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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2582 fasta sequence
[TTAATTTGCTTCCATTTTGTTTATTACTCCTACAAGAAATTGATGAGGGGGTTCGCTTGCCGTTGCAGCACACCACATCCCCCTCATCCACCTGTCCGTGATGATACTCCCATAGTTGAGACTTGAGATTGCCCTTCTCCTCAATCTTGTTGATCTCTTCTCCCACCTCGC-GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATATGTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTACAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGTGCAACAAAATCATGAGGATCTTTACGCGTCATCTGATGATGGTTCACAGAACGGCAATTCTAAGGCTCAGGGGTTGCAAGCACAGTACTGCACTCTAGATTCATCCTCAGGCAATTTTGTGTATCCAGCACATAGCTCTACATCCTCCCACATAAGTGGGAGCCCCATTTCTCAGCAAGATAGCCACTCAGAGCACACATCTGGTTCCCCTGCAAGTGCTTCATGTGTTACTGAAGTTCCAGGCTTGAGGTTTACAACAATTGAGGAGATAGAGAATGCAATGTTTGGACCTGAACCTGACACAGTTAGCTCGGACTGCTCCTTACTTACTGATTCTGCTTTTTACCAAGATAACTGGAGGGAGCATCTGGGAATCAATACAGGGGACTTGAAGCAGGTAATTGCAGCATGCGGTAAGGCTGTTGATGAGAATAGTTGGTATAGGGACTTGCTGATATCTGAGTTAAGGAACATGGTTTCCATTTCTGGAGAGCCGATGCAACGCCTTGGAGCCTATATGTTGGAAGGCCTTGTTGCCAGGCTTTCTTCGACTGGGCATGCCTTATATAAATCCCTGAAGTGTAAAGAACCTACTAGCTTCGAGCTCATGTCTTATATGCATCTCCTCTATGAGATATGCCCGTTTTTCAAGTTTGGTTACATGTCTGCCAATGGAGCAATTGCAGAGGCTGTTAAGGGCGAGAACTTTGTTCACATCATCGACTTCCAAATTGCTCAAGGTAGCCAGTGGGCAACTATGATACAGGCCCTTGCTGCAAGGCCTGGGGGACCACCATACCTGAGGATTACTGGTATAGATGACTCGAATTCTGCCCATGCCCGAGGTGGTGGACTGGATATAGTCGGACGGCGGTTATTCAATATTGCCCAGTCATGTGGTCTGCCCTTTGAGTTCAATGCTGTCCCAGCAGCTAGTCATGAGGTTATGCTTGAACATCTTGATATAAGATCTGGGGAGGTTATTGTTGTTAATTTTGCCTACCAGCTGCATCACACTCCTGATGAGAGTGTGGGCATAGAAAATCACCGGGACAGGATATTGAGAATGGTCAAGGGGCTCTCTCCAAGGGTGGTAACTCTTGTAGAACAGGAAGCAAACACAAACACTGCACCTTTCTTCAATAGATACTTGGAAACTCTTGATTATTACACAGCTATGTTTGAAGCTATAGATGTTGCTTGCCCAAGGGATGACAAGAAGCGGATTAGCACTGAGCAACACTGTGTTGCAAGAGATATTGTTAATTTGATTGCATGTGAAGGTGCAGAAAGGGTGGAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACAAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT-CCAAGGTGGAACCTGATCTTCATAGAG-CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT-AGT-CCA-GT-CCAGT-C-GCAATATAGGT-GTAC-ACTGTACTGT-TTT-ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA-GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTACAATGATGATAT-GCCTCACTGAATTCTGGATCAAAAAA]
[+] EMBL AK073386 [TTAATTTGCTTCCATTTTGTTTATTACTCCTACAAGAAATTGATGAGGGGGTTCGCTTGCCGTTGCAGCACACCACATCCCCCTCATCCACCTGTCCGTGATGATACTCCCATAGTTGAGACTTGAGATTGCCCTTCTCCTCAATCTTGTTGATCTCTTCTCCCACCTCGC GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATATGTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTACAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGTGCAACAAAATCATGAGGATCTTTACGCGTCATCTGATGATGGTTCACAGAACGGCAATTCTAAGGCTCAGGGGTTGCAAGCACAGTACTGCACTCTAGATTCATCCTCAGGCAATTTTGTGTATCCAGCACATAGCTCTACATCCTCCCACATAAGTGGGAGCCCCATTTCTCAGCAAGATAGCCACTCAGAGCACACATCTGGTTCCCCTGCAAGTGCTTCATGTGTTACTGAAGTTCCAGGCTTGAGGTTTACAACAATTGAGGAGATAGAGAATGCAATGTTTGGACCTGAACCTGACACAGTTAGCTCGGACTGCTCCTTACTTACTGATTCTGCTTTTTACCAAGATAACTGGAGGGAGCATCTGGGAATCAATACAGGGGACTTGAAGCAGGTAATTGCAGCATGCGGTAAGGCTGTTGATGAGAATAGTTGGTATAGGGACTTGCTGATATCTGAGTTAAGGAACATGGTTTCCATTTCTGGAGAGCCGATGCAACGCCTTGGAGCCTATATGTTGGAAGGCCTTGTTGCCAGGCTTTCTTCGACTGGGCATGCCTTATATAAATCCCTGAAGTGTAAAGAACCTACTAGCTTCGAGCTCATGTCTTATATGCATCTCCTCTATGAGATATGCCCGTTTTTCAAGTTTGGTTACATGTCTGCCAATGGAGCAATTGCAGAGGCTGTTAAGGGCGAGAACTTTGTTCACATCATCGACTTCCAAATTGCTCAAGGTAGCCAGTGGGCAACTATGATACAGGCCCTTGCTGCAAGGCCTGGGGGACCACCATACCTGAGGATTACTGGTATAGATGACTCGAATTCTGCCCATGCCCGAGGTGGTGGACTGGATATAGTCGGACGGCGGTTATTCAATATTGCCCAGTCATGTGGTCTGCCCTTTGAGTTCAATGCTGTCCCAGCAGCTAGTCATGAGGTTATGCTTGAACATCTTGATATAAGATCTGGGGAGGTTATTGTTGTTAATTTTGCCTACCAGCTGCATCACACTCCTGATGAGAGTGTGGGCATAGAAAATCACCGGGACAGGATATTGAGAATGGTCAAGGGGCTCTCTCCAAGGGTGGTAACTCTTGTAGAACAGGAAGCAAACACAAACACTGCACCTTTCTTCAATAGATACTTGGAAACTCTTGATTATTACACAGCTATGTTTGAAGCTATAGATGTTGCTTGCCCAAGGGATGACAAGAAGCGGATTAGCACTGAGCAACACTGTGTTGCAAGAGATATTGTTAATTTGATTGCATGTGAAGGTGCAGAAAGGGTGGAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACAAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAG CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC ACTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTACAATGATGATAT GCCTCAC ]
[+] EMBL OSS1791A [ CCTCAATCTTGTTGATCTCTTCTCCCACCTCGC GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAGGTGCATCATTCCTCAGCGACTNCAGCATATAAATAAAATCCAGAGGGTTGCACCAGAGAATATGTCAATGCAGGGCTCTAACCGACCATACAGNTATCCAGNCAATTCTCAAATACCATACTACAGCCGGNGGTTAATGCATGTGGGGC AAATGGGACTTACC TGTGC ANAAAATCATGGGGtc ]
[+] EMBL AU174234 [ CCTCAATCTTGTTGATCTCTTCTCCCACCTCGCAGCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATATGTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTACAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGT ]
[+] EMBL OSS2344A [ CCTCAATCTTGTTGATCTCTTCTCCCACCTCGC GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGAC ]
[+] EMBL CB665846 [ CTCAATCTTGTTGATCTCTTCTCCCACCTCGC GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATATGTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTACAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGTGCAACAAAATCATGAGGATCTTTACGCGTCATCTGATGATGGTTCACAGAACGGCAATTCTAAGGCTCAGGGGTTGCAAGCACAGTACTGCACTCTAGATTCATCCTCAGGCAATTTTGTGTATCCAGCACATAGCTCTACATCCTCCCACATAAGTGGGAGCCCCATTTCTCAGCAAGATAGCCACTCAGAGCACACATCTGGTTCCCCTGCAAGTGCTTCATGTGTTACTGAAGTTCCAGGCTTGAGGTTTACAACAATTGAGGAGATAGAGAATGCAATGTTTGGACCTGAACCTGACACAGTTAGCTCGGACTGCTCCTTACTTACTGATTCTG ]
[+] EMBL CB665836 [ CTCAATCTTGTTGATCTCTTCTCCCACCTCGC GCCTTCGAGCTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGTTGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCTAAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTGGCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTGCATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATATGTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTACAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGTGCAACAAAATCATGAGGATCTTTACGCGTCATCTGATGATGGTTCACAGAACGGCAATTCTAAGGCTCAGGGGTTGCAAGCACAGTACTGCACTCTAGATTCATCCTCAGGCAATTTTGTGTATCCAGCACATAGCTCTACATCCTCCCACATAAGTGGGAGCCCCATTTCTCAGCAAGATAGCCACTCAGAGCACACATCTGGTTCCCCTGCAAGTGCTTCATGTGTTACTGAAGTTCCAGGCTTGAGGTTTACAACAATTGAGGAGATAGAGAATGNCATGTTTGGACCTGAACCTGACACAGTTAGCTCGGACTGCTCCTTACTTA ]
[-] EMBL CB665837 [ ACACAAACCCTGCA CTTTCTTCAATAGATACTTGGAAACTCTTGATTATTACACAGCTATGTTTGAAGCTATAGATGTTGCTTGCCCAAGGGATGACAAGAAGCGGATTAGCACTGAGCAACACTGTGTTGCAAGAGATATTGTTAATTTGATTGCATGTGAAGGTGCAGAAAGGGTGGAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACAAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAG CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC ACTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGT ]
[-] EMBL CB665847 [ TTGGAAACTCTTGATTATTACACAGCTATGTTTGAAGCTATAGATGTTGCTTGCCCAAGGGATGACAAGAAGCGGATTAGCACTGAGCAACACTGTGTTGCAAGAGATATTGTTAATTTGATTGCATGTGAAGGTGCAGAAAGGGTGGAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACAAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAG CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC ACTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCGCCAGAGTCCGTTTCTTGATCCTGCTCGTTGT CAAAAAAAAGA ]
[+] EMBL BI807391 [ AAGCTAGAGGAGAGAGATGGT CCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCAT GCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAATCCCAAGGTGGAACCTGATCTTCATAGAGACAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATC CCATA GCAGAATACTCTTCCTGACTTCCCAT AGT CCACGT CCAGT C CAATATAGGT GTACAACTGTACTGT TTT ACCTGCTCATGGTAGAATCTCC TTTTATGTCGATCACGTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTAAAAa ]
[+] EMBL BM421734 [ TGTATCTTCTGCAT GCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAGACAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC CTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATAC ATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTAC ATGATGATATCNCCTCACTGAATTCTGGATCAAAAAA]
[+] EMBL AU174235 [ GAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAG CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC ACTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTACAAaaa ]
[+] EMBL AU222917 [ TTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAAT CCAAGGTGGAACCTGATCTTCATAGAG CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCAT AGT CCA GT CCAGT C GCAATATAGGT GTAC ACTGTACTGT TTT ACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTACAAaaa ]
[+] EMBL BM420652 [ ctgtgCCCATGAGTGCCA GTGCCAGTGCGGCAATATAGGTGGTAC ACTGTACTGTGTTTGACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCA GTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATAC ATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTAC ATGATGATAT GCCTCACTGAATTCTGGA AAAAA ]
consensusID : consensus_13767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[GAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACTAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAATCCAAGGTGGAACCTGATCTTCATAGAGACAGAGAGAACTCCATAGTCCATAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCGGAATACTCTTCCTGACTTCCCATAGTCCAGTCCAGTCGCAATATAGGTGTACACTGTACTGTTTTACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCAGTCAAGTAGAGTCTGGTCACTAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTCCATACAATGACGTCTAATGTGGATTNCTGGATCCTATGNCTCTNCNNNNNANANNNAANTNNNNN]
[+] EMBL CA757904 [GAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCTTTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAAGTTGCTGGATAGTTACCACAGTTACTACTAGCTAGAGGAGAGAGATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAATCCAAGGTGGAACCTGATCTTCATAGAGACAGAGAGAACTCCATAGTCCATAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCATAGGCGGAATACTCTTCCTGACTTCCCATAGTCCAGTCCAGTCGCAATATAGGTGTACACTGTACTGTTTTACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCAGTCAAGTAGAGTCTGGTCACTAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTCCATACAATGACGTCTAATGTGGATTNCTGGATCCTATGNCTCTNCNNNNNANANNNAANTNNNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13767#0 TTAATTTGCTTCCATTTTGTTTATTACTCCTACAAGAAATTGATGAGGGGGTTCGCTTGC 60
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 CGTTGCAGCACACCACATCCCCCTCATCCACCTGTCCGTGATGATACTCCCATAGTTGAG 120
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 ACTTGAGATTGCCCTTCTCCTCAATCTTGTTGATCTCTTCTCCCACCTCGCGCCTTCGAG 180
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 CTAGTCGTGTTTAGGTTTAGCCCCATTAATCTTGGTAAGGGTGGTAGTGGTTGTTGCTGT 240
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 TGTTGTTGTTGTTGCCCTGAAGCTTTCTTCCTCAAGGACCAGAATTTGTCTTCAGCTGCT 300
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 AAAGGAGGGCCTACCACTAAAGATTTGTGATCAATCCCACTTTGATCTATTACCATTGTG 360
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 GCGCTGAATATTCAGTGATAACAACGGCAAGATCAACTCCCTATTAATTGTTCGGAAGTG 420
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 CATCATTCCTCAGCGACTCCAGCATATAAATAAAATCCAGAAGGTTGCACCAGAGAATAT 480
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 GTCAATGCAGGCCTCTAACCGACCATACAGATATCCAGACAATTCTCAAATACCATACTA 540
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 CAGCCGGAGTTCAATGCATGTGGGGCAAAATGGTACTTACCATGTGCAACAAAATCATGA 600
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 GGATCTTTACGCGTCATCTGATGATGGTTCACAGAACGGCAATTCTAAGGCTCAGGGGTT 660
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 GCAAGCACAGTACTGCACTCTAGATTCATCCTCAGGCAATTTTGTGTATCCAGCACATAG 720
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 CTCTACATCCTCCCACATAAGTGGGAGCCCCATTTCTCAGCAAGATAGCCACTCAGAGCA 780
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 CACATCTGGTTCCCCTGCAAGTGCTTCATGTGTTACTGAAGTTCCAGGCTTGAGGTTTAC 840
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 AACAATTGAGGAGATAGAGAATGCAATGTTTGGACCTGAACCTGACACAGTTAGCTCGGA 900
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 CTGCTCCTTACTTACTGATTCTGCTTTTTACCAAGATAACTGGAGGGAGCATCTGGGAAT 960
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 CAATACAGGGGACTTGAAGCAGGTAATTGCAGCATGCGGTAAGGCTGTTGATGAGAATAG 1020
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 TTGGTATAGGGACTTGCTGATATCTGAGTTAAGGAACATGGTTTCCATTTCTGGAGAGCC 1080
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 GATGCAACGCCTTGGAGCCTATATGTTGGAAGGCCTTGTTGCCAGGCTTTCTTCGACTGG 1140
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 GCATGCCTTATATAAATCCCTGAAGTGTAAAGAACCTACTAGCTTCGAGCTCATGTCTTA 1200
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 TATGCATCTCCTCTATGAGATATGCCCGTTTTTCAAGTTTGGTTACATGTCTGCCAATGG 1260
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 AGCAATTGCAGAGGCTGTTAAGGGCGAGAACTTTGTTCACATCATCGACTTCCAAATTGC 1320
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 TCAAGGTAGCCAGTGGGCAACTATGATACAGGCCCTTGCTGCAAGGCCTGGGGGACCACC 1380
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 ATACCTGAGGATTACTGGTATAGATGACTCGAATTCTGCCCATGCCCGAGGTGGTGGACT 1440
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 GGATATAGTCGGACGGCGGTTATTCAATATTGCCCAGTCATGTGGTCTGCCCTTTGAGTT 1500
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 CAATGCTGTCCCAGCAGCTAGTCATGAGGTTATGCTTGAACATCTTGATATAAGATCTGG 1560
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 GGAGGTTATTGTTGTTAATTTTGCCTACCAGCTGCATCACACTCCTGATGAGAGTGTGGG 1620
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 CATAGAAAATCACCGGGACAGGATATTGAGAATGGTCAAGGGGCTCTCTCCAAGGGTGGT 1680
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 AACTCTTGTAGAACAGGAAGCAAACACAAACACTGCACCTTTCTTCAATAGATACTTGGA 1740
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 AACTCTTGATTATTACACAGCTATGTTTGAAGCTATAGATGTTGCTTGCCCAAGGGATGA 1800
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 CAAGAAGCGGATTAGCACTGAGCAACACTGTGTTGCAAGAGATATTGTTAATTTGATTGC 1860
consensus_13767#1 ------------------------------------------------------------
consensus_13767#0 ATGTGAAGGTGCAGAAAGGGTGGAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCT 1920
consensus_13767#1 ----------------------GAGAGGCACGAGCCTTTTGGAAAATGGAGGGCAAGGCT 38
**************************************
consensus_13767#0 TTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAA 1980
consensus_13767#1 TTCAATGGCTGGCTTTAGGCCGTACCCACTAAGTGCACTGGTGAACAACACTATCAAAAA 98
************************************************************
consensus_13767#0 GTTGCTGGATAGTTACCACAGTTACTACAAGCTAGAGGAGAGAGATGGTGCCCTTTATCT 2040
consensus_13767#1 GTTGCTGGATAGTTACCACAGTTACTACTAGCTAGAGGAGAGAGATGGTGCCCTTTATCT 158
**************************** *******************************
consensus_13767#0 TGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAA 2100
consensus_13767#1 TGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAA 218
************************************************************
consensus_13767#0 TTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAATCCAAGGT 2160
consensus_13767#1 TTTGGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAATCCAAGGT 278
************************************************************
consensus_13767#0 GGAACCTGATCTTCATAGAG-CAGAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTG 2219
consensus_13767#1 GGAACCTGATCTTCATAGAGACAGAGAGAACTCCATAGTCCATAACAATGTGGTCGCTTG 338
******************** ********************* *****************
consensus_13767#0 CTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCAT 2279
consensus_13767#1 CTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCGTCAGATTTAATCGCCAT 398
************************************************************
consensus_13767#0 AGGCAGAATACTCTTCCTGACTTCCCATAGTCCAGTCCAGTCGCAATATAGGTGTACACT 2339
consensus_13767#1 AGGCGGAATACTCTTCCTGACTTCCCATAGTCCAGTCCAGTCGCAATATAGGTGTACACT 458
**** *******************************************************
consensus_13767#0 GTACTGTTTTACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCAGTCAAGTAGAGTC 2399
consensus_13767#1 GTACTGTTTTACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCAGTCAAGTAGAGTC 518
************************************************************
consensus_13767#0 TGGTCACCAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAG 2459
consensus_13767#1 TGGTCACTAGAATCCCCGTCTTAATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAG 578
******* ****************************************************
consensus_13767#0 TCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTACAATACAATGACGTCTCAAT 2519
consensus_13767#1 TCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTCCA-TACAATGACGTCT-AAT 636
*************************************** ** ************* ***
consensus_13767#0 GTGAATTC-TGGATCCTATGCTACTACAATGATGATATGCCTCACTGAATTCTGGATCAA 2578
consensus_13767#1 GTGGATTNCTGGATCCTATGNCTCTNCNNNNNANANNNAANTNNNNN------------- 683
*** *** *********** ** * * *
consensus_13767#0 AAAA 2582
consensus_13767#1 ----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||