|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1972 fasta sequence
[CGTTGCACAGCTCCAGGGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCGTGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGTGGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTCAGGCTGTAGGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGCGGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA-GGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCAATAGG-CCGTGTGGCACCTG-TTGATTCAGGTCTATGGTGGATCATATTACTTAGGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTGGAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTACTGGTAACTGATGGATCATGCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTGAAATTCAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATATTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAGAAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGTGGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATT-GGGAACCTGCAGCCAGCTCACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGC-TTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGA-ACCAGGAATGGAAGATCA-TTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGGAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATTCAGAAATTCTTAATGCTTTGAGCACAAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAAAAAAAAAAAAAAAAA]
[+] EMBL AK121301 [CGTTGCACAGCTCCAGGGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCGTGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGTGGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTCAGGCTGTAGGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGCGGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA GGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCAATAGG CCGTGTGGCACCTG TTGATTCAGGTCTATGGTGGATCATATTACTTAGGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTGGAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTACTGGTAACTGATGGATCATGCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTGAAATTCAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATATTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAGAAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGTGGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATT GGGAACCTGCAGCCAGCTCACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGC TTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGA ACCAGGAATGGAAGATCA TTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGGAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATTCAGAAATTCTTAATGCTTTGAGCACAAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAA ]
[+] EMBL CB625665 [CGTTGCACAGCTCCAGGGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCGTGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGTGGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTCAGGCTGTACGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGAGGAAGGCGTCTTCTGTGGAGGATGAATCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGCATTCGGGGAGGGACAATTGCTGCCAACGAC ]
[+] EMBL CB634295 [CGTTGCACAGCTCCAGGGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCGTGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGTGGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTCAGGCTGTAGGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGCGGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA GGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCAATAGG CCGTGTGGCACCTG TTGATTCAGGTCTATGGTGGATCATATTACTTANGGCGTATGGAAAGTGTTCAGGAG ]
[+] EMBL CB632298 [ GGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCGTGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGTGGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTCAGGCTGTAGGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGCGGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA GGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCAATAGG CCGTGTGGCACCTG TTGATTCAGGTCTATGGTGGATCATATTACTTAGGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTGGAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTACTGGTAACTGATGGATCATGCAT ]
[+] EMBL CB678568 [ GGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGCGGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA GGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCAATAGG CCGTGTGGCACCTG TTGATTCAGGTCTATGGTGGATCATATTACTTAGGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTGGAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTACTGGTAACTGATGGATCATGCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTGAAATTCAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATT ]
[+] EMBL C72575 [ TGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCANTTTCANTTTGCACANCCTTCAGCTTCAGAGCTGGGAGAAGACAGTGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACANTTCCACTCGATGGAGATGAAGATGCAACTGAGGGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCANTAGGCCCGTGTTGCACCTGTTTGATTCA ]
[+] EMBL CA767038 [ GGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA GGAGGTCCTGGATCCTGATTTTGGGGAGGCAGCAATAGG CCGTGTGGCACCTG TTGATTCAGGTCTATGGTGGATCATATTACTTAGGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTGGAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTACTGGTAACTGATGGATCATGCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTGAAATTCAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATATTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAGAAGAATATTNCTATGATGCTGGGAACAAGNTCAACGTATATCCTGATCAGGNTTCTNCGNGGCTTGGTGAGNGGATACCTNCTAAAGGAGG TACTTTATTGGGGAACCTGCAGCCAGCTTACATGGACTTCCGGTTNTTTTNTNTGGGGAANTTATGGGCCATAGTAAGCAGCTTTGGC ACAACTCA ]
[+] EMBL AU094014 [ CATTGAAGATATGCTATCCTGCTCTAGAGANCCCAGGAATGGAAGATCATTTACTGGAAGTGNCCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGGAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATTCAGAAATTCTTAATGCTTTGAGCACAAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAAAAAAAAAAAAAAAAA]
[-] EMBL CB678569 [ ATTGGGAAACAGTCTCTTCTTTACCAAAGGAGGTATATTGTTGGGTACCTTGTGGCCAAGCAACTGGTGGACAAACGTTATGCTGCTAGAATTCTTTGGAATGAAGAGGATTCAGAAATTATTAATGCTTTGAGCACAATCAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATGGTATGAGTTGTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCTTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCGCTTGCCTGGGCATTTCTCAATAGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTC ]
[+] EMBL BI811487 [ CTTTACC AACCTGTTCTATTGCTGGGTACCTTGTGGCCAA CAACTGCTGGACGAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACAAACCGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGC AAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATC ATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAAAAAAAAA ]
consensusID : consensus_13746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1196 fasta sequence
[TTGTGATAAAGCAAACTCACGTAAATATTGTTTTATGTAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATATTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAGAAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGTGGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATTGGGAACCTGCAACCAGCTCACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGCTTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGAAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCCCATACTATTGACCTAAAAAAAAGG]
[+] EMBL AK100373 [TTGTGATAAAGCAAACTCACGTAAATATTGTTTTATGTAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATATTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAGAAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGTGGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATTGGGAACCTGCAACCAGCTCACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGCTTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGGAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATTCAGAAATTCTTAATGCTTTGAGCACAAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGC ]
[-] EMBL CB634296 [ GGTCCATAGTAAGCAGCTTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATNTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGAAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCCCATACTATTGACCTAAAAAAAAGG]
[-] EMBL CB632299 [ GGTCCATAGTAAGCAGCTTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTACTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGAAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTAGGGGCCAAGCAGTATGATCCCATACTATTGACCTA ]
consensusID : consensus_13746#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[CCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAGCAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGAAAACGGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCCCAAAAAAAAAAAAA]
[-] EMBL CA759633 [CCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAGCAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGAAAACGGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCCCAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 CGTTGCACAGCTCCAGGGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCG 60
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 TGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGT 120
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 GGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTC 180
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 AGGCTGTAGGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGC 240
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 GGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACT 300
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 ATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGA 360
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 ATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGG 420
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 GAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGA 480
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 AGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAA 540
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 CAATTCCACTCGATGGAGATGAAGATGCAACTGAGGAGGTCTTGGATCCTGATTTTGGGG 600
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 AGGCAGCAATAGGCCGTGTGGCACCTGTTGATTCAGGTCTATGGTGGATCATATTACTTA 660
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 GGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTG 720
consensus_13746#1 ------------------------------------------------------------
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 GAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTAC 780
consensus_13746#1 -------------------------TTGTGATAAAGCAAACTCACGTAAATATTGTTTT- 34
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 TGGTAACTGATGGATCATGCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTG 840
consensus_13746#1 --ATGTAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAG 92
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 AAATTCAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAG 900
consensus_13746#1 ATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATA 152
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 ATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATA 960
consensus_13746#1 TTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAG 212
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 TTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAG 1020
consensus_13746#1 AAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGT 272
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 AAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGT 1080
consensus_13746#1 GGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATTGGGAACCTGCAACCAGCTC 332
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 GGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATTGGGAACCTGCAGCCAGCTC 1140
consensus_13746#1 ACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGCTTGGCAA 392
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 ACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGCTTGGCAA 1200
consensus_13746#1 CAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGG 452
consensus_13746#2 ------------------------------------------------------------
consensus_13746#0 CAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGG 1260
consensus_13746#1 CAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTA 512
consensus_13746#2 ----------------------------------------CCAGGAATGGAAGATCATTA 20
consensus_13746#0 CAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTA 1320
********************
consensus_13746#1 CTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACAT 572
consensus_13746#2 CTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACAT 80
consensus_13746#0 CTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACAT 1380
************************************************************
consensus_13746#1 TGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAG 632
consensus_13746#2 TGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAGCAGACCAGAGATTGCTGCAAAAG 140
consensus_13746#0 TGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAG 1440
************************************ ***********************
consensus_13746#1 CTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCA 692
consensus_13746#2 CTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCA 200
consensus_13746#0 CTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCA 1500
************************************************************
consensus_13746#1 AACGAGCACGCTTCATTGGAAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGT 752
consensus_13746#2 AACGAGCACGCTTCATTGGAAAACGGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGT 260
consensus_13746#0 AACGAGCACGCTTCATTGGGAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGT 1560
******************* **** ***********************************
consensus_13746#1 ACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACG 812
consensus_13746#2 ACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACG 320
consensus_13746#0 ACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACG 1620
************************************************************
consensus_13746#1 AGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAA 872
consensus_13746#2 AGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAA 380
consensus_13746#0 AGGATTCAGAAATTCTTAATGCTTTGAGCACAAACAGGAAAAGAGGCAAGAAAGTGTTAA 1680
***** ************************* ****************************
consensus_13746#1 AGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTT 932
consensus_13746#2 AGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTT 440
consensus_13746#0 AGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTT 1740
************************************************************
consensus_13746#1 AGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACG 992
consensus_13746#2 AGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACG 500
consensus_13746#0 AGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACG 1800
********************* **************************************
consensus_13746#1 GAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCA 1052
consensus_13746#2 GAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCA 560
consensus_13746#0 GAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCA 1860
************************************************************
consensus_13746#1 CTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCT 1112
consensus_13746#2 CTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCT 620
consensus_13746#0 CTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCT 1920
******************** ***************************************
consensus_13746#1 CTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCC 1172
consensus_13746#2 CTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCC 680
consensus_13746#0 CTTGTAGTTTACCATATACTCCATTTGACATGACAAAAAAAAAAAAAAAAAA-------- 1972
************************************* ** *
consensus_13746#1 CATACTATTGACCTAAAAAAAAGG 1196
consensus_13746#2 CAAAAAA-------AAAAAAA--- 694
consensus_13746#0 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||