These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2582 fasta sequence [TTAATTTGCTTCCATTTTGTTTATTACTCCTACAAGAAATTGATGAGGGGGTTCGCTTGCCGTTGCAGCACACCACATCCCCCTCATCCACCTGTCCGTGATGATACTCCCATAGTTGAGACTTGAGATTGCCCTTCTCCTCAATCTTGTTGATCTCTTCTCCCACCTCGC-GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATATGTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTACAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGTGCAACAAAATCATGAGGATCTTTACGCGTCATCTGATGATGGTTCACAGAACGGCAATTCTAAGGCTCAGGGGTTGCAAGCACAGTACTGCACTCTAGATTCATCCTCAGGCAATTTTGTGTATCCAGCACATAGCTCTACATCCTCCCACATAAGTGGGAGCCCCATTTCTCAGCAAGATAGCCACTCAGAGCACACATCTGGTTCCCCTGCAAGTGCTTCATGTGTTACTGAAGTTCCAGGCTTGAGGTTTACAACAATTGAGGAGATAGAGAATGCAATGTTTGGACCTGAACCTGACACAGTTAGCTCGGACTGCTCCTTACTTACTGATTCTGCTTTTTACCAAGATAACTGGAGGGAGCATCTGGGAATCAATACAGGGGACTTGAAGCAGGTAATTGCAGCATGCGGTAAGGCTGTTGATGAGAATAGTTGGTATAGGGACTTGCTGATATCTGAGTTAAGGAACATGGTTTCCATTTCTGGAGAGCCGATGCAACGCCTTGGAGCCTATATGTTGGAAGGCCTTGTTGCCAGGCTTTCTTCGACTGGGCATGCCTTATATAAATCCCTGAAGTGTAAAGAACCTACTAGCTTCGAGCTCATGTCTTATATGCATCTCCTCTATGAGATATGCCCGTTTTTCAAGTTTGGTTACATGTCTGCCAATGGAGCAATTGCAGAGGCTGTTAAGGGCGAGAACTTTGTTCACATCATCGACTTCCAAATTGCTCAAGGTAGCCAGTGGGCAACTATGATACAGGCCCTTGCTGCAAGGCCTGGGGGACCACCATACCTGAGGATTACTGGTATAGATGACTCGAATTCTGCCCATGCCCGAGGTGGTGGACTGGATATAGTCGGACGGCGGTTATTCAATATTGCCCAGTCATGTGGTCTGCCCTTTGAGTTCAATGCTGTCCCAGCAGCTAGTCATGAGGTTATGCTTGAACATCTTGATATAAGATCTGGGGAGGTTATTGTTGTTAATTTTGCCTACCAGCTGCATCACACTCCTGATGAGAGTGTGGGCATAGAAAATCACCGGGACAGGATATTGAGAATGGTCAAGGGGCTCTCTCCAAGGGTGGTAACTCTTGTAGAACAGGAAGCAAACACAAACACTGCACCTTTCTTCAATAGATACTTGGAAACTCTTGATTATTACACAGCTATGTTTGAAGCTATAGATGTTGCTTGCCCAAGGGATGACAAGAAGCGGATTAGCACTGAGCAACACTGTGTTGCAAGAGATATTGTTAATTTGATTGCATGTGAAGGTGCAGAAAGGGTGGAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACAAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT-CCAAGGTGGAACCTGATCTTCATAGAG-CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT-AGT-CCA-GT-CCAGT-C-GCAATATAGGT-GTAC-ACTGTACTGT-TTT-ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA-GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTACAATGATGATAT-GCCTCACTGAATTCTGGATCAAAAAA] [+] EMBL AK073386 [TTAATTTGCTTCCATTTTGTTTATTACTCCTACAAGAAATTGATGAGGGGGTTCGCTTGCCGTTGCAGCACACCACATCCCCCTCATCCACCTGTCCGTGATGATACTCCCATAGTTGAGACTTGAGATTGCCCTTCTCCTCAATCTTGTTGATCTCTTCTCCCACCTCGC GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATATGTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTACAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGTGCAACAAAATCATGAGGATCTTTACGCGTCATCTGATGATGGTTCACAGAACGGCAATTCTAAGGCTCAGGGGTTGCAAGCACAGTACTGCACTCTAGATTCATCCTCAGGCAATTTTGTGTATCCAGCACATAGCTCTACATCCTCCCACATAAGTGGGAGCCCCATTTCTCAGCAAGATAGCCACTCAGAGCACACATCTGGTTCCCCTGCAAGTGCTTCATGTGTTACTGAAGTTCCAGGCTTGAGGTTTACAACAATTGAGGAGATAGAGAATGCAATGTTTGGACCTGAACCTGACACAGTTAGCTCGGACTGCTCCTTACTTACTGATTCTGCTTTTTACCAAGATAACTGGAGGGAGCATCTGGGAATCAATACAGGGGACTTGAAGCAGGTAATTGCAGCATGCGGTAAGGCTGTTGATGAGAATAGTTGGTATAGGGACTTGCTGATATCTGAGTTAAGGAACATGGTTTCCATTTCTGGAGAGCCGATGCAACGCCTTGGAGCCTATATGTTGGAAGGCCTTGTTGCCAGGCTTTCTTCGACTGGGCATGCCTTATATAAATCCCTGAAGTGTAAAGAACCTACTAGCTTCGAGCTCATGTCTTATATGCATCTCCTCTATGAGATATGCCCGTTTTTCAAGTTTGGTTACATGTCTGCCAATGGAGCAATTGCAGAGGCTGTTAAGGGCGAGAACTTTGTTCACATCATCGACTTCCAAATTGCTCAAGGTAGCCAGTGGGCAACTATGATACAGGCCCTTGCTGCAAGGCCTGGGGGACCACCATACCTGAGGATTACTGGTATAGATGACTCGAATTCTGCCCATGCCCGAGGTGGTGGACTGGATATAGTCGGACGGCGGTTATTCAATATTGCCCAGTCATGTGGTCTGCCCTTTGAGTTCAATGCTGTCCCAGCAGCTAGTCATGAGGTTATGCTTGAACATCTTGATATAAGATCTGGGGAGGTTATTGTTGTTAATTTTGCCTACCAGCTGCATCACACTCCTGATGAGAGTGTGGGCATAGAAAATCACCGGGACAGGATATTGAGAATGGTCAAGGGGCTCTCTCCAAGGGTGGTAACTCTTGTAGAACAGGAAGCAAACACAAACACTGCACCTTTCTTCAATAGATACTTGGAAACTCTTGATTATTACACAGCTATGTTTGAAGCTATAGATGTTGCTTGCCCAAGGGATGACAAGAAGCGGATTAGCACTGAGCAACACTGTGTTGCAAGAGATATTGTTAATTTGATTGCATGTGAAGGTGCAGAAAGGGTGGAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACAAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAG CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC ACTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTACAATGATGATAT GCCTCAC ] [+] EMBL OSS1791A [ CCTCAATCTTGTTGATCTCTTCTCCCACCTCGC GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAGGTGCATCATTCCTCAGCGACTNCAGCATATAAATAAAATCCAGAGGGTTGCACCAGAGAATATGTCAATGCAGGGCTCTAACCGACCATACAGNTATCCAGNCAATTCTCAAATACCATACTACAGCCGGNGGTTAATGCATGTGGGGC AAATGGGACTTACC TGTGC ANAAAATCATGGGGtc ] [+] EMBL AU174234 [ CCTCAATCTTGTTGATCTCTTCTCCCACCTCGCAGCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATATGTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTACAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGT ] [+] EMBL OSS2344A [ CCTCAATCTTGTTGATCTCTTCTCCCACCTCGC GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGAC ] [+] EMBL CB665846 [ CTCAATCTTGTTGATCTCTTCTCCCACCTCGC GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATATGTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTACAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGTGCAACAAAATCATGAGGATCTTTACGCGTCATCTGATGATGGTTCACAGAACGGCAATTCTAAGGCTCAGGGGTTGCAAGCACAGTACTGCACTCTAGATTCATCCTCAGGCAATTTTGTGTATCCAGCACATAGCTCTACATCCTCCCACATAAGTGGGAGCCCCATTTCTCAGCAAGATAGCCACTCAGAGCACACATCTGGTTCCCCTGCAAGTGCTTCATGTGTTACTGAAGTTCCAGGCTTGAGGTTTACAACAATTGAGGAGATAGAGAATGCAATGTTTGGACCTGAACCTGACACAGTTAGCTCGGACTGCTCCTTACTTACTGATTCTG ] [+] EMBL CB665836 [ CTCAATCTTGTTGATCTCTTCTCCCACCTCGC GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATATGTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTACAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGTGCAACAAAATCATGAGGATCTTTACGCGTCATCTGATGATGGTTCACAGAACGGCAATTCTAAGGCTCAGGGGTTGCAAGCACAGTACTGCACTCTAGATTCATCCTCAGGCAATTTTGTGTATCCAGCACATAGCTCTACATCCTCCCACATAAGTGGGAGCCCCATTTCTCAGCAAGATAGCCACTCAGAGCACACATCTGGTTCCCCTGCAAGTGCTTCATGTGTTACTGAAGTTCCAGGCTTGAGGTTTACAACAATTGAGGAGATAGAGAATGNCATGTTTGGACCTGAACCTGACACAGTTAGCTCGGACTGCTCCTTACTTA ] [-] EMBL CB665837 [ ACACAAACCCTGCA CTTTCTTCAATAGATACTTGGAAACTCTTGATTATTACACAGCTATGTTTGAAGCTATAGATGTTGCTTGCCCAAGGGATGACAAGAAGCGGATTAGCACTGAGCAACACTGTGTTGCAAGAGATATTGTTAATTTGATTGCATGTGAAGGTGCAGAAAGGGTGGAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACAAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAG CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC ACTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGT ] [-] EMBL CB665847 [ TTGGAAACTCTTGATTATTACACAGCTATGTTTGAAGCTATAGATGTTGCTTGCCCAAGGGATGACAAGAAGCGGATTAGCACTGAGCAACACTGTGTTGCAAGAGATATTGTTAATTTGATTGCATGTGAAGGTGCAGAAAGGGTGGAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACAAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAG CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC ACTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCGCCAGAGTCCGTTTCTTGATCCTGCTCGTTGT CAAAAAAAAGA ] [+] EMBL BI807391 [ AAGCTAGAGGAGAGAGATGGT CCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCAT GCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAATCCCAAGGTGGAACCTGATCTTCATAGAGACAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATC CCATA GCAGAATACTCTTCCTGACTTCCCAT AGT CCACGT CCAGT C CAATATAGGT GTACAACTGTACTGT TTT ACCTGCTCATGGTAGAATCTCC TTTTATGTCGATCACGTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTAAAAa ] [+] EMBL BM421734 [ TGTATCTTCTGCAT GCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAGACAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC CTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATAC ATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTAC ATGATGATATCNCCTCACTGAATTCTGGATCAAAAAA] [+] EMBL AU174235 [ GAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAG CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC ACTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTACAAaaa ] [+] EMBL AU222917 [ TTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAG CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC ACTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTACAAaaa ] [+] EMBL BM420652 [ ctgtgCCCATGAGTGCCA GTGCCAGTGCGGCAATATAGGTGGTAC ACTGTACTGTGTTTGACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATAC ATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTAC ATGATGATAT GCCTCACTGAATTCTGGA AAAAA ] consensusID : consensus_13767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [GAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACTAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAATCCAAGGTGGAACCTGATCTTCATAGAGACAGAGAGAACTCCATAGTCCATAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCGGAATACTCTTCCTGACTTCCCATAGTCCAGTCCAGTCGCAATATAGGTGTACACTGTACTGTTTTACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCAGTCAAGTAGAGTCTGGTCACTAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTCCATACAATGACGTCTAATGTGGATTNCTGGATCCTATGNCTCTNCNNNNNANANNNAANTNNNNN] [+] EMBL CA757904 [GAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACTAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAATCCAAGGTGGAACCTGATCTTCATAGAGACAGAGAGAACTCCATAGTCCATAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCGGAATACTCTTCCTGACTTCCCATAGTCCAGTCCAGTCGCAATATAGGTGTACACTGTACTGTTTTACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCAGTCAAGTAGAGTCTGGTCACTAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTCCATACAATGACGTCTAATGTGGATTNCTGGATCCTATGNCTCTNCNNNNNANANNNAANTNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13767#0 TTAATTTGCTTCCATTTTGTTTATTACTCCTACAAGAAATTGATGAGGGGGTTCGCTTGC 60 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 CGTTGCAGCACACCACATCCCCCTCATCCACCTGTCCGTGATGATACTCCCATAGTTGAG 120 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 ACTTGAGATTGCCCTTCTCCTCAATCTTGTTGATCTCTTCTCCCACCTCGCGCCTTCGAG 180 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 CTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGT 240 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 TGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCT 300 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 AAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTG 360 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 GCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTG 420 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 CATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATAT 480 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 GTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTA 540 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 CAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGTGCAACAAAATCATGA 600 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 GGATCTTTACGCGTCATCTGATGATGGTTCACAGAACGGCAATTCTAAGGCTCAGGGGTT 660 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 GCAAGCACAGTACTGCACTCTAGATTCATCCTCAGGCAATTTTGTGTATCCAGCACATAG 720 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 CTCTACATCCTCCCACATAAGTGGGAGCCCCATTTCTCAGCAAGATAGCCACTCAGAGCA 780 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 CACATCTGGTTCCCCTGCAAGTGCTTCATGTGTTACTGAAGTTCCAGGCTTGAGGTTTAC 840 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 AACAATTGAGGAGATAGAGAATGCAATGTTTGGACCTGAACCTGACACAGTTAGCTCGGA 900 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 CTGCTCCTTACTTACTGATTCTGCTTTTTACCAAGATAACTGGAGGGAGCATCTGGGAAT 960 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 CAATACAGGGGACTTGAAGCAGGTAATTGCAGCATGCGGTAAGGCTGTTGATGAGAATAG 1020 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 TTGGTATAGGGACTTGCTGATATCTGAGTTAAGGAACATGGTTTCCATTTCTGGAGAGCC 1080 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 GATGCAACGCCTTGGAGCCTATATGTTGGAAGGCCTTGTTGCCAGGCTTTCTTCGACTGG 1140 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 GCATGCCTTATATAAATCCCTGAAGTGTAAAGAACCTACTAGCTTCGAGCTCATGTCTTA 1200 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 TATGCATCTCCTCTATGAGATATGCCCGTTTTTCAAGTTTGGTTACATGTCTGCCAATGG 1260 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 AGCAATTGCAGAGGCTGTTAAGGGCGAGAACTTTGTTCACATCATCGACTTCCAAATTGC 1320 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 TCAAGGTAGCCAGTGGGCAACTATGATACAGGCCCTTGCTGCAAGGCCTGGGGGACCACC 1380 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 ATACCTGAGGATTACTGGTATAGATGACTCGAATTCTGCCCATGCCCGAGGTGGTGGACT 1440 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 GGATATAGTCGGACGGCGGTTATTCAATATTGCCCAGTCATGTGGTCTGCCCTTTGAGTT 1500 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 CAATGCTGTCCCAGCAGCTAGTCATGAGGTTATGCTTGAACATCTTGATATAAGATCTGG 1560 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 GGAGGTTATTGTTGTTAATTTTGCCTACCAGCTGCATCACACTCCTGATGAGAGTGTGGG 1620 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 CATAGAAAATCACCGGGACAGGATATTGAGAATGGTCAAGGGGCTCTCTCCAAGGGTGGT 1680 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 AACTCTTGTAGAACAGGAAGCAAACACAAACACTGCACCTTTCTTCAATAGATACTTGGA 1740 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 AACTCTTGATTATTACACAGCTATGTTTGAAGCTATAGATGTTGCTTGCCCAAGGGATGA 1800 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 CAAGAAGCGGATTAGCACTGAGCAACACTGTGTTGCAAGAGATATTGTTAATTTGATTGC 1860 consensus_13767#1 ------------------------------------------------------------ consensus_13767#0 ATGTGAAGGTGCAGAAAGGGTGGAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCT 1920 consensus_13767#1 ----------------------GAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCT 38 ************************************** consensus_13767#0 TTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAA 1980 consensus_13767#1 TTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAA 98 ************************************************************ consensus_13767#0 GTTGCTGGATAGTTACCACAGTTACTACAAGCTAGAGGAGAGAGATGGTGCCCTTTATCT 2040 consensus_13767#1 GTTGCTGGATAGTTACCACAGTTACTACTAGCTAGAGGAGAGAGATGGTGCCCTTTATCT 158 **************************** ******************************* consensus_13767#0 TGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAA 2100 consensus_13767#1 TGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAA 218 ************************************************************ consensus_13767#0 TTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAATCCAAGGT 2160 consensus_13767#1 TTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAATCCAAGGT 278 ************************************************************ consensus_13767#0 GGAACCTGATCTTCATAGAG-CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTG 2219 consensus_13767#1 GGAACCTGATCTTCATAGAGACAGAGAGAACTCCATAGTCCATAACAATGTGGTCGCTTG 338 ******************** ********************* ***************** consensus_13767#0 CTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCAT 2279 consensus_13767#1 CTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCAT 398 ************************************************************ consensus_13767#0 AGGCAGAATACTCTTCCTGACTTCCCATAGTCCAGTCCAGTCGCAATATAGGTGTACACT 2339 consensus_13767#1 AGGCGGAATACTCTTCCTGACTTCCCATAGTCCAGTCCAGTCGCAATATAGGTGTACACT 458 **** ******************************************************* consensus_13767#0 GTACTGTTTTACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCAGTCAAGTAGAGTC 2399 consensus_13767#1 GTACTGTTTTACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCAGTCAAGTAGAGTC 518 ************************************************************ consensus_13767#0 TGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAG 2459 consensus_13767#1 TGGTCACTAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAG 578 ******* **************************************************** consensus_13767#0 TCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAAT 2519 consensus_13767#1 TCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTCCA-TACAATGACGTCT-AAT 636 *************************************** ** ************* *** consensus_13767#0 GTGAATTC-TGGATCCTATGCTACTACAATGATGATATGCCTCACTGAATTCTGGATCAA 2578 consensus_13767#1 GTGGATTNCTGGATCCTATGNCTCTNCNNNNNANANNNAANTNNNNN------------- 683 *** *** *********** ** * * * consensus_13767#0 AAAA 2582 consensus_13767#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||