These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 594 fasta sequence [TCCTGGGGGAGCTCGAGCAATCCGCCGTCCGTGTCGTCGTCGTCGGCGTCGGCGAGGTCGTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCGAGGCGAG-GC-GGGGGGAG-CCCGGAATCAGGAAGATGACTCGCGGCAACCAGAGGGACCGCGACCGCGAGCGCGCGCAGGCGCGGAAGCCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCC-GCGAGAGGGATAAGAAGGCGCTGGAGGAGAAGGCCGCGAAGAAGGCGGCGCAGGCC-GC-GG-GCGGC-GGGACCTCCACGGAC-AACAAGAATAAGGCCGGCGGCGCAAAGAAGTAACCGGCACCGGCGACACGTCTGTACGATTAGTAATGCCTTATAAGCTTTGTACCTCATGCATCTGCGTATCCGTGTGCCTTAACTCTTGTTACTCTGTCTCGTTAGATGCGGTATTTGTTGGGTCATAAATCTGTCTCATTAGATGCGGTATTTGTTGGGTCATAAATCTGTCATCTGTAAGCTTCAAATACTGAATATGATGATAATAATATGC-GTGTTCTGGTGGTTTTCTGGGT------AAAAAAAAAAAAAAAAAAAA] [+] EMBL AU173037 [TCCTGGGGGAGCTCGAGCAATCCGCCGTCCGTGTCGTCGTCGTCGGCGTCGGCGAGGTCGTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCGAGGCGAG GC GGGGGGAG CCCGGAATCAGGAAGATGACTCGCGGCAACCAGAGGGACCGCGACCGCGAGCGCGCGCAGGCGCGGAAGCCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCC GCGAGAGGGATAAGAAGGCGCTGGAGGAGAAGGCCGCGAAGAAGGCGGCGCAGGCC GC GG GCGGC GGGACCTCCACGGAC AACAAGAATAAGGCCGGCGGCGCAAAGAAGTAACCGGCACCGGCGACACGTCTGTACGATTAGTAATGCCTTATAAGCTTTGTACCTCATGCATCTGCGTATCCGTGTGCCTTAACTCTTGTTAC ] [+] EMBL AU065879 [ gaGGAGCTCGAGCAATCCGCCGTCCGTNTCGTCGTCGTCGGCGTCGGCGAGGTCGTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCGAGGCGAG GC GGGGGGAG CCCGGAATCAGGAAGATGACTCGCGGCAACCAGAGGGACCGCGACCGCNAGCNCGCGCAGGCGGNAAAGCCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCC GCGAGAGGGATAAGAAGGCGCTGGAGGAGAAGGCCGCGAAGAAGGCGGCGNAGGCC C GGNGCGGC GGGACCTCCACGGAC AACAAGAATAAGGCCGGC GCGCAAAGAAGTAACCGGCACCGGCGACACGTCTNTACGATTAGTAATGCCTTATAAGNTTTGTACCTCATGCAT ] [+] EMBL AU225447 [ gccGCT GAGCAATCCGCCGTCCGTGTCGTCGTCGTCGGCGTCGGCGAGGTCGTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCGAGGCGAG GC GGGGGGAG CCCGGAATCAGGAAGATGACTCGCGGCAACCAGAGGGACCGCGACCGCGAGCGCGCGCAGGCGCGGAAGCCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCC GCGAGAGGGATAAGAAGGCGCTGGAGGAGAAGGCCGCGAAGAAGGCGGCGCAGGCC GC GG GCGGC GGGACCTCCACGGAC AACAAGAATAAGGCCGGCGGCGCAAAGAAGTAACCGGCACCGGCGACACGTCTG ] [+] EMBL AK121882 [ TCGAGCAATCCGCCGTCCGTGTCGTCGTCGTCGGCGTCGGCGAGGTCGTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCGAGGCGAG GC GGGGGGAG CCCGGAATCAGGAAGATGACTCGCGGCAACCAGAGGGACCGCGACCGCGAGCGCGCGCAGGCGCGGAAGCCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCC GCGAGAGGGATAAGAAGGCGCTGGAGGAGAAGGCCGCGAAGAAGGCGGCGCAGGCC GC GG GCGGC GGGACCTCCACGGAC AACAAGAATAAGGCCGGCGGCGCAAAGAAGTAACCGGCACCGGCGACACGTCTGTACGATTAGTAATGCCTTATAAGCTTTGTACCTCATGCATCTGCGTATCCGTGTGCCTTAACTCTTGTTACTCTGTCTCGTTAGATGCGGTATTTGTTGGGTCATAAATCTGTCTCATTAGATGCGGTATTTGTTGGGTCATAAATCTGTCATCTGTAAGCTTCAAATACTGAATATGATGATAATAATATGC GTGTTCTGGTGGTTTTCT ] [+] EMBL AK071167 [ TCGAGCAATCCGCCGTCCGTGTCGTCGTCGTCGGCGTCGGCGAGGTCGTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCGAGGCGAG GC GGGGGGAG CCCGGAATCAGGAAGATGACTCGCGGCAACCAGAGGGACCGCGACCGCGAGCGCGCGCAGGCGCGGAAGCCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCC GCGAGAGGGATAAGAAGGCGCTGGAGGAGAAGGCCGCGAAGAAGGCGGCGCAGGCC GC GG GCGGC GGGACCTCCACGGAC AACAAGAATAAGGCCGGCGGCGCAAAGAAGTAACCGGCACCGGCGACACGTCTGTACGATTAGTAATGCCTTATAAGCTTTGTACCTCATGCATCTGCGTATCCGTGTGCCTTAACTCTTGTTACTCTGTCTCGTTAGATGCGGTATTTGTTGGGTCATAAATCTGTCTCATTAGATGCGGTATTTGTTGGGTCATAAATCTGTCATCTGTAAGCTTCAAATACTGAATATGATGATAATAATATGC GTGTTCTGGTGG ] [+] EMBL CB681878 [ GCCGTCCGTGTCGTCGTCGTCGGCGTCGGCGAGGTCGTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCGAGGCGAG GC GGGGGGAG CCCGGAATCAGGAAGATGACTCGCGGCAACCAGAGGGACCGCGACCGCGAGCGCGCGCAGGCGCGGAAGCCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCC GCGAGAGGGATAAGAAGGCGCTGGAGGAGAAGGCCGCGAAGAAGGCGGCGCAGGCC GC GG GCGGC GGGACCTCCACGGAC AACAAGAATAAGGCCGGCGGCGCAAAGAAGTAACCGGCACCGGCGACACGTCTGTACGATTAGTAATGCCTTATAAGCTTTGTACCTCATGCATCTGCGTATCCGTGTGCCTTAACTCTTGTTACTCTGTCTCGTTAGATGCGGTATTTGTTGGGTCATAAATCTGTCTCATTAGATGCGGTATTTGTTGGGTCATAAATCTGTCATCTGTAAGCTTCAAATACTGAATATGATGATAATAATATGC GTGT ] [+] EMBL C74296 [ CCGTCCGTGTCGTCGTCGTCGGCGTCGGCGAGGTCGTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCGAGGCGAG GC GGGGGGAG CCCGGAATCAGGAAGATGACTCGCGGCAACCAGAGGGACNGCGACCGCGAGCNCGCGCAGGCGGTAAAGCCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCC GCGAGAGGGATAAGAAGGCGCTGGAGGAGAANGCCGCGAANAAGGC ] [+] EMBL AF074777 [ CGTGTCGTCGTCGTCGGCGTCGGCGAGGTCGTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCGAGGCGAG GC GGGGGGAG CCCGGAATCAGGAANATGACTCGCGGCAACCAGAGGGACCGCGACCGCGAGCGCGCGCAGGCGCGGAAGCCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCC GCGAGAGGGATAAGAAGGCGCTGGAGGAGAAGGCCGCGAANAANGCGGCGCANGCC GC GG GCGGC GGGACCTCCACGGAC AACAAGAATAAGGCCGGCGGCGCAAAGAAGTAACCGGCACCGGCGACACGTCTGTACGATTAGTAATGCCTTATAAGCTTTGTACCTCATGCATCTGCGGATCCGTGTGCCTTAACTCTTGTTACTCTGTCTCGTTAGATGCGGTATTTGTTGGGTCNTAAATCTGTCTCATTAGATGCGGTATTTGTTGGGTCATAAATCTGTCATCTGTAAGCTTCAAATACTGAATATGATGATAATAATATGC GTGT ] [+] EMBL BI795543 [ GAGTCGAGTTCGGGGGGGAGCCCCGGAATCAGGAAGATGACTC CGGAAACCAGAGGGACCTCGACC CGAGCGCGC CAGGCGCGGAAGCCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCCAGCGAGAGGGATAAGAAGGCGCTGGAGGAGAA GCCGCGAAGAAGGCGGCGCAGGCCAGCAGG GCGGCAGGGACCTCCACGGACAAACAAGAATAAGGCCGGCGGCGCAAAGAAGTAACCGGCACCGGCGACACGTCTGTACGATTAGTAATGCCTTATAAGCTTTGTACCTCATGCATCTGCGGATCCGTGTGCCTTAACTCTTGTTACTCTGTCTCGTTAGATGCGGTATTTGTTGGGTCATAAATCTGTCTCATTAGAT CGGTATTTGTTGGGTCATAAATCTGTCATCTGTAAGCTTCAAATACTGAATATGATGATAATAATATGC GTGTTCTGGTGGTTTTCTGGGT TGTCGCCAAAAAAAAAA ] [+] EMBL AU077738 [ CCGTGAGCGC CTCAGGCNCGGAAGCCCAACGCCAAGGNCCCCCAGGACGGGNTCACCCCGGAGNAGCGCC GCGAGAGGGNTAAGAAGGCGCTGGAGGAGAAGGCCGCGAAGAAGGCGGCGCAGGCC NC GG GCGGC GGGACCTCCACGGAC AACAAGAATAAGGCCGGCGGCGCAAAGAAGTAACCGGCACCGGCGACACGTCTGTACGATTAGTAATGCCTTATAAGCTTTGTACCTCATGCATCTGCGTATCCGTGTGCCTTAACTCTTGTTACTCTGTCTCGTTAGATGCGGTATTTGTTGGGTCATAAATCTGTCTCATTAGATGCGGTATTTGTTGGGTCATAAATCTGTCATCTGTAAGCTTCAAATACTGAATATGATGATAATAATATGC GTGTTCTGGTGGTTTTNTGGGTTGTCGCAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU182760 [ AGGCGCGGAAGCCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCC GCGAGAGGGATAAGAAGGCGCTGGAGGAGAAGGCCGCGAAGAAGGCGGCGCAGGCC GC GG GCGGC GGGACCTCCACGGAC AACAAGAATAAGGCCGGCGGCGCAAANAAGTAACCGGCACCGGCGACACGTCTGTACGATTAGTAATGCCTTATAAGCTTTGTACCTCATGCATCTGCGTATCCGTGTGCCTTAACTCTTGTTACTCTGTCTCGTTAGATGCGGTATTTGTTGGGTCATAAATCNGTCTCATTAGATGCGGTATTTGTTGGGTCATAAATCTGTCATCTGTAAGCTTCAAATACTGAATATGATGATAATAATATGCGGTGTTCTGGTGGTTTTCTGGGT AAAAAAAAAAAA ] consensusID : consensus_13800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [CGCCGTCCGTGTCGTCGTCGTCAGCCGTCGGCGAGGTCGTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCCAGGCGAGGCGGGGGGAGCCCGGAATCAGGAAGATGACTCGCGGAAACCAGAGGGACCGCGACCGCGAGCGCTCGCAGGCTCGGAAGCCCATCGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCCTCGAGAGGGATCAATATGGCGCTGGATGAGACCGCCTCGATGACGGCGGCGCAGGCCGCGGGCGGCGGGACCTCCACGAGACACTCAAGAATCAAGGCCGGCGGCGCTAGGGATGTATCCCGTGCACCGGCGAACCCGTCTGGTAACGATGCAGTCAATTGCTCTTATCACGCTTTTGTCACCTGCATAGCATCCTTAGCGGATCCCGTGGTCGGCCTTCAACCTGCTTCGTCAACCTACTAGTCACAACATCAAAAAATAGCGGCGTCATTAGCTGTTTCGAGGTACCGTTAAACATGCTAGTGC] [+] EMBL CA753659 [CGCCGTCCGTGTCGTCGTCGTCAGCCGTCGGCGAGGTCGTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCCAGGCGAGGCGGGGGGAGCCCGGAATCAGGAAGATGACTCGCGGAAACCAGAGGGACCGCGACCGCGAGCGCTCGCAGGCTCGGAAGCCCATCGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCCTCGAGAGGGATCAATATGGCGCTGGATGAGACCGCCTCGATGACGGCGGCGCAGGCCGCGGGCGGCGGGACCTCCACGAGACACTCAAGAATCAAGGCCGGCGGCGCTAGGGATGTATCCCGTGCACCGGCGAACCCGTCTGGTAACGATGCAGTCAATTGCTCTTATCACGCTTTTGTCACCTGCATAGCATCCTTAGCGGATCCCGTGGTCGGCCTTCAACCTGCTTCGTCAACCTACTAGTCACAACATCAAAAAATAGCGGCGTCATTAGCTGTTTCGAGGTACCGTTAAACATGCTAGTGC] consensusID : consensus_13800#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [GAGGTCGTCNTCTCCNNCAGGAGGTGGGGGCGCCAGGTCGANGCGANTGGGGGGAGCCCGGAATCAGGAAGATGATCGCGGAAACCAGAGGRACCGCGACCGCGAGCNCGCGCAGGNGGAACAGACCCAACGCCAAGGCCCCCAGGANGGNNTCACCCCGGAGNAGCGCCGCGAGAGGGANAAGAAGCCGCTGGCAGGAGAAGACCGCGAAGA] [+] EMBL OS38019 [GAGGTCGTCNTCTCCNNCAGGAGGTGGGGGCGCCAGGTCGANGCGANTGGGGGGAGCCCGGAATCAGGAAGATGATCGCGGAAACCAGAGGRACCGCGACCGCGAGCNCGCGCAGGNGGAACAGACCCAACGCCAAGGCCCCCAGGANGGNNTCACCCCGGAGNAGCGCCGCGAGAGGGANAAGAAGCCGCTGGCAGGAGAAGACCGCGAAGA] consensusID : consensus_13800#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence [TCGTCGTCTCCGGCAGGGGTGGGGGAGCCAGGTCGAGGCGAGGCGGGGGGAGCCCGGAATCAGGAAGATGACTCGCGGCAACCAGAGGGACCGGACCGGAGCCCCCAGGGAAGCCCAACGCCAAGGGGCCACG] [+] EMBL AA749926 [TCGTCGTCTCCGGCAGGGGTGGGGGAGCCAGGTCGAGGCGAGGCGGGGGGAGCCCGGAATCAGGAAGATGACTCGCGGCAACCAGAGGGACCGGACCGGAGCCCCCAGGGAAGCCCAACGCCAAGGGGCCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13800#1 ----------------------CGCCGTCCGTGTCGTCGTCGTCAGCCGTCGGCGAGGTC 38 consensus_13800#3 ----------------------------------------------------------TC 2 consensus_13800#0 TCCTGGGGGAGCTCGAGCAATCCGCCGTCCGTGTCGTCGTCGTCGGC-GTCGGCGAGGTC 59 consensus_13800#2 ------------------------------------------------------GAGGTC 6 ** consensus_13800#1 GTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCCAGGCGAGGCGGGGGGAGCCCGGAATC 98 consensus_13800#3 GTCGTCTCCGGCAGGGG-TGGGGGAGCCAGGTCGAGGCGAGGCGGGGGGAGCCCGGAATC 61 consensus_13800#0 GTCGTCTCCGGCAGGGGGTGGGGGAGCCAGGTCGAGGCGAGGCGGGGGGAGCCCGGAATC 119 consensus_13800#2 GTCNTCTCCNNCAGGAGGTGGGGGCGCCAGGTCGANGCGAN-TGGGGGGAGCCCGGAATC 65 *** ***** **** * ****** ******** * **** ***************** consensus_13800#1 AGGAAGATGACTCGCGGAAACCAGAGGGACCGCGACCGCGAGCGCTCGCAGGCTCGGAAG 158 consensus_13800#3 AGGAAGATGACTCGCGGCAACCAGAGGGACCG-GACCG---GAGCCCCCAGG----GAAG 113 consensus_13800#0 AGGAAGATGACTCGCGGCAACCAGAGGGACCGCGACCGCGAGCGCGCGCAGGCGCGGAAG 179 consensus_13800#2 AGGAAGATGA-TCGCGGAAACCAGAGGRACCGCGACCGCGAGCNCGCGCAGGNGGAACAG 124 ********** ****** ********* **** ***** * * * **** ** consensus_13800#1 -CCCATCGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCCTCGAGAGGGATCA 217 consensus_13800#3 -CCCAACGCCAAGGGGCCACG--------------------------------------- 133 consensus_13800#0 -CCCAACGCCAAGGGCCCCCAGGACGGGCTCACCCCGGAGCAGCGCCGCGAGAGGGAT-A 237 consensus_13800#2 ACCCAACGCCAAGG-CCCCCAGGANGGNNTCACCCCGGAGNAGCGCCGCGAGAGGGAN-A 182 **** ******** ** * consensus_13800#1 ATATGGCGCTGG-ATGAGACCGCCTCGATGACGGCGGCGCAGGCCGCGGGCGGCGGGACC 276 consensus_13800#3 ------------------------------------------------------------ consensus_13800#0 AGAAGGCGCTGG-AGGAGAAGGCCGCGAAGAAGGCGGCGCAGGCCGCGGGCGGCGGGACC 296 consensus_13800#2 AGAAGCCGCTGGCAGGAGAAGACCGCGAAGA----------------------------- 213 consensus_13800#1 TCCACGAGACACTCAAGAATCAAGGCCGGCGGCGCTAGGGATGTATCCCGTGCACCGGCG 336 consensus_13800#3 ------------------------------------------------------------ consensus_13800#0 TCCACGGACAAC---AAGAATAAGGCCGGCGGCGCAAAGAAGTAACC---GGCACCGGCG 350 consensus_13800#2 ------------------------------------------------------------ consensus_13800#1 AACCCGTCTGGTAACGATGCAGTCAATTGCTCTTATCACGCTTTTGTCACCTGCATAGCA 396 consensus_13800#3 ------------------------------------------------------------ consensus_13800#0 A-CACGTCTGTACGATTAGTAATGCCTTATAAGCTTTGTACCTCATGCATCTGCGTATCC 409 consensus_13800#2 ------------------------------------------------------------ consensus_13800#1 TCCTTAGCGGATCCCGTGGTCGGCCTTCAACCTGCTTCGTCAACCTACTAGTCACAACAT 456 consensus_13800#3 ------------------------------------------------------------ consensus_13800#0 GTGTGCCTTAACTCTTGTTACTCTGTCTCGTTAGATGCGGTATTTGTTGGGTCATAAATC 469 consensus_13800#2 ------------------------------------------------------------ consensus_13800#1 CAAAAAAT-AGCGGCGTCATTAGCTGTTTCGAGGTACCGTTAAACATGCTAGTGC----- 510 consensus_13800#3 ------------------------------------------------------------ consensus_13800#0 TGTCTCATTAGATGCGGTATTTGTTGGGTCATAAATCTGTCATCTGTAAGCTTCAAATAC 529 consensus_13800#2 ------------------------------------------------------------ consensus_13800#1 ------------------------------------------------------------ consensus_13800#3 ------------------------------------------------------------ consensus_13800#0 TGAATATGATGATAATAATATGCGTGTTCTGGTGGTTTTCTGGGTAAAAAAAAAAAAAAA 589 consensus_13800#2 ------------------------------------------------------------ consensus_13800#1 ----- consensus_13800#3 ----- consensus_13800#0 AAAAA 594 consensus_13800#2 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||