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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 652 fasta sequence
[TCACAGCTCAGTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT-GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC-TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC-GGCCGCGCCGTC-CCGG-TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT--AAAAATCAACAAGATGATGCGATTGTTGCACGGAAAAAATTAAAAAA]
[+] EMBL AK103599 [TCACAGCTCAGTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT AAAAATCAACAAGATGATGCGAT ]
[+] EMBL C72369 [ GTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGCTTCAAGGACCAGGCGGGGCTGTNCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGGGCGCCGCCGCCGCCAAGCAGGTCACCNGGCCGCGCCGTT CCGGTTGTCGCTGTCGTCGna ]
[+] EMBL C29030 [ GTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTNGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTNCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGNG CGTC CCGG TNTCGCTGTC ]
[+] EMBL OSC25211 [ CCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTNCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAG ]
[+] EMBL OSC25201 [ CCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAG ]
[+] EMBL C97737 [ CACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGTNGAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGC N TCAAGGACCAGGCGGGGCTGTGCGGATNGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGNCGTCGCCAAGCAGGTCACC GGCCGCGC TCNCCGG TGTCGCTGT ]
[+] EMBL C97701 [ CACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGTCGNCGCCAAGCAGGTCACC GGCCGCGGCGTC CCGG TGTCGCTGTCGTCGCAGNCGGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGCAAGGGCCG CAGGTCGAAGAGGTCGGAGGAGGAGAAG TTNAGAAGGCGTATCA CTCGTCTG TTGGGACCTAATT AAATCTGTT TT NAATTCG ]
[+] EMBL AU197759 [ ACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCG ]
[+] EMBL OSC21191 [ ACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGNCGCCGACGNCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGC GCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGAAG AGGCGTATCA CTCGTCT ]
[-] EMBL BI306328 [ AAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTTGTCGTCGTTGAGCAAGAAGGCGTTGTCGTTCGTGGTGACGGAGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCTGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGAGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGAGTGCGGCAGGGCCGCCAGGTCGAAAAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTGTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTT CCCATCTGATTCTGATGGTGAATTGCTATGTGCAAACTACGGAGTAAAAAAATCCACAAGAAGATGCGATTGTTGCAtg ]
[+] EMBL AU070172 [ AGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACT ]
[+] EMBL AU173098 [ GGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT AAAAATCAACAAGATGATGCGATTGTTGCACGGAAAAAA ]
[+] EMBL AU197760 [ TCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT AAAAATCAACAAGATGATGCGATTGTTGCACGGAATTAATTAAAAAA]
consensusID : consensus_13797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence
[CTCNTCTCCCGCCNCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGGGTATCNCCTCGTNTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCNCCCNAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTNTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATNTGATTNTGATGGAGAATTGCTAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU182256 [CTCNTCTCCCGCCNCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGGGTATCNCCTCGTNTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCNCCCNAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTNTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATNTGATTNTGATGGAGAATTGCTAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13797#0 TCACAGCTCAGTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGC 60
consensus_13797#1 ------------------------------------------------------------
consensus_13797#0 GTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGTGAAGATGAGCTCGTCG 120
consensus_13797#1 ------------------------------------------------------------
consensus_13797#0 TCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCG 180
consensus_13797#1 ------------------------------------------------------------
consensus_13797#0 CTCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGC 240
consensus_13797#1 ------------------------------------------------------------
consensus_13797#0 GCCGCCGCCGCCAAGCAGGTCACCGGCCGCGCCGTCCCGGTGTCGCTGTCGTCGCAGACC 300
consensus_13797#1 ------------------------------------------------------------
consensus_13797#0 GGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAG 360
consensus_13797#1 -----------------CTCNTCTCCCGCCNCCGCGTGCGGCAGGGCCGCCAGGTCGAAG 43
*** ********* *****************************
consensus_13797#0 AGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAA 420
consensus_13797#1 AGGTCGGAGGAGGAGAAGATGCAGAAGGGGTATCNCCTCGTNTGCTGGGGACCTAATTAA 103
**************************** ***** ****** ******************
consensus_13797#0 AATCTGTTCTTCAAATTCGTGATTTCGTG-TAGTAGTTTTTTCGTTTGCAATTTGTCCAC 479
consensus_13797#1 AATCTGTTCTTCAAATTCGTGATTTCNCCCNAGTAGTTTTTTCGTTTGCAATTTGTCCAC 163
************************** *****************************
consensus_13797#0 CCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCC 539
consensus_13797#1 CCCTCATTTTNTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCC 223
********** *************************************************
consensus_13797#0 GTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTA 599
consensus_13797#1 GTTTTCATGTACTACTACTTCCCCATNTGATTNTGATGGAGAATTGCTAAAAAAAAAAAA 283
************************** ***** **************** *** *
consensus_13797#0 CGGAGTAAAAATCAACAAGATGATGCGATTGTTGCACGGAAAAAATTAAAAAA 652
consensus_13797#1 AAAAAAAAAAA------------------------------------------ 294
* *****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||