTCCACCCTGCTGGTGCAAGAAAACAAGAGCTTGACAATGGTAATAAAGGACACACAGATAATGTTCAAAACTGGGAGAGCCTTGCTGCTTCATTTCGACCACAATACCAGAACCAAGCATTGGGCGATCTTTTTGCTCATTATGTGGAAGCCTGGAAATCGTGGTACTCTGAATTTGCGCAAGGCAGCAGCATGATGCAGCAGCACTTTGGCATGCCTGTCATTAACCAGTTTTTGTAGTCAAATCATTAATCTCAAGCACTGTATTTCTTACCGCGTGCTTGGGATTTTACCTGTACAATTTGTCAGAAAATGAGGGAACAAAGACATGACCTAGGCCTAGGATCCATTGTATTTACTCAATGCAGGAAATATCCAGGCTATTCAGTCCAAAAGATAAACTCGCCTCATTGTTAGGCATGTAACTGTTAATTCATCTAGCTATA]
[+] EMBL AK111537 [ACCAAGATCCAATCCTCGCGAGCAGAATCGATGGCGACGGCGGCGGTGATGGCTGCTGTACCCTCGTCTTCGCCGGCCGACGCGGCGGAGGCTGTGGTTATGACGGAGGCGATGCCTTCTCTCCCGCAACGCCAGCAGCCGGTGTTCGTCGAGGGCAGAGGCGGGAAGCTGCGTGACCACGCCTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCTCCAATTTCGTCGCTCTGTACAACCGCGACGACGTGGAGTCTATCGGGCTGGACGACGCGGCTAGGAGGCTCGGCGTGGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCGTAGGGATCCTCGTGAGGAAGGCCAAGAATCGTTATTCTTGGATAGGCTTCGGCGGCGTCCCAATGGCATTGCGAGAACTCAAGGAGAGGGCATTGAGAGAGAAGTCTGGATTGGCTCCTCTGCCCGTGGAGGAGCCGTCTGCAGCCATTATGTCGGATGACGAAGATGAAGATAAGATGGGTGACGCTGATGGTGATACCGAGAGCGAGAAGCTGAGTCAACCAGTTGACAACCCTTCTGACAACAAGCCAGGCGCACCTCGCTGCCGGCTTAGATCTGACCATAGGAAGGAGAAGTCGCTTGGGTTGCTCACGCAGAATTTCGTGAAACTCTTCCTGACCATGGAGGTTGACACAATCTCACTTGATGAAGCTGCAAAGCTGCTACTTGGAGAAGGTCACGCAGAGAACAGTATGAGAACTAAAGTCCGGAGACTGTATGACATTGCTAACGTGCTGTCATCACTGAATTTCATTGATAAGATACAACAGGCAGACTCAAGGAAACCTGCATTCCGGTGGTTGGGCTCAGCGGGGAAACCAAAAGCTGAAAATGGTGTCACAATCGCAGTACCTCCACCAGGGAAGACCATATCGAACAAGAGAGCATTTGGGACTGAACTCACTAACATTGACATAAACAGAAGCAGACTGGACTCAACAATCCCAAAGAAAGCAAAGCTGACACTGAGTGGTGGTGAAATTTTGAAGAACTGCAAATTGTCAGTGCAGAAACAGCTCGGGCAGGGTAGCAAGGGTGGTTTTGTTTATGGGCCTTTCCACCCTGCTGGTGCAAGAAAACAAGAGCTTGACAATGGTAATAAAGGACACACAGATAATGTTCAAAACTGGGAGAGCCTTGCTGCTTCATTTCGACCACAATACCAGAACCAAGCATTGGGCGATCTTTTTGCTCATTATGTGGAAGCCTGGAAATCGTGGTACTCTGAATTTGCGCAAGGCAGCAGCATGATGCAGCAGCACTTTGGCATGCCTGTCATTAACCAGTTTTTGTAGTCAAATCATTAATCTCAAGCACTGTATTTCTTACCGCGTGCTTGGGATTTTACCTGTACAATTTGTCAGAAAATGAGGGAACAAAGACATGACCTAGGCCTAGGATCCATTGTATTTACTCAATGCAGGAAATATCCAGGCTATTCAGTCCAAAAGATAAACTCGCCTCATTGTTAGGCATGTAACTGTTAATTCATCTAGCTATA]
consensusID : consensus_1373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1511 fasta sequence
[CTCCCGCTCGCCGAAACCCTCGCCGTCGCCGCGCCATGGCCGCCGCCGCCGATGCTCCCCCGCCTCCTCCGGAGGTCGCCCCGCCCGCGCCCGCGCCCGCCCCCGCGCCGGCGCCATATCAGCCGCCGCGGCTGGCGGTGGCCGACGGAGCGGGAGGTGGCGGCGGCGGCGGCGGGAAGCCGTGCAGGCACCACGCGTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCACCAACTTCGTGGCGCTGTACGACCGGGAGGACGTGGAGTCGGTGGGGCTGGACGACGCGGCGAGGCGGCTGGGCGTCGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCATCGGGATGCTCGTGAGGAGGGCCAAGAATCGGTATACGTGGATCGGCTTCGGTGGAGTCCCTGCGGCGCTCGCGAAACTCAAGGAGATGTCACTGAGGGCGGTGTCAAGCGTGGCGTCACCGTCGCTGGATGAAACATCTGCTGCTAATGTCTCGGATGATGAGGATGATGACAAGTTAGATGATGCTGAGGGCGATGCGGAGAGCGAGAAGCTCAGCCTCAGCCAGTCCATTGACAATCCTTCTGATAAGCCTGATGCACCCCCTTGCAAGCTTCGATCCGAGCATAGGAAGGAGAAGTCCCTTGGGCTGCTCACTCAGAATTTTGTCAAGCTCTTCCTCACCATGGAGATTGAGACGATCTCACTTGATGAAGCCGCAAAGCGGCTCCTTGGAGAGGGACATGCGGCGAACAATATGAGAACCAAAGTTCGGCGATTGTACGATATTGCCAATGTGCTGTCTTCTTTGAATCTTATTGAGAAGACACAACAGGCGGACTCAAGAAAACCTGCATTCCGGTGGCTGGGCCAGGCAAAACGGAATGAAGGCGTCACGGTTGCTTTACCCCCAACCAAGACGTTGCCTAACAAGAGAGCATTTGGTACTGATCTGACTAACATTGACAATAAGAGGGGTAAGTTGGACTCCACAATGGAGAACAGAGGCAAGCCCACGCAGGATGGTGGCAACCTATTCAATAATTTGCAGAGGCAATTAGGGCAAGAGAACAGGAGCGATTTTGCTTATGGCCCCTTCCACCCTGCTGTTGCAAGGAAACAAGAACATGGTAATCGCACAGTACAAGAGAAGGAGAGGAAGAGCATTCAAGACTGGGAGAACCTTGCTTCTTCTTTCCGTCCGCAATATCAAAATCCAGGACTGAACGATCTTTTTGGCCACTACATGGAAGCAAGGAGGTCATGGTACTCGGATCTCAGGCGAGACAGAGCATCATAAAACCAGATTCAGGCCGGTCCGTTGTAAACAAAATTCTTGTAGGCAGATAAACTCATTTGTTGATGCATGGTTAGGGATTTTTGAGTTATACAAGATGTCACAAAAACAAAGGCTAGTGCTGGCCTTTGATTGATTGTATTTACTCAGTGCAAGAAATTGGAAAGTCGTTTCGTCAATAATACTAGGATACCTGATTGT]
[+] EMBL AK120032 [CTCCCGCTCGCCGAAACCCTCGCCGTCGCCGCGCCATGGCCGCCGCCGCCGATGCTCCCCCGCCTCCTCCGGAGGTCGCCCCGCCCGCGCCCGCGCCCGCCCCCGCGCCGGCGCCATATCAGCCGCCGCGGCTGGCGGTGGCCGACGGAGCGGGAGGTGGCGGCGGCGGCGGCGGGAAGCCGTGCAGGCACCACGCGTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCACCAACTTCGTGGCGCTGTACGACCGGGAGGACGTGGAGTCGGTGGGGCTGGACGACGCGGCGAGGCGGCTGGGCGTCGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCATCGGGATGCTCGTGAGGAGGGCCAAGAATCGGTATACGTGGATCGGCTTCGGTGGAGTCCCTGCGGCGCTCGCGAAACTCAAGGAGATGTCACTGAGGGCGGTGTCAAGCGTGGCGTCACCGTCGCTGGATGAAACATCTGCTGCTAATGTCTCGGATGATGAGGATGATGACAAGTTAGATGATGCTGAGGGCGATGCGGAGAGCGAGAAGCTCAGCCTCAGCCAGTCCATTGACAATCCTTCTGATAAGCCTGATGCACCCCCTTGCAAGCTTCGATCCGAGCATAGGAAGGAGAAGTCCCTTGGGCTGCTCACTCAGAATTTTGTCAAGCTCTTCCTCACCATGGAGATTGAGACGATCTCACTTGATGAAGCCGCAAAGCGGCTCCTTGGAGAGGGACATGCGGCGAACAATATGAGAACCAAAGTTCGGCGATTGTACGATATTGCCAATGTGCTGTCTTCTTTGAATCTTATTGAGAAGACACAACAGGCGGACTCAAGAAAACCTGCATTCCGGTGGCTGGGCCAGGCAAAACGGAATGAAGGCGTCACGGTTGCTTTACCCCCAACCAAGACGTTGCCTAACAAGAGAGCATTTGGTACTGATCTGACTAACATTGACAATAAGAGGGGTAAGTTGGACTCCACAATGGAGAACAGAGGCAAGCCCACGCAGGATGGTGGCAACCTATTCAATAATTTGCAGAGGCAATTAGGGCAAGAGAACAGGAGCGATTTTGCTTATGGCCCCTTCCACCCTGCTGTTGCAAGGAAACAAGAACATGGTAATCGCACAGTACAAGAGAAGGAGAGGAAGAGCATTCAAGACTGGGAGAACCTTGCTTCTTCTTTCCGTCCGCAATATCAAAATCCAGGACTGAACGATCTTTTTGGCCACTACATGGAAGCAAGGAGGTCATGGTACTCGGATCTCAGGCGAGACAGAGCATCATAAAACCAGATTCAGGCCGGTCCGTTGTAAACAAAATTCTTGTAGGCAGATAAACTCATTTGTTGATGCATGGTTAGGGATTTTTGAGTTATACAAGATGTCACAAAAACAAAGGCTAGTGCTGGCCTTTGATTGATTGTATTTACTCAGTGCAAGAAATTGGAAAGTCGTTTCGTCAATAATACTAGGATACCTGATTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1373#0 ACCAAGATCCAATCCTCGCGAGCAGAATCGATGGCG-ACGGCGGCGGTGATGGCTGCTGT 59
consensus_1373#1 -----CTCCCGCTCGCCGAAACCCTCGCCGTCGCCGCGCCATGGCCGCCGCCGCCGATGC 55
** ** ** * * ** * ** * *** * ** * **
consensus_1373#0 ACCCTCGTCTTCGCCGG---CCGACGCGGCGGAGGCTGTGGTTATGACGGAGGCGATGCC 116
consensus_1373#1 TCCCCCGCCTCCTCCGGAGGTCGCCCCGCCCGCGCCCGCGCCCGCCCCCGCGCCGGCGCC 115
*** ** ** * **** ** * ** * * * * * * * * * ** ***
consensus_1373#0 TTCTCTCCCGCAACGCC----AGCAGCCGGTGTT--------CGTCGAGGGCAGAGGCGG 164
consensus_1373#1 ATATCAGCCGCCGCGGCTGGCGGTGGCCGACGGAGCGGGAGGTGGCGGCGGCGGCGGCGG 175
* ** **** ** * * **** * * ** *** * *****
consensus_1373#0 GAAGCTGCGTG---ACCACGCCTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCTC 221
consensus_1373#1 GAAGCCGTGCAGGCACCACGCGTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCAC 235
***** * * ******* ************************************ *
consensus_1373#0 CAATTTCGTCGCTCTGTACAACCGCGACGACGTGGAGTCTATCGGGCTGGACGACGCGGC 281
consensus_1373#1 CAACTTCGTGGCGCTGTACGACCGGGAGGACGTGGAGTCGGTGGGGCTGGACGACGCGGC 295
*** ***** ** ****** **** ** *********** * *****************
consensus_1373#0 TAGGAGGCTCGGCGTGGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCGT 341
consensus_1373#1 GAGGCGGCTGGGCGTCGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCAT 355
*** **** ***** ****************************************** *
consensus_1373#0 AGGGATCCTCGTGAGGAAGGCCAAGAATCGTTATTCTTGGATAGGCTTCGGCGGCGTCCC 401
consensus_1373#1 CGGGATGCTCGTGAGGAGGGCCAAGAATCGGTATACGTGGATCGGCTTCGGTGGAGTCCC 415
***** ********** ************ *** * ***** ******** ** *****
consensus_1373#0 AATGGCATTGCGAGAACTCAAGGAGAGGGCATTGAGAGAGAAGTCTGGATTGGCTCCTCT 461
consensus_1373#1 TGCGGCGCTCGCGAAACTCAAGGAGATGTCACTGAGGGCGGTGTCAAGCGTGGCGTCACC 475
*** * ************ * ** **** * * *** * **** * *
consensus_1373#0 GCCCGTGGAGGAGCCGTCTGCAGCCATTATGTCGGATGACGAAGATGAAGATAAGATGGG 521
consensus_1373#1 GTCGCTGGATGAAACATCTGCTGCTAATGTCTCGGATGATGAGGATGATGACAAGTTAGA 535
* * **** ** * ***** ** * * * ******** ** ***** ** *** * *
consensus_1373#0 TGACGCTGATGGTGATACCGAGAGCGAGAAGCTGAG--TCAACCAGT----TGACAACCC 575
consensus_1373#1 TGATGCTGAGGGCGATGCGGAGAGCGAGAAGCTCAGCCTCAGCCAGTCCATTGACAATCC 595
*** ***** ** *** * ************** ** *** ***** ****** **
consensus_1373#0 TTCTGACAACAAGCCAGGCGCACCTCGCTGCCGGCTTAGATCTGACCATAGGAAGGAGAA 635
consensus_1373#1 TTCTGAT---AAGCCTGATGCACCCCCTTGCAAGCTTCGATCCGAGCATAGGAAGGAGAA 652
****** ***** * ***** * *** **** **** ** **************
consensus_1373#0 GTCGCTTGGGTTGCTCACGCAGAATTTCGTGAAACTCTTCCTGACCATGGAGGTTGACAC 695
consensus_1373#1 GTCCCTTGGGCTGCTCACTCAGAATTTTGTCAAGCTCTTCCTCACCATGGAGATTGAGAC 712
*** ****** ******* ******** ** ** ******** ********* **** **
consensus_1373#0 AATCTCACTTGATGAAGCTGCAAAGCTGCTACTTGGAGAAGGTCACGCAGAGAACAGTAT 755
consensus_1373#1 GATCTCACTTGATGAAGCCGCAAAGCGGCTCCTTGGAGAGGGACATGCGGCGAACAATAT 772
***************** ******* *** ******** ** ** ** * ***** ***
consensus_1373#0 GAGAACTAAAGTCCGGAGACTGTATGACATTGCTAACGTGCTGTCATCACTGAATTTCAT 815
consensus_1373#1 GAGAACCAAAGTTCGGCGATTGTACGATATTGCCAATGTGCTGTCTTCTTTGAATCTTAT 832
****** ***** *** ** **** ** ***** ** ******** ** ***** * **
consensus_1373#0 TGATAAGATACAACAGGCAGACTCAAGGAAACCTGCATTCCGGTGGTTGGGCTCAGCGGG 875
consensus_1373#1 TGAGAAGACACAACAGGCGGACTCAAGAAAACCTGCATTCCGGTGGCTGGGC----CAGG 888
*** **** ********* ******** ****************** ***** * **
consensus_1373#0 GAAACCAAAAGCTGAAAATGGTGTCACAATCGCAGTACCTCCACCAGGGAAGACCATATC 935
consensus_1373#1 CAAAACGGAA--TGAA---GGCGTCACGGTTGCTTTACCCCCAAC---CAAGACGTTGCC 940
*** * ** **** ** ***** * ** **** *** * ***** * *
consensus_1373#0 GAACAAGAGAGCATTTGGGACTGAACTCACTAACATTGACATAAACAGAAGCAGACTGGA 995
consensus_1373#1 TAACAAGAGAGCATTTGGTACTGATCTGACTAACATTGACAATAAGAGGGGTAAGTTGGA 1000
***************** ***** ** ************* ** ** * * ****
consensus_1373#0 CTCAACAATCCCAAAGAAAGCAAAGCTGACACTGAGTGGTGGTGAAATTTTGAAGAACTG 1055
consensus_1373#1 CTCCACAATGGAGAACAGAGGCAAGCCCACGCAGGATGGTGGCAACCTATTCAATAATT- 1059
*** ***** ** * ** **** ** * * ****** * * ** ** ** *
consensus_1373#0 CAAATTGTCAGTGCAGAAACAGCTCGGGCAGGGTAGCAAGGGTGGTTTTGTTTATGGGCC 1115
consensus_1373#1 -----------TGCAGAGGCAATTAGGGCAAGAGAACAGGAGCGATTTTGCTTATGGCCC 1108
****** ** * ***** * * ** * * * ***** ****** **
consensus_1373#0 TTTCCACCCTGCTGGTGCAAGAAAACAAGAGCTTGACAATGGTA----ATAAAGGACACA 1171
consensus_1373#1 CTTCCACCCTGCTGTTGCAAGGAAACAAGAACATGGTAATCGCACAGTACAAGAGAAGGA 1168
************* ****** ******** * ** *** * * * ** ** *
consensus_1373#0 CAG--ATAATGTTCAAAACTGGGAGAGCCTTGCTGCTTCATTTCGACCACAATACCAGAA 1229
consensus_1373#1 GAGGAAGAGCATTCAAGACTGGGAGAACCTTGCTTCTTCTTTCCGTCCGCAATATCAAAA 1228
** * * ***** ********* ******* **** ** ** ** ***** ** **
consensus_1373#0 CCAAGCATTGGGCGATCTTTTTGCTCATTATGTGGAAGCCTGGAAATCGTGGTACTCTGA 1289
consensus_1373#1 TCCAGGACTGAACGATCTTTTTGGCCACTACATGGAAGCAAGGAGGTCATGGTACTCGGA 1288
* ** * ** *********** ** ** ******* *** ** ******** **
consensus_1373#0 ATTTGCGCAAGGCAGCAGCATGATGCAGCAGCACTTTGGCATGCCTGTCATTAACCAG-T 1348
consensus_1373#1 TCTCAGGCGAGACAG-AGCATCATAAAACCAGATTCAGGCCGGTCCGTTGTAAACAAAAT 1347
* ** ** *** ***** ** * * * * *** * * ** * *** * *
consensus_1373#0 TTTTGTAGTCAAATCATTAATCTCAAGCACTGTATTTCTTACCGCGTGCTT-GGGATTTT 1407
consensus_1373#1 TCTTGTAGGCAGAT----AAACTCA---------TTTGTTGATGCATGGTTAGGGATTTT 1394
* ****** ** ** ** **** *** ** ** ** ** ********
consensus_1373#0 --ACCTGTACAATTTGTCAGAAAATGAGGGAACAAAGACATGACCTAGGCCTAGGATCCA 1465
consensus_1373#1 TGAGTTATACAAGATGTCACAAAA-------ACAAAGGCTAGTGCT-GGCCTTTGATTGA 1446
* * ***** ***** **** ****** * * ** ***** *** *
consensus_1373#0 TTGTATTTACTCAATGCAGGAAATATCCAGGCTATTCAGTCCAAAAGATAAACTCGCCTC 1525
consensus_1373#1 TTGTATTTACTCAGTGCAAGAAATTGGAAAGTCGTTTCGTCAATAATACTAGGATACCTG 1506
************* **** ***** * * ** *** * ** * * ***
consensus_1373#0 ATTGTTAGGCATGTAACTGTTAATTCATCTAGCTATA 1562
consensus_1373#1 ATTGT-------------------------------- 1511
*****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||