cluster # 13768

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Oryza sativa
cluster # 13768 cluster # 13768 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13768#0 length = 1286 sequences # 12

consensus_13768#1 length = 847 sequences # 1
consensus_13768#2 length = 497 sequences # 1

consensusID : consensus_13768#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1286
fasta sequence

                              [TACTACTTGACCACCTCTCCGTCTCTCTTCCCCTTCCACGCCACCTCTCCCCTTCCCACAGTCCCACGTCGTCGCCGGCGACACGCAGACGAACGCGCCCGGCAAACCATGGCGGCGCGATCCGGACCACCCGCCGCGGCCGTCGACCCCGAGGCCGTGCTCTCCCACAGCTTCCCCGAGGTCTCCTTCGCCTACGACGAGAGGGATGTGGCGCTGTACGCGCTCGGAGTCGGGGCGTGCGGCGCGGACGCCATCGACGAGAAGGAGCTGCACCTGGTGTACCACAGGGACGGCCAGCCACACATCAAGGCTCTTCCTACTTTTGCTTCTTTATTTCCTTTCAAGAACAGCAATGGGCTTGGAATTGTTGATGTGCCTGGCCTTAACTTTGACGCAAGCCTTCTATTGCATGGTCAACATTACATAGAGATATACAAGCCAATTCATTCGCGTGCCAATGTTGTAAACAAGACCAAGATAGCTGGCTTGCATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTCAAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGAGGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCC-AATACTGCATGGTCTCAGTT-CCCTTGGATTCGCGATCCGCGCT-GTCATCAAATCTTTCTGCAATGGAGATCCAACAGCAGTGAAAAGCATCTTTGGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAAGGCCAGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCATTGTAAGTGCTGTATCATATTCTTGACTGGATATTTTATAAATTGGTGCCTGCCTGCTTGTATTAGTTTGGTAGTGTGTAGTGGTCAGAAAAGCTAAAGCTTTCCGGGGACATAAAATCAGGTAAATGAAGAGCTTCAGCTACCGCAAGTGGTGGGTTGCCATTGTAATGATAACAAGTGCTCTGCACCTATCTTCAAATGATACATTGCCTAATTTCTCTTCTGTAAAAAAAAAA]

[+] EMBL CF334985             [TACTACTTGACCACCTCTCCGTCTCTCTTCCCCTTCCACGCCACCTCTCCCCTTCCCACAGTCCCACGTCGTCGCCGGCGACACGCAGACGAACGCGCCCGGCAAACCATGGCGGCGCGATCCGGACCACCCGCCGCGGTCGTTGACCCCGAGGCCGTGCTCTTCCACAGCTTGCCCGAGGTCTCCTTCGCCTACGACGAGAGGGATGTGGCGCTGTACGCGCTCGGAGTCAGGGCGTGCGGCGCGGACGCCATCGACGAGAAGGAGCTGCACCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB676348             [    ACTTGACCACCTCTCCGTCTCTCTTCCCCTTCCACGCCACCTCTCCCCTTCCCACAGTCCCACGTCGTCGCCGGCGACACGCAGACGAACGCGCCCGGCAAACCATGGCGGCGCGATCCGGACCACCCGCCGCGGCCGTCGACCCCGAGGCCGTGCTCTCCCACAGCTTCCCCGAGGTCTCCTTCGCCTACGACGAGAGGGATGTGGCGCTGTACGCGCTCGGAGTCGGGGCGTGCGGCGCGGACGCCATCGACGAGAAGGAGCTGCACCTGGTGTACCACAGGGACGGCCAGCCACACATCAAGGCTCTTCCTACTTTTGCTTCTTTATTTCCTTTCAAGAACAGCAATGGGCTTGGAATTGTTGATGTGCCTGGCCTTAACTTTGACGCAAGCCTTCTATTGCATGGTCAACATTACATAGAGATATACAAGCCAATTCATTCGCGTGCCAATGTTGTAAACAAGACCAAGATAGCTGGCTTGCATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTCAAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGAGGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCC AATACTGCATGGTCTCAGGT CCCTTGGATTCGCGATCCGCGCT G                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK071684             [                            TCCCCTTCCACGCCACCTCTCCCCTTCCCACAGTCCCACGTCGTCGCCGGCGACACGCAGACGAACGCGCCCGGCAAACCATGGCGGCGCGATCCGGACCACCAGCCGCGGCCGTCGACCCCGAGGCCGTGCTCTCCCACAGCTTCCCCGAGGTCTCCTTCGCCTACGACGAGAGGGATGTGGCGCTGTACGCGCTCGGAGTCGGGGCGTGCGGCGCGGACGCCATCGACGAGAAGGAGCTGCACCTGGTGTACCACAGGGACGGCCAGCCACACATCAAGGCTCTTCCTACTTTTGCTTCTTTATTTCCTTTCAAGAACAGCAATGGGCTTGGAATTGTTGATGTGCCTGGCCTTAACTTTGACGCAAGCCTTCTATTGCATGGTCAACATTACATAGAGATATACAAGCCAATTCATTCGCGTGCCAATGTTGTAAACAAGACCAAGATAGCTGGCTTGCATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTCAAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGAGGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCC AATACTGCATGGTCTCAGTT CCCTTGGATTCGCGATCCGCGCT GTCATCAAATCTTTCTGCAATGGAGATCCAACAGCAGTGAAAAGCATCTTTGGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAAGGCCAGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCATTGTAAGTGCTGTATCATATTCTTGACTGGATATTTTATAAATTGGTGCCTGCCTGCTTGTATTAGTTTGGTAGTGTGTAGTGGTCAGAAAAGCTAAAGCTTTCCGGGGACATAAAATCAGGTAAATGAAGAGCTTCAGCTACCGCAAGTGGTGGGTTGCCATTGTAATGATAACAAGTGCTCTGCACCTATCTTCAAATGATACATTGCCTAAT                     ]
[+] EMBL CF300293             [                                            CTCTCCCCTT CCACAGTCCCACGTCGTCGCCGGCGACACGCAGACGAACGCGCCCGGCAAACCATGGCGGCGCGATCCGGACCACCCGCCGCGGCCGTCGACCCCGAGGCCGTGCTCTCCCACAGCTTCCCCGAGGTCTCCTTCGCCTACGACGAGAGGGATGTGGCGCTGTACGCGCTCGGAGTCGGGGCGTGCGGCGCGGACGCCATCGACGAGAAGGAGCTGCACCTGGTGTACCACAGGGACGGCCAGCCACACATCAAGGCTCTTCCTACTTTTGCTTCTTTATTTCCTTTCAAGAACAGCAATGGGCTTGGAATTGTTGATGTGCCTGGCCTTAACTTTGACGCAAGCCTTCTATTGCATGGTCAACATTACATAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB670460             [                                                                                                                                                                                                                                                  CGCGGACGCCATCGACGAGAAGGAGCTGCACCTGGTGTACCACAGGGACGGCCAGCCACACATCAAGGCTCTTCCTACTTTTGCTTCTTTATTTCCTTTCAAGAACAGCAATGGGCTTGGAATTGTTGATGTGCCTGGCCTTAACTTTGACGCAAGCCTTCTATTGCATGGTCAACATTACATAGAGATATACAAGCCAATTCATTCGCGTGCCAATGTTGTAAACAAGACCAAGATAGCTGGCTTGCATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTCAAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGAGGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCC AATACTGCATGGTCTCAGTT CCCTTGGATTCGCGATCCGCGCT GTCATCAAATCTTTCTGCAATGGAGATCCAACAGCAGTGAAAAGCATCTTTGGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAAGGCCAGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCATTGTAAGTGCTGTATCAT                                                                                                                                                                                                                          ]
[-] EMBL CB676349             [                                                                                                                                                                                                                                                                                                                                                                                                                                           AGATATACAAGCCAATTCATTCGCGTGCCAATGTTGTAAACAAGACCAAGATAGCTGGCTTGCATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTCAAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGAGGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCC AATACTGCATGGTCTCAGTT CCCTTGGATTCGCGATCCGCGCT GTCATCAAATCTTTCTGCAATGGAGATCCAACAGCAGTGAAAAGCATCTTTGGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAAGGCCAGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCATTGTAAGTGCTGTATCATATTCTTGACTGGATATTTTATAAATTGGTGCCTGCCTGCTTGTATTAGTTTGGTAGTGTGTAGTGGTCAGAAAAGCTAAAGCTTTCCGGGGACATAAAATCAGGTAAATGAAGAGCTTCAGCTACCGCAAGTGGTGGGT                                                                               ]
[+] EMBL CA998459             [                                                                                                                                                                                                                                                                                                                                                                                                                                               ATACAAGCCAATTCATTCGCGTGCCAATGTTGTAAACAAGACCAAGATAGCTGGCTTGCATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTCAAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGAGGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCC AATACTGCATGGTCTCAGTT CCCTTGGATTCGCGATCCGCGCT GTCATCAAATCTTTCTGCAATGGAGATCCAA                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU029862             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGATTGAGACTACAACCCATGTCAAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGAGGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCC AATACTGCATGGTCTCAGTT CCCTTGGATTCGCGAT CGNGCTGGTCATCAAATCTTCCTGCAATGGNGATCC ACAGCAGTGAAAAGCATCTTGGG                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB654367             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACAGGAGTACTATCTACCTGCGTGGTGCTGGAGGCTTTTCTGATCCTTCACGACCATACTCTTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTGTATTCCAAATTCAGCGCCTTCTGCAGTATAGGAAGACCAGACACAACAATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCC AATACTGCATGGTCTCAGTT CCCTTGGATTCGCGATCCGCGCT GTCATCAAATCTTTCTGCAATGGAGATCCAACAGCAGTGAAAAGCATCTTTGGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCATTGAAATGTGGCTCCAAGGCCAGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCATTGTAAGTGCTGTATCATATTCTTGACTGGATATTTTATAAATTGGTGCCTGCCTGCTTGTATTAGTTTGGTAGTGTGTAGTGGTCAGAAAAGCTAAAGCTTTCCGGGGACATAAAATCAGGTAAATGAAGAGCTTCAGCTCCCGCAAGTGGTGGGTTGCCATTGTAATGATAACAAGTGAAGGGGACCTATCTTCAAACGA                                  ]
[+] EMBL CA767189             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACGACAATCCCAGGCACTATTGTACAGGTCATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCC AATACTGCATGGTCTCAGTT CCCTTGGATTCGCGATCCGCGCT GTCATCAAATCTTTCTGCAATGGAGATCCAACAGCAGTGAAAAGCATCTTTGGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAAGGCCAGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCATTGTAAGTGTTGTATCATATTCTTGACTGGATATTTTATAAATTGGTGCCTGCCTGCTTGTATTAGTTTGGTAGTGTGTAGTGGTCAGAAAAGCTAAAGCTTTCCGGGGACATAAAATCAGGTAAATGAAGAGCTTCAGCTACCGCAAGTGGTGGGTTGCCATTGTAATGATAACAAGTGCTCTGCATCTATCTTCAAATGAT                                 ]
[+] EMBL BI806485             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GACACAACAATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCC TTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCCAAATACTGCATGGTCTCAGTTCCCCTTGGATTCGCGATCCGCGCT GTCATCAAATCTTTCTGCAATGGAGATCCAACAGCAGTGAAAAGCATCTTTGGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAAGGCCAGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCATTGTAAGTGCTGTATCATATTCTTGACTGGATATTTTATAAATTGGTGCCTGCCTGCTTGTATTAGTTTGGTAGTGTGTAGTGGTCAGAAAAGCTAAAGCTTTCCGGGGACATAAAATCAGGTAAATGAAGAGCTTCAGCTACCGCAAGTGGTGGGTTGCCATTGTAATGATAACAAGTGCTCTGCACCTATCTTCAAATGATACATTGCCTAATTTCTCTTCTGTAAAAAAAAAA]
[+] EMBL AU094997             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCAAATCTTTCTGCAATGGAGATCCAACAGCNGTGAAAAGCATCTTTGGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAAGGCCAGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCATTGTAAGTGCTGTATCATATTCTTGACTGGATATTTTATAAATTGGTGCCTGCCTGCTTGTATTAGTTTGGTAGTGTGTAGTGGTCAGAAAAGCTAAAGCTTTCCGGGGACATAAAATCAGGTAAATGAAGAGCTTCAG TACCGCAAGTGGTGGGTTGCCATTGTAATGATAACAAGTGCTCTGCACCTATCTTCAAATGATACATTGCCTAATTTCTCTTCTGTAAAAAAA   ]




>consensus_13768#0
TACTACTTGACCACCTCTCCGTCTCTCTTCCCCTTCCACGCCACCTCTCCCCTTCCCACA
GTCCCACGTCGTCGCCGGCGACACGCAGACGAACGCGCCCGGCAAACCATGGCGGCGCGA
TCCGGACCACCCGCCGCGGCCGTCGACCCCGAGGCCGTGCTCTCCCACAGCTTCCCCGAG
GTCTCCTTCGCCTACGACGAGAGGGATGTGGCGCTGTACGCGCTCGGAGTCGGGGCGTGC
GGCGCGGACGCCATCGACGAGAAGGAGCTGCACCTGGTGTACCACAGGGACGGCCAGCCA
CACATCAAGGCTCTTCCTACTTTTGCTTCTTTATTTCCTTTCAAGAACAGCAATGGGCTT
GGAATTGTTGATGTGCCTGGCCTTAACTTTGACGCAAGCCTTCTATTGCATGGTCAACAT
TACATAGAGATATACAAGCCAATTCATTCGCGTGCCAATGTTGTAAACAAGACCAAGATA
GCTGGCTTGCATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTC
AAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGA
GGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCT
CGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCC
CAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTT
GCGCAGGTTGCAGGGTTCACTCGTCCAATACTGCATGGTCTCAGTTCCCTTGGATTCGCG
ATCCGCGCTGTCATCAAATCTTTCTGCAATGGAGATCCAACAGCAGTGAAAAGCATCTTT
GGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAA
GGCCAGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGA
TATGTGTTGCTCAAACACATCCCCTCATCATTGTAAGTGCTGTATCATATTCTTGACTGG
ATATTTTATAAATTGGTGCCTGCCTGCTTGTATTAGTTTGGTAGTGTGTAGTGGTCAGAA
AAGCTAAAGCTTTCCGGGGACATAAAATCAGGTAAATGAAGAGCTTCAGCTACCGCAAGT
GGTGGGTTGCCATTGTAATGATAACAAGTGCTCTGCACCTATCTTCAAATGATACATTGC
CTAATTTCTCTTCTGTAAAAAAAAAA

consensusID : consensus_13768#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 847
fasta sequence

                              [ATATACAAGCCAATTCATTCGCGTGCCAATGTTCCTTACAAGACCAAGATAGCTGGCTTGCATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTCAAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGAGGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCCAATACTGCATGGTCTCAGTTCCCTTGGATTCGCGATCCGCGCTGTCATCAAATCTTTCTGCAATGGAGATCCAACAGCACTGAAAAGCATCTTTGGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTATTCACTGAAATGTGGCTCCAAGGCCGGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCATTGTAAGTGCTGTATCATATTCTTGACTGGATATTTTATAAATTGGTGCCTGCCTGCTTGTATTAGTTTGGGAGTGTGTACTGGTCAGAGAAGCTAAAGCTTTCCGGGGACATAAAATCATGTAAATGAAGAGCTTCATCTACCGCAAGTGGTGGGTTGCCATTGTAATGATAACAAGTGCTCTGCACCCTATCCTTCAATGATACATTGCCTAAAAAAAAAAAAA]

[+] EMBL CB000306             [ATATACAAGCCAATTCATTCGCGTGCCAATGTTCCTTACAAGACCAAGATAGCTGGCTTGCATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTCAAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGAGGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGGTTCACTCGTCCAATACTGCATGGTCTCAGTTCCCTTGGATTCGCGATCCGCGCTGTCATCAAATCTTTCTGCAATGGAGATCCAACAGCACTGAAAAGCATCTTTGGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTATTCACTGAAATGTGGCTCCAAGGCCGGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCATTGTAAGTGCTGTATCATATTCTTGACTGGATATTTTATAAATTGGTGCCTGCCTGCTTGTATTAGTTTGGGAGTGTGTACTGGTCAGAGAAGCTAAAGCTTTCCGGGGACATAAAATCATGTAAATGAAGAGCTTCATCTACCGCAAGTGGTGGGTTGCCATTGTAATGATAACAAGTGCTCTGCACCCTATCCTTCAATGATACATTGCCTAAAAAAAAAAAAA]




>consensus_13768#1
ATATACAAGCCAATTCATTCGCGTGCCAATGTTCCTTACAAGACCAAGATAGCTGGCTTG
CATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTCAAAGATTCT
GGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGAGGCTTTTCT
GATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCTCGCATTTCT
ATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCCCAGGCACTA
TTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTT
GCAGGGTTCACTCGTCCAATACTGCATGGTCTCAGTTCCCTTGGATTCGCGATCCGCGCT
GTCATCAAATCTTTCTGCAATGGAGATCCAACAGCACTGAAAAGCATCTTTGGCCGTTTT
CTTCTGCATGTCTATCCTGGAGAAACTTTATTCACTGAAATGTGGCTCCAAGGCCGGAGG
GTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTG
CTCAAACACATCCCCTCATCATTGTAAGTGCTGTATCATATTCTTGACTGGATATTTTAT
AAATTGGTGCCTGCCTGCTTGTATTAGTTTGGGAGTGTGTACTGGTCAGAGAAGCTAAAG
CTTTCCGGGGACATAAAATCATGTAAATGAAGAGCTTCATCTACCGCAAGTGGTGGGTTG
CCATTGTAATGATAACAAGTGCTCTGCACCCTATCCTTCAATGATACATTGCCTAAAAAA
AAAAAAA

consensusID : consensus_13768#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [AGTTCAGGGGTTTCACTCGTCCAATACTGCATGGTCTCAGTTCCCTTGGATTCGCGATCCGCGCTGTCATCAAATCTTTCTCAATGGAGATCCACACAGTGAAAAGCATCTTTGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAAGGCCACGAGGGTGCTTTATCCAACAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCACTTGTAAATGAAGAGCTTCAGCTACCGCAAGTGGTGGGTTGCCACTTGTAATGATAACAGTGCTCTGCACCTATCTTCAAATGATACACTTGCCTAATTTCTCTTCTGTATATGATTCTTGTTATTTCCTCTCTTTCTTTTTCAAACATTTGAAGGTTTGATAGAAAACGCTGGGCCCATGTAGAAAATTTCATCATTTCCTACGAAATTCATATGCTCTGTACTCTCAAAAAAA]

[+] EMBL BM038500             [AGTTCAGGGGTTTCACTCGTCCAATACTGCATGGTCTCAGTTCCCTTGGATTCGCGATCCGCGCTGTCATCAAATCTTTCTCAATGGAGATCCACACAGTGAAAAGCATCTTTGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAAGGCCACGAGGGTGCTTTATCCAACAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAACACATCCCCTCATCACTTGTAAATGAAGAGCTTCAGCTACCGCAAGTGGTGGGTTGCCACTTGTAATGATAACAGTGCTCTGCACCTATCTTCAAATGATACACTTGCCTAATTTCTCTTCTGTATATGATTCTTGTTATTTCCTCTCTTTCTTTTTCAAACATTTGAAGGTTTGATAGAAAACGCTGGGCCCATGTAGAAAATTTCATCATTTCCTACGAAATTCATATGCTCTGTACTCTCAAAAAAA]




>consensus_13768#2
AGTTCAGGGGTTTCACTCGTCCAATACTGCATGGTCTCAGTTCCCTTGGATTCGCGATCC
GCGCTGTCATCAAATCTTTCTCAATGGAGATCCACACAGTGAAAAGCATCTTTGCCGTTT
TCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAAGGCCACGA
GGGTGCTTTATCCAACAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTT
GCTCAAACACATCCCCTCATCACTTGTAAATGAAGAGCTTCAGCTACCGCAAGTGGTGGG
TTGCCACTTGTAATGATAACAGTGCTCTGCACCTATCTTCAAATGATACACTTGCCTAAT
TTCTCTTCTGTATATGATTCTTGTTATTTCCTCTCTTTCTTTTTCAAACATTTGAAGGTT
TGATAGAAAACGCTGGGCCCATGTAGAAAATTTCATCATTTCCTACGAAATTCATATGCT
CTGTACTCTCAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13768#0      TACTACTTGACCACCTCTCCGTCTCTCTTCCCCTTCCACGCCACCTCTCCCCTTCCCACA 60
consensus_13768#1      ------------------------------------------------------------
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      GTCCCACGTCGTCGCCGGCGACACGCAGACGAACGCGCCCGGCAAACCATGGCGGCGCGA 120
consensus_13768#1      ------------------------------------------------------------
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      TCCGGACCACCCGCCGCGGCCGTCGACCCCGAGGCCGTGCTCTCCCACAGCTTCCCCGAG 180
consensus_13768#1      ------------------------------------------------------------
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      GTCTCCTTCGCCTACGACGAGAGGGATGTGGCGCTGTACGCGCTCGGAGTCGGGGCGTGC 240
consensus_13768#1      ------------------------------------------------------------
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      GGCGCGGACGCCATCGACGAGAAGGAGCTGCACCTGGTGTACCACAGGGACGGCCAGCCA 300
consensus_13768#1      ------------------------------------------------------------
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      CACATCAAGGCTCTTCCTACTTTTGCTTCTTTATTTCCTTTCAAGAACAGCAATGGGCTT 360
consensus_13768#1      ------------------------------------------------------------
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      GGAATTGTTGATGTGCCTGGCCTTAACTTTGACGCAAGCCTTCTATTGCATGGTCAACAT 420
consensus_13768#1      ------------------------------------------------------------
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      TACATAGAGATATACAAGCCAATTCATTCGCGTGCCAATGTTGTAAACAAGACCAAGATA 480
consensus_13768#1      ---------ATATACAAGCCAATTCATTCGCGTGCCAATGTTCCTTACAAGACCAAGATA 51
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      GCTGGCTTGCATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTC 540
consensus_13768#1      GCTGGCTTGCATGACAAAGGGAAAGCAACTATTCTTGAGATTGAGACTACAACCCATGTC 111
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      AAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGA 600
consensus_13768#1      AAAGATTCTGGTGAAGTTTTATGTATGAACAGGAGTACTATCTACCTGCGTGGTGCTGGA 171
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      GGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCT 660
consensus_13768#1      GGCTTTTCTGATCCTTCACGACCATACTCCTATGCTAGTTATCCCACTAACCAGGTTTCT 231
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      CGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCC 720
consensus_13768#1      CGCATTTCTATTCCAAATTCAGCGCCTTCTGCAGTATATGAAGACCAGACACAACAATCC 291
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      CAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTT 780
consensus_13768#1      CAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTT 351
consensus_13768#2      ------------------------------------------------------------
                                                                                   

consensus_13768#0      GCGCAGGTTGCAGGGTTCACTCGTCCAATACTGCATGGTCTCAGTTCCCTTGGATTCGCG 840
consensus_13768#1      GCGCAGGTTGCAGGGTTCACTCGTCCAATACTGCATGGTCTCAGTTCCCTTGGATTCGCG 411
consensus_13768#2      ----AGTTCAGGGGTTTCACTCGTCCAATACTGCATGGTCTCAGTTCCCTTGGATTCGCG 56
                           ** *    ** *********************************************

consensus_13768#0      ATCCGCGCTGTCATCAAATCTTTCTGCAATGGAGATCCAACAGCAGTGAAAAGCATCTTT 900
consensus_13768#1      ATCCGCGCTGTCATCAAATCTTTCTGCAATGGAGATCCAACAGCACTGAAAAGCATCTTT 471
consensus_13768#2      ATCCGCGCTGTCATCAAATCTTTCT-CAATGGAGATCCA--CACAGTGAAAAGCATCTTT 113
                       ************************* *************    ** **************

consensus_13768#0      GGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAA 960
consensus_13768#1      GGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTATTCACTGAAATGTGGCTCCAA 531
consensus_13768#2      G-CCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGCTCCAA 172
                       * ************************************* ********************

consensus_13768#0      GGCCA-GAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGG 1019
consensus_13768#1      GGCCG-GAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGG 590
consensus_13768#2      GGCCACGAGGGTGCTTTATCCAACAA-GGTCAAGGAACGCAACCGCGCCGTGCTTTCTGG 231
                       ****  ************** ***** *********************************

consensus_13768#0      ATATGTGTTGCTCAAACACATCCCCTCATCA-TTGTAAGTGCTGTATCATATTCTTGACT 1078
consensus_13768#1      ATATGTGTTGCTCAAACACATCCCCTCATCA-TTGTAAGTGCTGTATCATATTCTTGACT 649
consensus_13768#2      ATATGTGTTGCTCAAACACATCCCCTCATCACTTGTAAATGAAGAGCTTCAGCTACCGCA 291
                       ******************************* ****** **  *      *       * 

consensus_13768#0      GGATATTTTATAAATTGGTGCCTGCC-TGCTTGTATTAGTTTGGTAGTGTGTAGTGGTCA 1137
consensus_13768#1      GGATATTTTATAAATTGGTGCCTGCC-TGCTTGTATTAGTTTGGGAGTGTGTACTGGTCA 708
consensus_13768#2      AG-----TGGTGGGTTGCCACTTGTAATGATAACAGTGCTCTGCACCTATCTTCAAATGA 346
                        *     *  *   ***   * **   ** *   * *  * **    * * *     * *

consensus_13768#0      GAAA---AGCTAAAGCTTTCCGGGGACATAAAATCAGGTAAATGAAGAGCTTCAGCTACC 1194
consensus_13768#1      GAGA---AGCTAAAGCTTTCCGGGGACATAAAATCATGTAAATGAAGAGCTTCATCTACC 765
consensus_13768#2      TACACTTGCCTAATTTCTCTTCTGTATATGAT-TCTTGTTATTTCCTCTCTTTCTTTTTC 405
                        * *     ****    *     * * ** *  **  ** * *      ***    *  *

consensus_13768#0      G--CAAGTGGTGGGTTGCCATTGTAATGATAACAAGTGCTCTGCACC-TATCTTCAAATG 1251
consensus_13768#1      G--CAAGTGGTGGGTTGCCATTGTAATGATAACAAGTGCTCTGCACCCTATCCTTCAATG 823
consensus_13768#2      AAACATTTGAAGGTTTGATAGAAAACGCTGGGCCCATGTAGAAAATTTCATCATTTCCTA 465
                          **  **  ** ***  *    *       *   **      *    *** *    * 

consensus_13768#0      ATACATTGCCTAATTTCTCTTCTGTAAAAAAAAAA 1286
consensus_13768#1      ATACATTGCCTAAA-----------AAAAAAAAAA 847
consensus_13768#2      CGAAATT-CATATGCTCTGTACTCTCAAAAAAA-- 497
                         * *** * **              *******