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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1742 fasta sequence
[CGTCTCCTCGAAGCTTTCTCCCAAACTGCTCGTCCATGGCGTTCGCCACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCG-GCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCT-CGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCA-GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG-ACAACGGAGCCAAGTAAGCTACGGCAGGTGG-GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTAATGTTTGTTTCGACAGGCTCTCATGAATTGCCATGGTGGTTGCTTGGTGCTTGGTAATGAGGACCTACAGTTTTGTCATAG]
[+] EMBL AK111656 [CGTCTCCTCGAAGCTTTCTCCCAAACTGCTCGTCCATGGCGTTCGCCACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCG GCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCT CGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCA GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGGATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTAA ]
[+] EMBL CB646657 [ TCGTCCATGGCGTTCGCCACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCG GCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTG ]
[+] EMBL CB620064 [ TCGTCCATCCTGTAAAGCACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCG GCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCTATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCCACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGG ]
[+] EMBL CB650517 [ TCGCCACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCGTGCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCT CGAATGC ]
[+] EMBL CB639299 [ CACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCG GCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCACGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGACGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAATGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAAGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGGTATcattcc ]
[+] EMBL BE229741 [ ATGATGCTNTCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGAT TATGCAACCTGGTGGCGGGGGAAAACCCCCANAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAAAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGANGATCGGANATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGANTCCANGCTTAAGAANGCCGTACAACNGGCANTAAAAAGANATGAATATGTTAGCACAAANCATATAAGGAAGCAACTTTTANCT CGGGCAAANA CCAAATCANAACTATGCCTCA CA NGTC ]
[-] EMBL CB650518 [ GCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCT CGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCA GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTTTGAAGGGCAAACCAAAGAAAATTGTAGTTCCGAAGAA ]
[+] EMBL CB644041 [ ATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCT CGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCA GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTA ]
[-] EMBL CB620065 [ GTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCT CGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCA GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTAATGTTTGTTTCGACAGGCTCTCATGAATTGCCATGGTGGTTGCTTGGTGCTTGGTAATGAGGACCTACAGTTTTGTCATAG]
[-] EMBL CB646658 [ atTATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCTGGGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCAGGGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTAATGTTTGTTTCGACAGGCTCTCATGAATTGCCATGGTGGTTGCTTGGTACT ]
[-] EMBL AW070018 [ cccggGCG GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAAT ]
[+] EMBL BQ905982 [ gtTGTGAACAACGGAGCCAAGTAAGCTAC GCAGTTGGTGTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTA CAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAAaaaa ]
consensusID : consensus_13789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1416 fasta sequence
[CGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGATGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGGTATCATTCCGTATGCTGAGCTGTATGTCCTCCATATGACTAATTACTGGACATTCTTTTAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCTCGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCAGGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTGACAACGGAGCCAAGTAAGCTACGGCAGGTGGGTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATTCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTA]
[+] EMBL AK112038 [CGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGATGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGGTATCATTCCGTATGCTGAGCTGTATGTCCTCCATATGACTAATTACTGGACATTCTTTTAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCTCGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCAGGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTGACAACGGAGCCAAGTAAGCTACGGCAGGTGGGTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATTCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTA]
consensusID : consensus_13789#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 144 fasta sequence
[CATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCCGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATAAAAAAAAAAAAAAAAA]
[-] EMBL CF302476 [CATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCCGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13789#0 CGTCTCCTCGAAGCTTTCTCCCAAACTGCTCGTCCATGGCGTTCGCCACACTGGTGGGAG 60
consensus_13789#1 ------------------------------------------------------------
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 TGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCA 120
consensus_13789#1 ------------------------------------------------------------
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 CCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCGGCGGCATG 180
consensus_13789#1 ------------------------------------------------------------
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 GCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACT 240
consensus_13789#1 ------------------------------------------------------------
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 CACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACG 300
consensus_13789#1 ------------------------------------------------------------
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 ATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATG 360
consensus_13789#1 -------CGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATG 53
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 GTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTC 420
consensus_13789#1 ATGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTC 113
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 TTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACT 480
consensus_13789#1 TTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACT 173
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 GGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGT 540
consensus_13789#1 GGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGT 233
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 GGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCAC 600
consensus_13789#1 GGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCAC 293
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 CCCATCCCCCCTTCTTCCATGCTGCACAG------------------------------- 629
consensus_13789#1 CCCATCCCCCCTTCTTCCATGCTGCACAGGTATCATTCCGTATGCTGAGCTGTATGTCCT 353
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 -------------------------------ATATGGAACCATGATTTCTATTGGCGATC 658
consensus_13789#1 CCATATGACTAATTACTGGACATTCTTTTAGATATGGAACCATGATTTCTATTGGCGATC 413
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 TATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGA 718
consensus_13789#1 TATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGA 473
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 CTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGG 778
consensus_13789#1 CTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGG 533
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 TTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAG 838
consensus_13789#1 TTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAG 593
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 CCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAA 898
consensus_13789#1 CCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAA 653
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 TCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTA 958
consensus_13789#1 TCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTA 713
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 CCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTC 1018
consensus_13789#1 CCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTC 773
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 ATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGA 1078
consensus_13789#1 ATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGA 833
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 ATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCTCGGGCAAAGAGCCAAATCAG 1138
consensus_13789#1 ATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCTCGGGCAAAGAGCCAAATCAG 893
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 AGCTATGCCTCAGCAGGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTC 1198
consensus_13789#1 AGCTATGCCTCAGCAGGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTC 953
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 CCTAGGGGTGTGACAACGGAGCCAAGTAAGCTACGGCAGGTGGGTCATGTTGCCGAGTTG 1258
consensus_13789#1 CCTAGGGGTGTGACAACGGAGCCAAGTAAGCTACGGCAGGTGGGTCATGTTGCCGAGTTG 1013
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 AACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGG 1318
consensus_13789#1 AACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGG 1073
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 TAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATG 1378
consensus_13789#1 TAGCAGTATTCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATG 1133
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 TTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTG 1438
consensus_13789#1 TTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTG 1193
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 ACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGA 1498
consensus_13789#1 ACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGA 1253
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 GTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCC 1558
consensus_13789#1 GTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCC 1313
consensus_13789#2 ------------------CATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCC 42
******************************************
consensus_13789#0 TGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCA 1618
consensus_13789#1 TGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCA 1373
consensus_13789#2 TGACATCTTGTATTCCCGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCA 102
**************** *******************************************
consensus_13789#0 AAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTAATGTTTGTTTCGACAGG 1678
consensus_13789#1 AAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTA----------------- 1416
consensus_13789#2 AAGAAAATTGTAGTTCCGAAGAAATAAAAAAAAAAAAAAAAA------------------ 144
************************** * * *
consensus_13789#0 CTCTCATGAATTGCCATGGTGGTTGCTTGGTGCTTGGTAATGAGGACCTACAGTTTTGTC 1738
consensus_13789#1 ------------------------------------------------------------
consensus_13789#2 ------------------------------------------------------------
consensus_13789#0 ATAG 1742
consensus_13789#1 ----
consensus_13789#2 ----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||