cluster # 1379

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Oryza sativa
cluster # 1379 cluster # 1379 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1379#0 length = 629 sequences # 1

consensus_1379#1 length = 587 sequences # 1

consensusID : consensus_1379#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [TGCCAGAACGAGGTGAATTGGGAACGAGATGCAGACCAGGGACGGCGAGTGGGTCCTCGTCGAGCCGTCGCCGACGTCGCTCATCGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAACGACCGTCTGCACGCGCCATTTCATCGGATAATGGTGAGCGGGCATGCCACGAGGTACACCTGCATGCTCTTCTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTCGTCGACGAGTGCCACCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGCTTCTGCGTTTCTGAAGAAGGAGCTCGCCACGAGGATAAACTCAAGGCCTTCTGTGGCTTATAGCCTATAGGCAACATCAGAATCTGCAGCTGGTTGATCCCCAATAAGGTGCACTATCAAACAAAGTAACCTGGACATCTTGCACAGGCCAAATAGGATATCGGTTTTGTTGCCTGGCCGTTTTTTTTGTTAACTTTCCGGGGAAAAGGAGGTTTTCCCATTTTTACCCCCCCCCCCCCCCCCGGTTTGGGGGCCGTTTGCCCCCCTTTGTATGTGAACTTTGTTCGGCTATACTTGTACTTCATCGCTCAGGTCAAACAAACACCTTGCTTCCCCAAAA]

[+] EMBL BM419136             [TGCCAGAACGAGGTGAATTGGGAACGAGATGCAGACCAGGGACGGCGAGTGGGTCCTCGTCGAGCCGTCGCCGACGTCGCTCATCGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAACGACCGTCTGCACGCGCCATTTCATCGGATAATGGTGAGCGGGCATGCCACGAGGTACACCTGCATGCTCTTCTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTCGTCGACGAGTGCCACCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGCTTCTGCGTTTCTGAAGAAGGAGCTCGCCACGAGGATAAACTCAAGGCCTTCTGTGGCTTATAGCCTATAGGCAACATCAGAATCTGCAGCTGGTTGATCCCCAATAAGGTGCACTATCAAACAAAGTAACCTGGACATCTTGCACAGGCCAAATAGGATATCGGTTTTGTTGCCTGGCCGTTTTTTTTGTTAACTTTCCGGGGAAAAGGAGGTTTTCCCATTTTTACCCCCCCCCCCCCCCCCGGTTTGGGGGCCGTTTGCCCCCCTTTGTATGTGAACTTTGTTCGGCTATACTTGTACTTCATCGCTCAGGTCAAACAAACACCTTGCTTCCCCAAAA]




>consensus_1379#0
TGCCAGAACGAGGTGAATTGGGAACGAGATGCAGACCAGGGACGGCGAGTGGGTCCTCGT
CGAGCCGTCGCCGACGTCGCTCATCGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAA
CGACCGTCTGCACGCGCCATTTCATCGGATAATGGTGAGCGGGCATGCCACGAGGTACAC
CTGCATGCTCTTCTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTCGTCGACGA
GTGCCACCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGCTTCTGCGTTTC
TGAAGAAGGAGCTCGCCACGAGGATAAACTCAAGGCCTTCTGTGGCTTATAGCCTATAGG
CAACATCAGAATCTGCAGCTGGTTGATCCCCAATAAGGTGCACTATCAAACAAAGTAACC
TGGACATCTTGCACAGGCCAAATAGGATATCGGTTTTGTTGCCTGGCCGTTTTTTTTGTT
AACTTTCCGGGGAAAAGGAGGTTTTCCCATTTTTACCCCCCCCCCCCCCCCCGGTTTGGG
GGCCGTTTGCCCCCCTTTGTATGTGAACTTTGTTCGGCTATACTTGTACTTCATCGCTCA
GGTCAAACAAACACCTTGCTTCCCCAAAA

consensusID : consensus_1379#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [GGCCAGACAAGGGGGTCCTTGTTGAGCCGTTTCCGAAGTCGCTTATTGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAACGACCGTCTGCACGGGCCATTTTATCGGATAATGGTGAGCGGGCATGCCCCGAGGTACACCTGCATGCTTTTTTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTTGTTGACGAGTGCCCCCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGGTTTTGCGTTTTTGAAAAAGGAGCTCGCCCCGAGGATAAACTCAAGGCCTTTTGTGGGTTATAGCCTATAGGCAACATCAGAATTTGCAGCTGGTTGATCCCCAATAAGGTGCCCTATCAAACAAAATAACCCTGGACATTTTGCACAGGCCAAATAGGAAATCGGTTTTGTGCTGCGTTTTGTACTTCGGGAAGAGTTCATTACCGTGGCGTGCTGTATGTGAACTTTGTTTGGCTATACTTGTACTTTATTGTCAGGTCAAACAAACCCCTTGCTTTCCCAACCATTTTTCAGCATAGCAACAAGCCTTGTTATTAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA762073             [GGCCAGACAAGGGGGTCCTTGTTGAGCCGTTTCCGAAGTCGCTTATTGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAACGACCGTCTGCACGGGCCATTTTATCGGATAATGGTGAGCGGGCATGCCCCGAGGTACACCTGCATGCTTTTTTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTTGTTGACGAGTGCCCCCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGGTTTTGCGTTTTTGAAAAAGGAGCTCGCCCCGAGGATAAACTCAAGGCCTTTTGTGGGTTATAGCCTATAGGCAACATCAGAATTTGCAGCTGGTTGATCCCCAATAAGGTGCCCTATCAAACAAAATAACCCTGGACATTTTGCACAGGCCAAATAGGAAATCGGTTTTGTGCTGCGTTTTGTACTTCGGGAAGAGTTCATTACCGTGGCGTGCTGTATGTGAACTTTGTTTGGCTATACTTGTACTTTATTGTCAGGTCAAACAAACCCCTTGCTTTCCCAACCATTTTTCAGCATAGCAACAAGCCTTGTTATTAAAAAAAAAAAAAAAAAAAA]




>consensus_1379#1
GGCCAGACAAGGGGGTCCTTGTTGAGCCGTTTCCGAAGTCGCTTATTGTCAACGTCGGCA
ATGCCCTCCGGGCATGGACAAACGACCGTCTGCACGGGCCATTTTATCGGATAATGGTGA
GCGGGCATGCCCCGAGGTACACCTGCATGCTTTTTTCCTCCCCCAATTTCATGATCCAGG
TACCTAACGAGCTTGTTGACGAGTGCCCCCCTCCCCGTTTCAAGACGCATGACAACGACG
ATTTCATTCGGTTTTGCGTTTTTGAAAAAGGAGCTCGCCCCGAGGATAAACTCAAGGCCT
TTTGTGGGTTATAGCCTATAGGCAACATCAGAATTTGCAGCTGGTTGATCCCCAATAAGG
TGCCCTATCAAACAAAATAACCCTGGACATTTTGCACAGGCCAAATAGGAAATCGGTTTT
GTGCTGCGTTTTGTACTTCGGGAAGAGTTCATTACCGTGGCGTGCTGTATGTGAACTTTG
TTTGGCTATACTTGTACTTTATTGTCAGGTCAAACAAACCCCTTGCTTTCCCAACCATTT
TTCAGCATAGCAACAAGCCTTGTTATTAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1379#0      TGCCAGAACGAGGTGAATTGGGAACGAGATGCAGACCAGGGACGGCGAGTGGGTCCTCGT 60
consensus_1379#1      --------------------------------------GGCCAGACAAGGGGGTCCTTGT 22
                                                            **   * * ** ******* **

consensus_1379#0      CGAGCCGTCGCCGACGTCGCTCATCGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAA 120
consensus_1379#1      TGAGCCGTTTCCGAAGTCGCTTATTGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAA 82
                       *******  **** ****** ** ***********************************

consensus_1379#0      CGACCGTCTGCACGCGCCATTTCATCGGATAATGGTGAGCGGGCATGCCACGAGGTACAC 180
consensus_1379#1      CGACCGTCTGCACGGGCCATTTTATCGGATAATGGTGAGCGGGCATGCCCCGAGGTACAC 142
                      ************** ******* ************************** **********

consensus_1379#0      CTGCATGCTCTTCTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTCGTCGACGA 240
consensus_1379#1      CTGCATGCTTTTTTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTTGTTGACGA 202
                      ********* ** ************************************** ** *****

consensus_1379#0      GTGCCACCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGCTTCTGCGTTTC 300
consensus_1379#1      GTGCCCCCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGGTTTTGCGTTTT 262
                      ***** ****************************************** ** ******* 

consensus_1379#0      TGAAGAAGGAGCTCGCCACGAGGATAAACTCAAGGCCTTCTGTGGCTTATAGCCTATAGG 360
consensus_1379#1      TGAAAAAGGAGCTCGCCCCGAGGATAAACTCAAGGCCTTTTGTGGGTTATAGCCTATAGG 322
                      **** ************ ********************* ***** **************

consensus_1379#0      CAACATCAGAATCTGCAGCTGGTTGATCCCCAATAAGGTGCACTATCAAACAAAGTAACC 420
consensus_1379#1      CAACATCAGAATTTGCAGCTGGTTGATCCCCAATAAGGTGCCCTATCAAACAAAATAACC 382
                      ************ **************************** ************ *****

consensus_1379#0      -TGGACATCTTGCACAGGCCAAATAGGATATCGGTTTTGTTGCCTGGCCGTTTTTTTTGT 479
consensus_1379#1      CTGGACATTTTGCACAGGCCAAATAGGAAATCGGTTTTGT-GCTGCGTTTTGTACTTCGG 441
                       ******* ******************* *********** **   *   * *  ** * 

consensus_1379#0      TAA-----CTTTCCGGGGAAAAGGAGGTTTTCCCATTTTTACCCCCCCCCCCCCCCCCGG 534
consensus_1379#1      GAAGAGTTCATTACCGTGGCGTGCTGTATGTGAACTTTGTTTGGCTATACTTGTACTTTA 501
                       **     * ** * * *    *  *  * *    *** *    *    *     *    

consensus_1379#0      TTTGGGGGCCGTTTGCCCCCCTTTGTATGTGAACTTTGTTCGGCTATACTTGTA--CTTC 592
consensus_1379#1      TTGTCAGGTCAAACAAACCCCTTGCTTTCCCAACCATTTTTCAGCATAGCAACAAGCCTT 561
                      **    ** *       ******  * *   ***  * **     ***     *  * * 

consensus_1379#0      ATCGCTCAGGTCAAACAAACACCTTGCTTCCCCAAAA 629
consensus_1379#1      GTTATTAAAAAAAAAAAAAAAAAAAA----------- 587
                       *   * *    *** *** *