These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 652 fasta sequence [TCACAGCTCAGTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT-GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC-TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC-GGCCGCGCCGTC-CCGG-TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT--AAAAATCAACAAGATGATGCGATTGTTGCACGGAAAAAATTAAAAAA] [+] EMBL AK103599 [TCACAGCTCAGTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT AAAAATCAACAAGATGATGCGAT ] [+] EMBL C72369 [ GTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGCTTCAAGGACCAGGCGGGGCTGTNCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGGGCGCCGCCGCCGCCAAGCAGGTCACCNGGCCGCGCCGTT CCGGTTGTCGCTGTCGTCGna ] [+] EMBL C29030 [ GTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTNGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTNCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGNG CGTC CCGG TNTCGCTGTC ] [+] EMBL OSC25211 [ CCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTNCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAG ] [+] EMBL OSC25201 [ CCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAG ] [+] EMBL C97737 [ CACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGTNGAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGC N TCAAGGACCAGGCGGGGCTGTGCGGATNGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGNCGTCGCCAAGCAGGTCACC GGCCGCGC TCNCCGG TGTCGCTGT ] [+] EMBL C97701 [ CACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGTCGNCGCCAAGCAGGTCACC GGCCGCGGCGTC CCGG TGTCGCTGTCGTCGCAGNCGGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGCAAGGGCCG CAGGTCGAAGAGGTCGGAGGAGGAGAAG TTNAGAAGGCGTATCA CTCGTCTG TTGGGACCTAATT AAATCTGTT TT NAATTCG ] [+] EMBL AU197759 [ ACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCG ] [+] EMBL OSC21191 [ ACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGNCGCCGACGNCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGC GCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGAAG AGGCGTATCA CTCGTCT ] [-] EMBL BI306328 [ AAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTTGTCGTCGTTGAGCAAGAAGGCGTTGTCGTTCGTGGTGACGGAGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCTGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGAGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGAGTGCGGCAGGGCCGCCAGGTCGAAAAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTGTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTT CCCATCTGATTCTGATGGTGAATTGCTATGTGCAAACTACGGAGTAAAAAAATCCACAAGAAGATGCGATTGTTGCAtg ] [+] EMBL AU070172 [ AGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACT ] [+] EMBL AU173098 [ GGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT AAAAATCAACAAGATGATGCGATTGTTGCACGGAAAAAA ] [+] EMBL AU197760 [ TCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT AAAAATCAACAAGATGATGCGATTGTTGCACGGAATTAATTAAAAAA] consensusID : consensus_13797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [CTCNTCTCCCGCCNCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGGGTATCNCCTCGTNTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCNCCCNAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTNTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATNTGATTNTGATGGAGAATTGCTAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU182256 [CTCNTCTCCCGCCNCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGGGTATCNCCTCGTNTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCNCCCNAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTNTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATNTGATTNTGATGGAGAATTGCTAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13797#0 TCACAGCTCAGTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGC 60 consensus_13797#1 ------------------------------------------------------------ consensus_13797#0 GTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGTGAAGATGAGCTCGTCG 120 consensus_13797#1 ------------------------------------------------------------ consensus_13797#0 TCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCG 180 consensus_13797#1 ------------------------------------------------------------ consensus_13797#0 CTCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGC 240 consensus_13797#1 ------------------------------------------------------------ consensus_13797#0 GCCGCCGCCGCCAAGCAGGTCACCGGCCGCGCCGTCCCGGTGTCGCTGTCGTCGCAGACC 300 consensus_13797#1 ------------------------------------------------------------ consensus_13797#0 GGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAG 360 consensus_13797#1 -----------------CTCNTCTCCCGCCNCCGCGTGCGGCAGGGCCGCCAGGTCGAAG 43 *** ********* ***************************** consensus_13797#0 AGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAA 420 consensus_13797#1 AGGTCGGAGGAGGAGAAGATGCAGAAGGGGTATCNCCTCGTNTGCTGGGGACCTAATTAA 103 **************************** ***** ****** ****************** consensus_13797#0 AATCTGTTCTTCAAATTCGTGATTTCGTG-TAGTAGTTTTTTCGTTTGCAATTTGTCCAC 479 consensus_13797#1 AATCTGTTCTTCAAATTCGTGATTTCNCCCNAGTAGTTTTTTCGTTTGCAATTTGTCCAC 163 ************************** ***************************** consensus_13797#0 CCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCC 539 consensus_13797#1 CCCTCATTTTNTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCC 223 ********** ************************************************* consensus_13797#0 GTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTA 599 consensus_13797#1 GTTTTCATGTACTACTACTTCCCCATNTGATTNTGATGGAGAATTGCTAAAAAAAAAAAA 283 ************************** ***** **************** *** * consensus_13797#0 CGGAGTAAAAATCAACAAGATGATGCGATTGTTGCACGGAAAAAATTAAAAAA 652 consensus_13797#1 AAAAAAAAAAA------------------------------------------ 294 * ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||