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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1032 fasta sequence
[GGTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC-GTCGACCTCGC-GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC-GTTGGTCGAC-GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC-GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC-CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC-AGACATACAGTGCTAGTGCTATTGCCA-TTGTAAAAAAAAAA]
[+] EMBL AK098972 [GGTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCATATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCC CAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCT ]
[+] EMBL AK105926 [ GTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAGTGCTA ]
[+] EMBL AK067361 [ TCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAG ]
[+] EMBL AK104213 [ CAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTAT ]
[+] EMBL CB681094 [ GATGGTCCTTGGAATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAGCCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCTAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCCACGGGGTGGTGCCGGACGCGGACTGACGCCGGGGAGTTCGCCACGAAAGGCCAGGCTCGTGTTGCAACTGCTGCTGCTTCCGCCGCTGC CAAGTGAa ]
[+] EMBL BI806145 [ TAT GTTTGCG TTTGA GGC GC AC GAGGA GAGA GGCCGCGAA GCCGACGAG CGCT GC GCGATGGC CAGCTGGAGAAGGCGTTC CCGA GT GCC CGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGCCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATACAAGACATACAGTGCTAGTGCTATTGCCATTTGTAAAAAAAAAA]
[-] EMBL CB639275 [ GTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTAGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAGTGCTATTGCCA TTGTAc ]
[+] EMBL BI807651 [ AGGCGTTC CCGAGGTGCACGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCCGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAaaaaaaa ]
[+] EMBL BM038148 [ tcCCGA GT GCACCGAAGAACGGGAA CCCTTCTTC GC GCGACACCGTCGGGTACAGTCGACCTCGCAGCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCAGTTGGTCGACAGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGCACAA GGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGCACAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGT CCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCCGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAGTGCTAaaaaaaaaa ]
consensusID : consensus_13739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 980 fasta sequence
[TCCGACAAAACCTCATCTAGAGCATCGAGCTGAGAGGTAAGGAAGAGAAGAAAACAATGGCGGGGAAAGACGACGACGTGAAGGTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCGCGTGCGCATCGCGCTCAACATCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAGCCCATCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGTCTGGGCCGCGGCGCCATCCGTCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACAACAACATGTTCCCTGGAATGGCTGGCGTTCTTTTCGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGAGGAGACGCTGGCGGCGTTGGCGCAGCTGGAGAAGGCGTTCGCGGAGTGCGCGGGCGGGAAGGCGTTCTTCGGCGGCGACTCCATCGGGTACGTCGACCTCGCGCTCGGGAGCAACCTGCACTGGTTCGAGGCGCTCCGCAGGTTGTTCGGCGTGGCGCTGCTGGACGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGAAGCGGTTCGTGGAGGCCGAGGCGGCCAAGGGGGTGGTGCCGGACGCTGGTGTGGCGGTGGAGCTCGGCAAGAAGCTGCAGGCTCGTGCAGCAGCGGCTTCCACC-GCTGCCTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGATGGGTTCATGTGAAGATAAAACCGTGCGTTATATTAGAGTGCCATTTGAAGTCTTGTTTAGTTCATTTGTGGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTGTATATATATGTATGCTCTCTGATTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTAAAAAAAAAAA]
[+] EMBL AF402800 [TCCGACAAAACCTCATCTAGAGCATCGAGCTGAGAGGTAAGGAAGAGAAGAAAACAATGGCGGGGAAAGACGACGACGTGAAGGTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCGCGTGCGCATCGCGCTCAACATCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAGCCCATCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGTCTGGGCCGCGGCGCCATCCGTCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACAACAACATGTTCCCTGGAATGGCTGGCGTTCTTTTCGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGAGGAGACGCTGGCGGCGTTGGCGCAGCTGGAGAAGGCGTTCGCGGAGTGCGCGGGCGGGAAGGCGTTCTTCGGCGGCGACTCCATCGGGTACGTCGACCTCGCGCTCGGGAGCAACCTGCACTGGTTCGAGGCGCTCCGCAGGTTGTTCGGCGTGGCGCTGCTGGACGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGAAGCGGTTCGTGGAGGCCGAGGCGGCCAAGGGGGTGGTGCCGGACGCTGGTGTGGCGGTGGAGCTCGGCAAGAAGCTGCAGGCTCGTGCAGCAGCGGCTTCCACC GCTGCCTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGATGGGTTCATGTGAAGATAAAACCGTGCGTTATATTAGAGTGCCATTTGAAGTCTTGTTTAGTTCATTTGTGGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTGTATATATATGTATGCTCTCTGATTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTAAAAAAAAAA ]
[+] EMBL OSS12005A [ CATCTAGAGCATCGAGCTGAGAGGTAAGGAAGAGAAGAAAACAATGGCGGGGAAAGACGACGACGTGAAGGTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCG GTGCGCATCG GTNCAACATCAAGGGCGTGAG TACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAG CCATCTNCGAGTCGNTCGTNATCGTGCAGTACGTCGACGAGGTC ]
[+] EMBL AU088674 [ AGCT CAGGCTCGTGCA CAGCGGCTTCCACCNGCTGCCTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGATGGGTTCATGTGAAGATAAAACCGTGCGTTATATTAGAGTGCCATTTGAAGTCTTGTTTAGTTCATTTGTGGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTGTATATATATGTATGCTCTCTGATTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTGAAAAAAAAAA]
consensusID : consensus_13739#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence
[GGCGTCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGGCGTNNTCGCCGAGGTGGCAGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTCGCGCTCGGTTGCAACCTGCACTNTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCGTTGGTCGACGCCCGGCAAGAACCCCGCTCCCTGGCGCGTGGGCGGAGCGGTTCGTGGAGGGTCAGGCNNGCAAGGGGGGTGGTGCCGGACGCCGGACGACGCCCGGGAGTTCGCCAGGAAAGTCCAGGCTTCGGTAGCAACTTGTGGTTGGTTCCACCGTTGGCAAGTGAGGTGGAAAATCGTTTTCGAATGGGACAATTGGGGTTCCTGGGAATAAAAAAAAAATCGTGGTATTTACAGGGGGCATTTTTCAAGGCAGGGGGTAGGTTTATTTGGGGGGGGTATTAAAAGGGTAAAAGCCTTGGCATTTGATCCGGGGTTTTGTTCTCCCGGGGTCTTCGATATATAAGGGCGTTTCCAAACTACCGGGGGATGGGGTTTTG]
[+] EMBL BE040843 [GGCGTCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGGCGTNNTCGCCGAGGTGGCAGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTCGCGCTCGGTTGCAACCTGCACTNTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCGTTGGTCGACGCCCGGCAAGAACCCCGCTCCCTGGCGCGTGGGCGGAGCGGTTCGTGGAGGGTCAGGCNNGCAAGGGGGGTGGTGCCGGACGCCGGACGACGCCCGGGAGTTCGCCAGGAAAGTCCAGGCTTCGGTAGCAACTTGTGGTTGGTTCCACCGTTGGCAAGTGAGGTGGAAAATCGTTTTCGAATGGGACAATTGGGGTTCCTGGGAATAAAAAAAAAATCGTGGTATTTACAGGGGGCATTTTTCAAGGCAGGGGGTAGGTTTATTTGGGGGGGGTATTAAAAGGGTAAAAGCCTTGGCATTTGATCCGGGGTTTTGTTCTCCCGGGGTCTTCGATATATAAGGGCGTTTCCAAACTACCGGGGGATGGGGTTTTG]
consensusID : consensus_13739#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[CCTGGCAACTTTTCTTCCGAAAGCGATTCCGCCAGGGTTGCACGGGCGTTGGCAGTTGGTCGACGNGCACGGCANAGACCCCGCTCCTGGCAGGCGTGGTCAGGATCAGGTTCGTGGAGGTCAGAGCGGCCAAGGGTGTGTCGGTAGCCAGGACGCAGGACAGACGCCGTGGAGTTCGGCCAGGAAAGTCCAGGCTCAGTGTAGCATGCATGCTGGCTGCTTCACACCGCGTGCCAAGTGAGTGGAAAATCGTTGTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCAGTGTTATTACAGTGCCATTGTTCAAGTGCATGGTTAGTTTATNTTGTGGGGTTATTAATGTGTGAAAGTGCTGGACATGTATGCAGTGTNATGTTCTCCGGTTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATGCCCATGTACNGCTGCTCTAA]
[+] EMBL BQ907921 [CCTGGCAACTTTTCTTCCGAAAGCGATTCCGCCAGGGTTGCACGGGCGTTGGCAGTTGGTCGACGNGCACGGCANAGACCCCGCTCCTGGCAGGCGTGGTCAGGATCAGGTTCGTGGAGGTCAGAGCGGCCAAGGGTGTGTCGGTAGCCAGGACGCAGGACAGACGCCGTGGAGTTCGGCCAGGAAAGTCCAGGCTCAGTGTAGCATGCATGCTGGCTGCTTCACACCGCGTGCCAAGTGAGTGGAAAATCGTTGTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCAGTGTTATTACAGTGCCATTGTTCAAGTGCATGGTTAGTTTATNTTGTGGGGTTATTAATGTGTGAAAGTGCTGGACATGTATGCAGTGTNATGTTCTCCGGTTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATGCCCATGTACNGCTGCTCTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13739#1 ----------------------------TCCGACAAAACCTCATCTAGAGCATCGAGCTG 32
consensus_13739#2 ------------------------------------------------------------
consensus_13739#0 GGTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTC-AGTATCCAGCCG 59
consensus_13739#3 ------------------------------------------------------------
consensus_13739#1 AGAGGTAA-----GGAAGAGAAG----AAAACAATGGCGGGGAAAGACGACGACGTGAAG 83
consensus_13739#2 ------------------------------------------------------------
consensus_13739#0 AGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAG 119
consensus_13739#3 ------------------------------------------------------------
consensus_13739#1 GTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCGCGTGCGCATCGCGCTCAACATCAAG 143
consensus_13739#2 ------------------------------------------------------------
consensus_13739#0 GTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAG 179
consensus_13739#3 ------------------------------------------------------------
consensus_13739#1 GGCGTGAGCTACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACC 203
consensus_13739#2 ------------------------------------------------------------
consensus_13739#0 GGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGC 239
consensus_13739#3 ------------------------------------------------------------
consensus_13739#1 TCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAGCCCATCTCCGAG 263
consensus_13739#2 ------------------------------------------------------------
consensus_13739#0 TCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAG 299
consensus_13739#3 ------------------------------------------------------------
consensus_13739#1 TCGCTCGTCATCGTGCAGTACGTCGACGAGGTCTGGGC---------CGCGGCGCCATCC 314
consensus_13739#2 ------GGCGTCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCC 54
consensus_13739#0 TCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCC 359
consensus_13739#3 ------------------------------------------------------------
consensus_13739#1 GTCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGAC 374
consensus_13739#2 ATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGAC 114
consensus_13739#0 ATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGAC 419
consensus_13739#3 ------------------------------------------------------------
consensus_13739#1 AACAACATGTTCCCTGGAATGGCTGGCGTTCTTTTCGCGGCGACGGAGGAGGAGAGGGCG 434
consensus_13739#2 GACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCG 174
consensus_13739#0 GACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCG 479
consensus_13739#3 ------------------------------------------------------------
consensus_13739#1 GCGAAGGCCGAGGAGACGCTGGCGGCGTTGGCGCAGCTGGAGAAGG---CGTTCGCGGAG 491
consensus_13739#2 GCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGGCGTNNTCGCCGAG 234
consensus_13739#0 GCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGG---CGTTCGCCGAG 536
consensus_13739#3 ------------------------------------------------------------
consensus_13739#1 TGCGCGG------GCGGGAAGGCGTTCTTCGGCGGCGACTCCATCGGGTACGTCGACCTC 545
consensus_13739#2 GTGGCAGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTC 294
consensus_13739#0 GTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTC 596
consensus_13739#3 ------------------------------------------------------------
consensus_13739#1 GCGCTCGGGAGCAACCTGCACTGGTTCGAGGCGCTCCGC--AGGTTGTTCGG-CGT-GGC 601
consensus_13739#2 GCGCTCGGTTGCAACCTGCACTNTCTCGAAGCGATCCGC--AGGTTGCACGG-CGT-GGC 350
consensus_13739#0 GCGCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGC--AGGTTGCACGG-CGT-GGC 652
consensus_13739#3 ------CCTGGCAACTT-TTCTTCCGAAAGCGATTCCGCCAGGGTTGCACGGGCGTTGGC 53
***** * ** * ***** ***** *** *** ***
consensus_13739#1 -GCTGCTGGACGCC---GGCAAGA-CCCCGCTCCTGGC-GGCGTGGGCGAAGC--GGTTC 653
consensus_13739#2 -GTTGGTCGACGCCC--GGCAAGAACCCCGCTCCCTGG-CGCGTGGGCGGAGC--GGTTC 404
consensus_13739#0 -GTTGGTCGACGCC---GGCAAGA-CCCCGCTCCTGGC-GGCGTGGGCGGAGC--GGTTC 704
consensus_13739#3 AGTTGGTCGACGNGCACGGCANAGACCCCGCTCCTGGCAGGCGTGGTCAGGATCAGGTTC 113
* ** * **** **** ********* * ****** * *****
consensus_13739#1 GTGGAGGCCGAGGCGGCCAAGGGGG---TGGTGCC--GGACGCTGG-T-GTGGCGGTGGA 706
consensus_13739#2 GTGGAGGGTCAGGCNNGCAAGGGGGG--TGGTGCC--GGACGCCGGAC-GACGCCCGGGA 459
consensus_13739#0 GTGGAGGTCGAGGCGGCCAAGGGGG---TGGTGCC--GGACGC-GGAC-GACGCCGTGGA 757
consensus_13739#3 GTGGAGGTCAGAGCGGCCAAGGGTGTGTCGGTAGCCAGGACGCAGGACAGACGCCGTGGA 173
******* ** ****** * *** * ****** ** * ** ***
consensus_13739#1 GCTCGGC-AAGAAGCTGCAGGCTC-GTGCAGCA-GCG--------GCTTC-CACCGCTGC 754
consensus_13739#2 GTTCGCC-AGGAAAGTCCAGGCTT-CGGTAGCA-ACTTG-TGGTTGGTTC-CACCGTTGG 514
consensus_13739#0 GTTCGCC-AGGAAAGTCCAGGCTC-GTGTAGCA-GCT-G-CTGCTGCTTC-CACCGCTGC 811
consensus_13739#3 GTTCGGCCAGGAAAGTCCAGGCTCAGTGTAGCATGCATGCTGGCTGCTTCACACCGCGTG 233
* *** * * *** * ****** * **** * * *** *****
consensus_13739#1 CTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGA-TGGGTTCATGTGAA 813
consensus_13739#2 C-AAGTGAGGTGGAA-AATCGTT---TTCGAATGGGACAATTGGGGTTCCTGGGAATAAA 569
consensus_13739#0 C-AAGTGAG-TGGAA-AATCGTT---TTCGATTGGATCA--TTGGGTTTCTTGTAATAAA 863
consensus_13739#3 CCAAGTGAG-TGGAA-AATCGTT--GTTCGATTGGATCA--TTGGGTTTCTTGTAATAAA 287
* **** ***** *** ** **** *** ** * * * * * **
consensus_13739#1 GATAAAACC-GTGCGTTATATTAGAGTGCCATTT-GAAGTCTTGT--TTAGTTCATTTGT 869
consensus_13739#2 AAAAAAATC-GTGGTATTTACAGGGGGCATTTTT-CAAGGCAGGGGGTAGGTTTATTTGG 627
consensus_13739#0 GAAAAAATC-GTG----TTATTACAGTGCCATTTTCAAGTCATGG--TTAGTTTATTTGT 916
consensus_13739#3 GAAAAAATCAGTG----TTATTACAGTGCCATTGTTCAAGTGCATGGTTAGTTTATNTTG 343
* **** * *** ** * ** * * *** ** *
consensus_13739#1 GGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTG-TATATATATGTATGCTCTCTGA 928
consensus_13739#2 GGGG--GGTATTAAAAGGGTAAAAGCCTTGGCATTTGATCCGGGGTTTTGTTCTCCCGGG 685
consensus_13739#0 GGGG---TTAT-TAATGTGTAAA-GTCTGGACATGTA-TGCGTGT---TATGTTCTCTGG 967
consensus_13739#3 TGGG--GTTAT-TAATGTGTGAAAGTGCTGG-ACATG-TATGCAGTGTNATGTTCTCCGG 398
*** *** ** * * * * * * ** * *
consensus_13739#1 TTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTAAAAAAAAAAA-------- 980
consensus_13739#2 GTCTTCGATATATAAGGGCGTTTCCAAACTACCGGGGGATGGGGTTTTG----------- 734
consensus_13739#0 TTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATTGCCATTGTAAAAA 1027
consensus_13739#3 TTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATGCCCATGTACNGCT 458
** ***** * * * ** *
consensus_13739#1 -------
consensus_13739#2 -------
consensus_13739#0 AAAAA-- 1032
consensus_13739#3 GCTCTAA 465
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||