cluster # 13734

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Oryza sativa
cluster # 13734 cluster # 13734 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13734#0 length = 1541 sequences # 10

consensus_13734#1 length = 759 sequences # 2
consensus_13734#2 length = 687 sequences # 2

consensusID : consensus_13734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1541
fasta sequence

                              [GGCGGGAAACTTATCCTGCTTTTGCCTTGCCCCCGTGTCTTCGCCACGCCAGCCGCCCCCCGCCTGCCGACGAGGCCGCGGCCGCTGCTCAGTTCAGGCTCAGCTCGAGGGGATCGTGCGGTTGGTTGCGCGAAGCGGCGGCGAGAAATGGCGGGCGCGAGCTTCCTCTCGACCGTGCGGCAGCCTCCCGCGCCGCCGCCGCCGCTGCTCGCCCCACGCGGCTCCGCTTCCTCCGTCTCGTCTCCCGCGCGACGGCACGCCCACATTCTGGTGTGCTGCCATGCTACCGCGCAGGAAGAGCCTGTGCGATTCCGTAGAAGGGATTTAATCGGCGGCTGCTTGACTACTGCCATTGGCTTGGAATTAGTCGAGGGCTCTACAGGATTCACAGGAGTGGCTACTGCAGCTGATCTGATTGAGCGTCGACAACGCTCTGAATTCCAATCAAGCATCAAAAGCACCCTCGCCACAGCCATAACGGCTAAAAAAGAGCTCATTCCATCTTTGTTGACGTTGGCACTGAATGATGCCATGACATATGATAAGGCCACGAAGTCAGGAGGTCCAAATGGATCGGTCAGGCTAAGTGCAGAAATAAGCAGACCTGAAAACAGTGGACTTTCTGCTGCTGTGGATCTGCTAGTTGAAGCGAAAAAGGAGATAGATTCCTACTCCAAGGGAGGACCCATTGCATTTGCAGATCTGATCCAATTTGCAGCACAATCAGCACTCAAGCTAACATTCGTTGATGCGGCCATTGCCAAATGTGGCGGGAACGAAGAAAAAGGAAGAACACTATACTCAGCTTATGGTTCAAATGGCCAGTGGGGTTTATTCGACAAACTGTTCGGGCGACAAGATACACAGGAACCTGATCCTGAAGGAAGGGTACCTGACTGGAGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTTTGGGTCCTCGTCAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACACGGCAATAAGTACGGCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTCTGAACTTCAAGAATCAGACATGATGATTTCCATGAGTTGTGTTCTGTAAATTCTCTTACTTGTATAATGTGAAGAGGCAATAGCAGCCAAGTGGAGTAATAGACAATACTGTTTCTTCAACAGTTCTCCAATATACCACCATATCGCTATGCGGTAT]

[+] EMBL AK069838             [GGCGGGAAACTTATCCTGCTTTTGCCTTGCCCCCGTGTCTTCGCCACGCCAGCCGCCCCCCGCCTGCCGACGAGGCCGCGGCCGCTGCTCAGTTCAGGCTCAGCTCGAGGGGATCGTGCGGTTGGTTGCGCGAAGCGGCGGCGAGAAATGGCGGGCGCGAGCTTCCTCTCGACCGTGCGGCAGCCTCCCGCGCCGCCGCCGCCGCTGCTCGCCCCACGCGGCTCCGCTTCCTCCGTCTCGTCTCCTGCGCGACGGCACGCCCACATTCTGGTGTGCTGCCATGCTACCGCGCAGGAAGAGCCTGTGCGATTCCGTAGAAGGGATTTAATCGGCGGCTGCTTGACTACTGCCATTGGCTTGGAATTAGTCGAGGGCTCTACAGGATTCACAGGAGTGGCTACTGCAGCTGATCTGATTGAGCGTCGACAACGCTCTGAATTCCAATCAAGCATCAAAAGCACCCTCGCCACAGCCATAACGGCTAAAAAAGAGCTCATTCCATCTTTGTTGACGTTGGCACTGAATGATGCCATGACATATGATAAGGCCACGAAGTCAGGAGGTCCAAATGGATCGGTCAGGCTAAGTGCAGAAATAAGCAGACCTGAAAACAGTGGACTTTCTGCTGCTGTGGATCTGCTAGTTGAAGCGAAAAAGGAGATAGATTCCTACTCCAAGGGAGGACCCATTGCATTTGCAGATCTGATCCAATTTGCAGCACAATCAGCACTCAAGCTAACATTCGTTGATGCGGCCATTGCCAAATGTGGCGGGAACGAAGAAAAAGGAAGAACACTATACTCAGCTTATGGTTCAAATGGCCAGTGGGGTTTATTCGACAAACTGTTCGGGCGACAAGATACACAGGAACCTGATCCTGAAGGAAGGGTACCTGACTGGAGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTTTGGGTCCTCGTCAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACACGGCAATAAGTACGGCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTCTGAACTTCAAGAATCAGACATGATGATTTCCATGAGTTGTGTTCTGTAAATTCTCTTACTTGTATAATGTGAAGAGGCAATAGCAGCCAAGTGGAGTAATAGACAATACTGTTTCTTCAACAGTTCTCCAATATACCACCATATCGCTATGCGGTAT]
[+] EMBL AK121197             [           TATCCTGCTTTTGCCTTGCCCCCGTGTCTTCGCCACGCCAGCCGCCCCCCGCCTGCCGACGAGGCCGCGGCCGCTGCTCAGTTCAGGCTCAGCTCGAGGGGATCGTGCGGTTGGTTGCGCGAAGCGGCGGCGAGAAATGGCGGGCGCGAGCTTCCTCTCGACCGTGCGGCAGCCTCCCGCGCCGCCGCCGCCGCTGCTCGCCCCACGCGGCTCCGCTTCCTCCGTCTCGTCTCCCGCGCGACGGCACGCCCACATTCTGGTGTGCTGCCATGCTACCGCGCAGGAAGAGCCTGTGCGATTCCGTAGAAGGGATTTAATCGGCGGCTGCTTGACTACTGCCATTGGCTTGGAATTAGTCGAGGGCTCTACAGGATTCACAGGAGTGGCTACTGCAGCTGATCTGATTGAGCGTCGACAACGCTCTGAATTCCAATCAAGCATCAAAAGCACCCTCGCCACAGCCATAACGGCTAAAAAAGAGCTCATTCCATCTTTGTTGACGTTGGCACTGAATGATGCCATGACATATGATAAGGCCACGAAGTCAGGAGGTCCAAATGGATCGGTCAGGCTAAGTGCAGAAATAAGCAGACCTGAAAACAGTGGACTTTCTGCTGCTGTGGATCTGCTAGTTGAAGCGAAAAAGGAGATAGATTCCTACTCCAAGGGAGGACCCATTGCATTTGCAGATCTGATCCAATTTGCAGCACAATCAGCACTCAAGCTAACATTCGTTGATGCGGCCATTGCCAAATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB655783             [                                        TCGCCACGCCAGCCGCCCCCCGCCTGCCGACGAGGCCGCGGCCGCTGCTCAGTTCAGGCTCAGCTCGAGGGGATCGTGCGGTTGGTTGCGCGAAGCGGCGGCGAGAAATGGCGGGCGCGAGCTTCCTCTCGACCGTGCGGCAGCCTCCCGCGCCGCCGCCGCCGCTGCTCGCCCCACGCGGCTCCGCTTCCTCCGTCTCGTCTCCCGCGCGACGGCACGCCCACATTCTGGTGTGCTGCCATGCTACCGCGCAGGAAGAGCCTGTGCGATTCCGTAGAAGGGATTTAATCGGCGGCTGCTTGACTACTGCCATTGGCTTGGAATTAGTCGAGGGCTCTACAGGATTCACAGGAGTGGCTACTGCAGCTGATCTGATTGAGCGTCGACAACGCTCTGAATTCCAATCAAGCATCAAAAGCACCCTCGCCACAGCCATAACGGCTAAAAAAGAGCTCATTCCATCTTTGTTGACGTTGGCACTGAATGATGCCATGACATATGATAAGGCCACGAAGTCAGGAGGTCCAAATGGATCGGTCAGGCTAAGTGCAGAAATAAGCAGACCTGAAAACAGTGGACTTTCTGCTGCTGTGGATCTGCTAGTTGAAGCGAAAAAGGAGATAGATTCCTACTCCAAGGGAGGACCCATTGCATTTGCAGATCTGATCCAATTTGCAGCACAATCAGCACTCAAGCTAACATTCGTTGATGCGGCCATTGCCAAATGTGGCGGGAACGAAGAANAAGGAAGAACACTATACTCAGCTTATGGTTCAAATGGCCAGTGGGGTTTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF326751             [                                                                              aGGCCGCTGCTCAGTTCAGGCTCAGCTCGAGGGGATCGTGCGGTTGGTTGCGCGAAGCGGCGGCGAGAAATGGCGGGCGCGAGCTTCCTCTCGACCGTGCGGCAGCCTCCCGCGCCGCCGCCGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF326484             [                                                                                    CTGCTCAGTTCAGGCTCAGCTCGAGGGGATTGTGCGGTTGGTTGCGCGAAGCGGCGGCGAGAAATGGCGGGCGCGAGCTTCCTCTCGACCGTGCGGCAGCCTCCCGCGCCGCCGCCGCCGCTGCTCGCCCCACGCGGCTCCGCTTCCTCCGTCTCGTCTCCCGCGCGACGGCACGCCCACATTCTGGTGTGCTGCCATGCTACCGCGCAGGAAGAGCCTGTGCGATTCCGTAGAAGGGATTTAATCGGCGGCTGCTTGACTACTGCCATTGGCTTGGAATTAGTCGAGGGCTCTACAGGATTCACAGGAGTGGCTACTGCAGCTGATCTGATTGAGCGTCGACAACGCTCTGAATTCCAATCAAGCATCAAAAGCACCCTCGCCACAGCCATAACGGCTAAAAAAGAGCTCATTCCATCTTTGTTGACGTTGGCACTGAATGATGCCATGACATATGATAAGGCCACGAAGTCAGGAGGTCCAAATGGATCGGTCAGGCTAAGTGCAGAAATAAGCAGACCTGAAAACAGTGGACTTTCTGCTGCTGTGGATCTGCTAGTTGAAGCGAAAAAGGAGATAGATTCCTACTCCAAGGGAGGACCCATTGCATTTGCAGATCTGATCCAATTTGCAGCACAATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BF430571             [                                                                                                                                        GGCGGCGAGAAATGGCGGGCGCGAGCTTCCTCTCGACCGTGCGGCAGCCTCCCGCGCCGCCGCCGCCGCTGCTCGCCCCACGCGGCTCCGCTTCCTCCGTCTCGTCTCCCGCGCGACGGCACGCCCACATTCTGGTGTGCTGCCATGCTACCGCGCAGGAAGAGCCTGTGCGATTCCGTAGAAGGGATTTAATCGGCGGCTGCTTGACTACTGCCATTGGCTTGGAATTAGTCGAGGGCTCTACAGGATTCACAGGAGTGGCTACTGCAGCTGATCTGATTGAGCGTCGACAACGCTCTGAATTCCAATCAAGCATCAAAAGCACCCTCGCCACAGCCATAACGGCTAAAAAAGAGCTCATTCCATCTTTGTTGACGTTGGCACTGAATGATGCCATGACATATGATAAGGCCACGAAGTCAGGAGGTCCAAATGGATCGGTCAGGCTAAGTGCAGAAATAAGCAGACCTGAAAACAGTGGACTTTCTGCTGCTGTGGATCTGCTAGTTGAAGCGAAAAAGGAGATAGATTCCTACTCCAAGGGAGGACCCATTGCATTTGCAGATCTGATCCAATTTGCAGCACAATCAGCACTCAAGCTAACATTCGTTGATGCGGCCATTGCCAAATGTGGCGGGAACGAAGAAAAAGGAAGAACACTATACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB662263             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGATTCCTACTCCAAGGGAGGACCCATTGCATTTGCAGATCTGATCCAATTTGCAGCACAATCAGCACTCAAGCTAACATTCGTTGATGCGGCCATTGCCAAATGTGGCGGGAACGAAGAAAAAGGAAGAACACTATACTCAGCTTATGGTTCAAATGGCCAGTGGGGTTTATTCGACAAACTGTTCGGGCGACAAGATACACAGGAACCTGATCCTGAAGGAAGGGTACCTGACTGGAGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTTTGGGTCCTCGTCAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGATTAGGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACACGTCCCCTAAGCAAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATCCAGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACACGGCAATAAGTACGGCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTTTGAACTTCAAGAATCAGGCATG                                                                                                                                       ]
[-] EMBL CB655784             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAACACTATACTCAGCTTATGGTTCAAATGGCCAGTGGGGTTTATTCGACAAACTGTTCGGGCGACAAGATACACAGGAACCTGATCCTGAAGGAAGGGTACCTGACTGGAGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTTTGGGTCCTCGTCAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACGAGGTTGCCCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACACGGCAATAAGTACGGCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTCTGAACTTCAAGAATCAGACATGATGATTTCCATGAGTTGTGTTCTGTAAATTCTCTTACTTGTATAATGTGAAGAGGCAATAGCAGCCAAGTGGAGTAATAGACAATACTG                                              ]
[-] EMBL BU673288             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCCAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACACGGCCATAAGTACGGCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTCTGAACTTCAAGAATCAGACATGATGATTTCCATGAGTTGTGTTCTGTAAATTCTCTTACTTGTATAATGTGAAGAGGCCATAGCAGCCCAGTGGAGTAATAGACCATACT                                               ]
[+] EMBL CB683615             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACGGCTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACACGGCAATAAGTACGGCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTCTGAACTTCAAGAATCAGACATGATGATTTCCATGAGTTGTGTTCTGTAAATTCTCTTACTTGTATAATGTGAAGAGGCAATAGCAGC                                                                      ]




>consensus_13734#0
GGCGGGAAACTTATCCTGCTTTTGCCTTGCCCCCGTGTCTTCGCCACGCCAGCCGCCCCC
CGCCTGCCGACGAGGCCGCGGCCGCTGCTCAGTTCAGGCTCAGCTCGAGGGGATCGTGCG
GTTGGTTGCGCGAAGCGGCGGCGAGAAATGGCGGGCGCGAGCTTCCTCTCGACCGTGCGG
CAGCCTCCCGCGCCGCCGCCGCCGCTGCTCGCCCCACGCGGCTCCGCTTCCTCCGTCTCG
TCTCCCGCGCGACGGCACGCCCACATTCTGGTGTGCTGCCATGCTACCGCGCAGGAAGAG
CCTGTGCGATTCCGTAGAAGGGATTTAATCGGCGGCTGCTTGACTACTGCCATTGGCTTG
GAATTAGTCGAGGGCTCTACAGGATTCACAGGAGTGGCTACTGCAGCTGATCTGATTGAG
CGTCGACAACGCTCTGAATTCCAATCAAGCATCAAAAGCACCCTCGCCACAGCCATAACG
GCTAAAAAAGAGCTCATTCCATCTTTGTTGACGTTGGCACTGAATGATGCCATGACATAT
GATAAGGCCACGAAGTCAGGAGGTCCAAATGGATCGGTCAGGCTAAGTGCAGAAATAAGC
AGACCTGAAAACAGTGGACTTTCTGCTGCTGTGGATCTGCTAGTTGAAGCGAAAAAGGAG
ATAGATTCCTACTCCAAGGGAGGACCCATTGCATTTGCAGATCTGATCCAATTTGCAGCA
CAATCAGCACTCAAGCTAACATTCGTTGATGCGGCCATTGCCAAATGTGGCGGGAACGAA
GAAAAAGGAAGAACACTATACTCAGCTTATGGTTCAAATGGCCAGTGGGGTTTATTCGAC
AAACTGTTCGGGCGACAAGATACACAGGAACCTGATCCTGAAGGAAGGGTACCTGACTGG
AGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTTTGGGTCCTCGT
CAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTG
ATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTC
TCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGG
CAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTG
AAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACG
AAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATT
TTTACACGGCAATAAGTACGGCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCT
TTTCTGAACTTCAAGAATCAGACATGATGATTTCCATGAGTTGTGTTCTGTAAATTCTCT
TACTTGTATAATGTGAAGAGGCAATAGCAGCCAAGTGGAGTAATAGACAATACTGTTTCT
TCAACAGTTCTCCAATATACCACCATATCGCTATGCGGTAT

consensusID : consensus_13734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 759
fasta sequence

                              [CCATTGCATTTGCAGATCTGATCCAATTTGCAGCACAATCAGCACTCAAGCTAACATTCGTTGATGCGGCCATTGCCAAATGTGGCGGGAACGAAGAAAAAGGAAGAACACTATACTCAGCTTATGGTTCAAATGGCCAGTGGGGTTTATTCGACAAACTGTTCGGGCGACAAGATACACAGGAACCTGATCCTGAAGGAAGGGTACCTGACTGGAGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTTTGGGTCCTCGTCAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACACGGCAATAAGTACGGCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTTTGAACTTCAAGAATCAGACATGATGATTTCCAAAAAAAAAAAAAAAAAAAATTAAAAAGG]

[-] EMBL CB662264             [CCATTGCATTTGCAGATCTGATCCAATTTGCAGCACAATCAGCACTCAAGCTAACATTCGTTGATGCGGCCATTGCCAAATGTGGCGGGAACGAAGAAAAAGGAAGAACACTATACTCAGCTTATGGTTCAAATGGCCAGTGGGGTTTATTCGACAAACTGTTCGGGCGACAAGATACACAGGAACCTGATCCTGAAGGAAGGGTACCTGACTGGAGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTTTGGGTCCTCGTCAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACACGGCAATAAGTACGGCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTTTGAACTTCAAGAATCAGACATGATGATTTCCAAAAAAAAAAAAAAAAAAAATTAAAAAGG]
[+] EMBL CF195924             [                                                                                               GAAAAAGGAAGAACACTATACTCAGCTTATGGTTCAAATGGCCAGTGGGGTTTATTCGACAAACTGTTCGGGCGACAAGATACACAGGAACCTGATCCTGAAGGAAGGGTACCTGACTGGAGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTTTGGGTCCTCGTCAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACNNNNNTGACCTGATAACCACGCTCAC AAGCTGAnnn                                                                                                                                                                                                                                                                                                                        ]




>consensus_13734#1
CCATTGCATTTGCAGATCTGATCCAATTTGCAGCACAATCAGCACTCAAGCTAACATTCG
TTGATGCGGCCATTGCCAAATGTGGCGGGAACGAAGAAAAAGGAAGAACACTATACTCAG
CTTATGGTTCAAATGGCCAGTGGGGTTTATTCGACAAACTGTTCGGGCGACAAGATACAC
AGGAACCTGATCCTGAAGGAAGGGTACCTGACTGGAGCAAAGCTTCTGTGCAGGAAATGA
AGGATAAGTTCGTCGCAGTTGGTTTGGGTCCTCGTCAGCTTGCTGTGATGTCAGTCTTCC
TGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTGATAGCCGACAAGGATTGCCGCCCAT
GGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACGAGGTTGACC
TGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACA
CGTACCCTAAGCAAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGAT
CATCTCTCAGTCTCGGTGATGCTGATACAGTAACGAAGAGCTTCATTTGTTTGCCTAAGA
AGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACACGGCAATAAGTACGGCATG
TATAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTTTGAACTTCAAGAATCAGACAT
GATGATTTCCAAAAAAAAAAAAAAAAAAAATTAAAAAGG

consensusID : consensus_13734#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 687
fasta sequence

                              [TTATTGCCAAACTGTTGGGGGGCAAGATACACAGGAACCTGATCCTGAAGGAAGGGTCCCTGCCTGGAGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTGTGGGTCCTCGTCAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGG-AGGAACGGTTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACA-CGGCAATAAGTACGGCATGTACAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTCTGAACTTCAAGAATCAGACATGATGATTTCCCTGAGTTGTGTTCTGTAAATTCTCTTACTTGTATAATGTGAAGAGGCAATAGCAGCCAAGTGGAGTAATAGAC-AATACTGTTTCTTCAAAAAAAAAAAAGAAAAA]

[-] EMBL CA762991             [TTATTGCCAAACTGTTGGGGGGCAAGATACACAGGAACCTGATCCTGAAGGAAGGGTCCCTGCCTGGAGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTGTGGGTCCTCGTCAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGG AGGAACGGTTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACA CGGCAATAAGTACGGCATGTACAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTCTGAACTTCAAGAATCAGACATGATGATTTCCCTGAGTTGTGTTCTGTAAATTCTCTTACTTGTATAATGTGAAGAGGCAATAGCAGCCAAGTGGAGTAATAGAC AATACTGTTTCTTCAAAAAAAAAAAAGAAAA ]
[+] EMBL BI812423             [                                                                                                                                                                            ACGGAAGAAACGGTTGATA CCGACAAGGAT  CCGCCCATGGGTCGAGAAGTATCAACCCAGTCGCGAGAC GTCTCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAA CTGAGCTCCCTT GGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCCAAAGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTT GCAGTGACATTCCGACATTTTTACACCGGCAATAAGTACGGCATGTATAGATGGTTTAGATCCCCTGTTCCCTTCGCTCTTTTCTGAACTTCAAGAATCAGACATGATGATTTCCATGA TTGTGTTCTGTAAATTCTCTTACTTGTATAATGTGAAGA GCAATA CA CCAAGTGGAGTAATAGACAAATACTGTTTCTTCAAAACACCAAAAAAAAAA]




>consensus_13734#2
TTATTGCCAAACTGTTGGGGGGCAAGATACACAGGAACCTGATCCTGAAGGAAGGGTCCC
TGCCTGGAGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTGTGGG
TCCTCGTCAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGA
ACGGTTGATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGA
GACGGTCTCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTC
CCTTGGGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGG
TAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATAC
AGTAACGAAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTC
CGACATTTTTACACGGCAATAAGTACGGCATGTACAGATGGTTTAGATTCACTGTTCCCT
TCGCTCTTTTCTGAACTTCAAGAATCAGACATGATGATTTCCCTGAGTTGTGTTCTGTAA
ATTCTCTTACTTGTATAATGTGAAGAGGCAATAGCAGCCAAGTGGAGTAATAGACAATAC
TGTTTCTTCAAAAAAAAAAAAGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13734#0      GGCGGGAAACTTATCCTGCTTTTGCCTTGCCCCCGTGTCTTCGCCACGCCAGCCGCCCCC 60
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      ------------------------------------------------------------
                                                                                   

consensus_13734#0      CGCCTGCCGACGAGGCCGCGGCCGCTGCTCAGTTCAGGCTCAGCTCGAGGGGATCGTGCG 120
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      ------------------------------------------------------------
                                                                                   

consensus_13734#0      GTTGGTTGCGCGAAGCGGCGGCGAGAAATGGCGGGCGCGAGCTTCCTCTCGACCGTGCGG 180
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      ------------------------------------------------------------
                                                                                   

consensus_13734#0      CAGCCTCCCGCGCCGCCGCCGCCGCTGCTCGCCCCACGCGGCTCCGCTTCCTCCGTCTCG 240
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      ------------------------------------------------------------
                                                                                   

consensus_13734#0      TCTCCCGCGCGACGGCACGCCCACATTCTGGTGTGCTGCCATGCTACCGCGCAGGAAGAG 300
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      ------------------------------------------------------------
                                                                                   

consensus_13734#0      CCTGTGCGATTCCGTAGAAGGGATTTAATCGGCGGCTGCTTGACTACTGCCATTGGCTTG 360
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      ------------------------------------------------------------
                                                                                   

consensus_13734#0      GAATTAGTCGAGGGCTCTACAGGATTCACAGGAGTGGCTACTGCAGCTGATCTGATTGAG 420
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      ------------------------------------------------------------
                                                                                   

consensus_13734#0      CGTCGACAACGCTCTGAATTCCAATCAAGCATCAAAAGCACCCTCGCCACAGCCATAACG 480
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      ------------------------------------------------------------
                                                                                   

consensus_13734#0      GCTAAAAAAGAGCTCATTCCATCTTTGTTGACGTTGGCACTGAATGATGCCATGACATAT 540
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      ------------------------------------------------------------
                                                                                   

consensus_13734#0      GATAAGGCCACGAAGTCAGGAGGTCCAAATGGATCGGTCAGGCTAAGTGCAGAAATAAGC 600
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      ------------------------------------------------------------
                                                                                   

consensus_13734#0      AGACCTGAAAACAGTGGACTTTCTGCTGCTGTGGATCTGCTAGTTGAAGCGAAAAAGGAG 660
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      ------------------------------------------------------------
                                                                                   

consensus_13734#0      ATAGATTCCTACTCCAAGGGAGGACCCATTGCATTTGCAGATCTGATCCAATTTGCAGCA 720
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      -------------------------CCATTGCATTTGCAGATCTGATCCAATTTGCAGCA 35
                                                                                   

consensus_13734#0      CAATCAGCACTCAAGCTAACATTCGTTGATGCGGCCATTGCCAAATGTGGCGGGAACGAA 780
consensus_13734#2      ------------------------------------------------------------
consensus_13734#1      CAATCAGCACTCAAGCTAACATTCGTTGATGCGGCCATTGCCAAATGTGGCGGGAACGAA 95
                                                                                   

consensus_13734#0      GAAAAAGGAAGAACACTATACTCAGCTTATGGTTCAAATGGCCAGTGGGGTTTATTCGAC 840
consensus_13734#2      ---------------------------------------------------TTATT-GCC 8
consensus_13734#1      GAAAAAGGAAGAACACTATACTCAGCTTATGGTTCAAATGGCCAGTGGGGTTTATTCGAC 155
                                                                          ***** * *

consensus_13734#0      AAACTGTTCGGGCGACAAGATACACAGGAACCTGATCCTGAAGGAAGGGTACCTGACTGG 900
consensus_13734#2      AAACTGTT-GGGGGGCAAGATACACAGGAACCTGATCCTGAAGGAAGGGTCCCTGCCTGG 67
consensus_13734#1      AAACTGTTCGGGCGACAAGATACACAGGAACCTGATCCTGAAGGAAGGGTACCTGACTGG 215
                       ******** *** * *********************************** **** ****

consensus_13734#0      AGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTTTGGGTCCTCGT 960
consensus_13734#2      AGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTGTGGGTCCTCGT 127
consensus_13734#1      AGCAAAGCTTCTGTGCAGGAAATGAAGGATAAGTTCGTCGCAGTTGGTTTGGGTCCTCGT 275
                       ************************************************ ***********

consensus_13734#0      CAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTG 1020
consensus_13734#2      CAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTG 187
consensus_13734#1      CAGCTTGCTGTGATGTCAGTCTTCCTGGGGCCTGACCAAGCTGCCACGGAGGAACGGTTG 335
                       ************************************************************

consensus_13734#0      ATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTC 1080
consensus_13734#2      ATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTC 247
consensus_13734#1      ATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTC 395
                       ************************************************************

consensus_13734#0      TCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGG 1140
consensus_13734#2      TCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGG 307
consensus_13734#1      TCTCGAACTGACTACGAGGTTGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGG 455
                       ************************************************************

consensus_13734#0      CAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTG 1200
consensus_13734#2      CAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTG 367
consensus_13734#1      CAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAAAGATTGACTTGGGTAAATTG 515
                       ************************************************************

consensus_13734#0      AAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACG 1260
consensus_13734#2      AAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACG 427
consensus_13734#1      AAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACG 575
                       ************************************************************

consensus_13734#0      AAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATT 1320
consensus_13734#2      AAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATT 487
consensus_13734#1      AAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATT 635
                       ************************************************************

consensus_13734#0      TTTACACGGCAATAAGTACGGCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCT 1380
consensus_13734#2      TTTACACGGCAATAAGTACGGCATGTACAGATGGTTTAGATTCACTGTTCCCTTCGCTCT 547
consensus_13734#1      TTTACACGGCAATAAGTACGGCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCT 695
                       *************************** ********************************

consensus_13734#0      TTTCTGAACTTCAAGAATCAGACATGATGATTTCCATGAGTTGTGTTCTGTAAATTCTCT 1440
consensus_13734#2      TTTCTGAACTTCAAGAATCAGACATGATGATTTCCCTGAGTTGTGTTCTGTAAATTCTCT 607
consensus_13734#1      TTTTTGAACTTCAAGAATCAGACATGATGATTTCCAAAAAAAAAAAAAAAAAAAATTAAA 755
                       *** *******************************   *            *** *    

consensus_13734#0      TACTTGTATAATGTGAAGAGGCAATAGCAGCCAAGTGGAGTAATAGACAATACTGTTTCT 1500
consensus_13734#2      TACTTGTATAATGTGAAGAGGCAATAGCAGCCAAGTGGAGTAATAGACAATACTGTTTCT 667
consensus_13734#1      AAGG-------------------------------------------------------- 759
                        *                                                          

consensus_13734#0      TCAACAGTTCTCCAATATACCACCATATCGCTATGCGGTAT 1541
consensus_13734#2      TCAAAAAAAAAAAAGAAAAA--------------------- 687
consensus_13734#1      -----------------------------------------