cluster # 13804

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13804 cluster # 13804 Sequences # 14 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13804#0 length = 1352 sequences # 8
consensus_13804#1 length = 692 sequences # 4

consensus_13804#2 length = 498 sequences # 1
consensus_13804#3 length = 455 sequences # 1

consensusID : consensus_13804#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1352
fasta sequence

                              [TGGACTGAAGGAGTAGAAACCCCAATAGGCAACTGCACGCGCCGCCGCAGCCTCTCTCTCTCTCTCCGCCGCTCCGGCTTTCTCCTCCTCTTGCTGCTCCGATTGCTCCATGGCGGGCGGCGACAGCGCGGCGGTGTCGGCGGTGGAGGGGAGGCTGTCGGAGCTCTCCACCAACAGCGACGAGAAGGGGCTCCCCAGGAGGGGCA-AGTCTTTATCAGGAAGGACA-TTAAACACCGCACAGATTCAACTCGTTGCA-AGCCATCCAGAGGTGTATGAACCATGTGATGATTCCTTTGCACTTGTCGATGCGCTTCTTTCTGACAAAGCACAACTTTTGACGCTAAAGCCAAGATTATGCATGGAGATAGGATGTGGCAGTGGCTATGTTATCACATCTCTAGCAATCATGCTCAGGCAGTTAGGCTCAGGAACCCAGTACCTCGCTACTGATATCAATCAACATGCTGTGGAGACAACTCAAGCAACCCTTGAAGCCCATGGCGTCCATGCAGACGTGATTGCTACTGATATTGTGTCAGGTCTTGAGAAACGCCTGCATGGTTTGGTTGACGTTGTTGTTGTGAACCCTCCTTATGTACCAACACCTGAGGAAGAAATCGAGTCCAATGGCATCGCTTCATCTTGGGCTGGA-GGTATAAACGGGCGCCAAGTGATTGATCGGATCCTTCCTGCTGTGCGTGAGCTGCTATCTGAAAGAGGGTGGCTGTATATGATTGCTCTTGAAGATAACGATCCTCTGGATATCTGTCATTTGATGAATGAGAAGGGCTATGCATCACGCGTTCTCTTGAAGAGATGCACTGAAGAAGAAAGCCTTTATGTTCTAAAGTTTTGGCAGGACGCTTCCACTGGCACAAACGCTTCTCATGCCGCTAGATCACCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCAAAAGATAGCAACAAGTACTTTGCAACCTTCAGATGGCAGAAGTATCTGTAAACATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCAAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCAATTAGCAATAAAGTTCCAACCCTTTTATTTTGGGTGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGTAATATGGGTCCTGTTATTATCGAATGGATTAGTAAACCATATCA----AAA--AAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATCGTTA]

[+] EMBL CF281015             [TGGACTGAAGGAGTAGAAACCCCAATAGGCAACTGCACGCGCCGCCGCAGCCTCTCTCTCTCTCTCCGCCGCTCCGGCTTTCTCCTCCTCTTGCTGCTCCGATTGCTCCATGGCGGGCGGCGACAGCGCGGCGGTGTCGGCGGTGGAGGGGAGGCTGTCGGAGCTCTCCACCAACAGCGACGAGAAGGGGCTCCCCAGGAGGGGCA AGTCTTTATCAGGAAGGACA TTAAACACCGCACAGATTCAACTCGTTGCA AGCCATCCAGAGGTGTATGAACCATGTGATGATTCCTTTGCACTTGTCGATGCGCTTCTTTCTGACAAAGCACAACTTTTGACGCTAAAGCCAAGATTATGCATGGAGATAGGATGTGGCAGTGGCTATGTTATCACATCTCTAGCAATCATGCTCAGGCAGTTAGGCTCAGGAACCCAGTACCTCGCTACTGATATCAATCAACATGCTGTGGAGACAACTCAAGCAACCCTCGAAGCCCATGGCGTCCATGCAGACGTGATTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK059711             [                                           GCCGCAGCCTCTCTCTCTCTCTCCGCCGCTCCGGCTTTCTCCTCCTCTTGCTGCTCCGATTGCTCCATGGCGGGCGGCGACAGCGCGGCGGTGTCGGCGGTGGAGGGGAGGCTGTCGGAGCTCTCCACCAACAGCGACGAGAAGGGGCTCCCCAGGAGGGGCA AGTCTTTATCAGGAAGGACA TTAAACACCGCACAGATTCAACTCGTTGCA AGCCATCCAGAGGTGTATGAACCATGTGATGATTCCTTTGCACTTGTCGATGCGCTTCTTTCTGACAAAGCACAACTTTTGACGCTAAAGCCAAGATTATGCATGGAGATAGGATGTGGCAGTGGCTATGTTATCACATCTCTAGCAATCATGCTCAGGCAGTTAGGCTCAGGAACCCAGTACCTCGCTACTGATATCAATCAACATGCTGTGGAGACAACTCAAGCGACCCTTGAAGCCCATGGCGTCCATGCAGACGTGATTGCTACTGATATTGTGTCAGGTCTTGAGAAACGCCTGCATGGTTTGGTTGACGTTGTTGTTGTGAACCCTCCTTATGTACCAACACCTGAGGAAGAAATCGAGTCCAATGGCATCGCTTCATCTTGGGCTGGA GGTATAAACGGGCGCCAAGTGATTGATCGGATCCTTCCTGCTGTGCGTGAGCTGCTATCTGAAAGAGGGTGGCTGTATATGATTGCTCTTGAAGATAACGATCCTCTGGATATCTGTCATTTGATGAATGAGAAGGGCTATGCATCACGCGTTCTCTTGAAGAGATGCACTGAAGAAGAAAGCCTTTATGTTCTAAAGTTTTGGCAGGACGCTTCCACTGGCACAAACGCTTCTCATGCCGCTAGATCACCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCAAAAGATAGCAACAAGTACTTTGCAACCTTCAGATGGCAGAAGTATCTGTAAACATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCAAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCAATTAGCAATAAAGTTCCAACCCTTTTATTTTGGGTGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTCACTGCACTTGTAATATGGGTCCTGTTATTATCGAATGGATTAGTAAAC                                                                ]
[+] EMBL CF298447             [                                               CAGCCTCTCTCTCTCTCTCCGCCGCTCCGGCTTTCTCCTCCTCTTGCTGCTCCGATTGCTCCATGGCGGGCGGCGACAGCGCGGCGGTGTCGGCGGTGGAGGGGAGGCTGTCGGAGCTCTCCACCAACAGCGACGAGAAGGGGCTCCCCAGGAGGGGCA AGTCTTTATCAGGAAGGACA TTAAACACCGCACAGATTCAACTCGTTGCA AGCCATCCAGAGGTGTATGAACCATGTGATGATTCCTTTGCACTTGTCGATGCGCTTCTTTCTGACAAAGCACAACTTTTGACGCTAAAGCCAAGATTATGCATGGAGATAGGATGTGGCAGTGGCTATGTTATCACATCTCTAGCAATCATGCTCAGGCAGTTAGGCTCAGGAACCCAGTACCTCGCTACTGATATCAATCAACATGCTGTGGAGACAACTCAAGCAACCCTTGAAGCCCATGGCGTCCATGCAGACGTGATTGCTACTGATATTGTGTCAGGTCTTGAGAAACGCCTGCATGGTTTGGTTGACGTTGTTGTTGTGAACCCTCCTTATGTACCAACACCTGAGGAAGAAATCGAGTCCAATGGCATCGCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB659157             [                                                        TCTCTCTCTCCGCCGCTCCGGCTTTCTCCTCCTCTTGCTGCTCCGATTGCTCCATGGCGGGCGGCGACAGCGCGGCGGTGTCGGCGGTGGAGGGGAGGCTGTCGGAGCTCTCCACCAACAGCGACGAGAAGGGGCTCCCCAGGAGGGGCA AGTCTTTATCAGGAAGGACA TTAAACACCGCACAGATTCAACTCGTTGCA AGCCATCCAGAGGTGTATGAACCATGTGATGATTCCTTTGCACTTGTCGATGCGCTTCTTTCTGACAAAGCACAACTTTTGACGCTAAAGCCAAGATTATGCATGGAGATAGGATGTGGCAGTGGCTATGTTATCACATCTCTAGCAATCATGCTCAGGCAGTTAGGCTCAGGAACCCAGTACCTCGCTACTGATATCAATCAACATGCTGTGGAGACAACTCAAGCAACCCTTGAAGCCCATGGCGTCCATGCAGACGTGATTGCTACTGATATTGTGTCAGGTCTTGAGAAACGCCTGCATGGTTTGGTTGACGTTGTTGTTGTGAACCCTCCTTATGTACCAACACCTGATGAAGAAATCGAGTCCAATGGCATCGCTTCATCTTGGGCTGGA GGTATAAACGGGCGCCCAGTGATTGATCGGATCCTTCCTGCTGTGCGTGAGCTGCTATCTGAAAGAGGGTGGCTGTATATGATTGCTCTTGAACATAACGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF323614             [                                                                                                                                                         GCTGTCGGAGCTCTCCACCAACAGCGACGAGAAGGGGCTCCCCAGGAGGGGCA AGTCTTTATCAGGAAGGACA TTAAACACCGCACAGATTCAACTCGTTGCA AGCCATCCAGAGGTGTATGAACCATGTGATGATTCCTTTGCACTTGTCGATGCGCTTCTTTCTGACAAAGCACAACTTTTGACGCTAAAGCCAAGATTATGCATGGAGATAGGATGTGGCAGTGGCTATGTTATCACATCTCTAGCAATCATGCTCAGGCAGTTAGGCTCAGGAACCCAGTACCTCGCTACTGATATCAATCAACATGCTGTGGAGACAACTCAAGCAACCCTTGAAGCCCATGGCGTCCATGCAGACGTGATTGCTACTGATATTGTGTCAGGTCTTGAGAAACGCCTGCATGGTTTGGTTGACGTTGTTGTTGTGAACCCTCCTTATGTACCAACACCTGAGGAAGAAATCGAGTCCAATGGCATCGCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C72580               [                                                                                                                                                                                                      GAGGGGCAGAGTCTTTATCAGGAAGGACAGTTAAACAGCGCACAGATTCAACTCGTTGCAGAGCCATCCAGAGGTGTATGAACCATGTGATGATTCCTTTGCACTTGTCGATGCGCTTCTTTCTGACAGAGCACAGCTTTTGACGCTAAAGCCAAGATTATGCATGGAGATAGGATGTGGCAGTGGCTATGTTATCACATCTCTAGCAATCATGCTCAGGCAGTTAGGCTCAGGAACCCAGTACCTCGCTACTGATATCAATCAACATGCTGTGGAGACANCTCAAGCAACCCTTGAAGCCCATGGCGTCCATGCAGACGTGATTGCTACTGATATTGTGTCAGGTCTTGAGAAACGCCTGCATGGTTTNGTTGACGTTGTTGTTGTGACCCCTCCTTATGTACCca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CA762235             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCTT ATCCTGGGC GGAGGGTATAAACGGGCGCCAAGTGATTGATCCGATCCTTCCTGCTGTGCGTGAAGTGCTATCTGAAAGAGGGTGGCTGTATATGATTGCTCTTGAAGATAACGATCCTCCGGATATCTGTCATNTGATGAATGAGAAGGGCTATGCATCACGCGTTCTCTTGAAGAGATGCACTGAAGAAGAAAGCCTTTATGTTCTAAAGTTTTGGCAGGACGCTTCCACTGGCACAAACGCTTTTCATGCCGCTAGATCACCACGCTCTGAATCCTCATGGCTTTTTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCAAAAGATAGCAACAAGTTCTTTGCAACCTTCAGATGGCAGCAGTATCTGTAAACATGTTTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCAAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCAATTAGCAATAAAGTTCCAACCCTTTTATTTTGGGTGTTTTTCTATTTTGGTGGGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGTAATATAGGTCCTGTTATTATCGAATGGATTAGTAAACCATATCA    AAA  AAAAAAAAAAAAAAAAA                               ]
[-] EMBL CF281016             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTGGCACAAACGCTTCTCATGCCGCTAGATCACCACGCTCTGAATCCTCACGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCAAAAGATAGCAACAAGTACTTTGCAACCTTCAGATGGCAGAAGTATCTGTAAACATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCAAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCAATTAGCAATAAAATTCCAACCCTTTTATTTTGGGTGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGTAATATGGGTCCTGTTATTATCGAATGGATTAGTAAACCATATCAGCGGAAAGTAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATCGTTA]




>consensus_13804#0
TGGACTGAAGGAGTAGAAACCCCAATAGGCAACTGCACGCGCCGCCGCAGCCTCTCTCTC
TCTCTCCGCCGCTCCGGCTTTCTCCTCCTCTTGCTGCTCCGATTGCTCCATGGCGGGCGG
CGACAGCGCGGCGGTGTCGGCGGTGGAGGGGAGGCTGTCGGAGCTCTCCACCAACAGCGA
CGAGAAGGGGCTCCCCAGGAGGGGCAAGTCTTTATCAGGAAGGACATTAAACACCGCACA
GATTCAACTCGTTGCAAGCCATCCAGAGGTGTATGAACCATGTGATGATTCCTTTGCACT
TGTCGATGCGCTTCTTTCTGACAAAGCACAACTTTTGACGCTAAAGCCAAGATTATGCAT
GGAGATAGGATGTGGCAGTGGCTATGTTATCACATCTCTAGCAATCATGCTCAGGCAGTT
AGGCTCAGGAACCCAGTACCTCGCTACTGATATCAATCAACATGCTGTGGAGACAACTCA
AGCAACCCTTGAAGCCCATGGCGTCCATGCAGACGTGATTGCTACTGATATTGTGTCAGG
TCTTGAGAAACGCCTGCATGGTTTGGTTGACGTTGTTGTTGTGAACCCTCCTTATGTACC
AACACCTGAGGAAGAAATCGAGTCCAATGGCATCGCTTCATCTTGGGCTGGAGGTATAAA
CGGGCGCCAAGTGATTGATCGGATCCTTCCTGCTGTGCGTGAGCTGCTATCTGAAAGAGG
GTGGCTGTATATGATTGCTCTTGAAGATAACGATCCTCTGGATATCTGTCATTTGATGAA
TGAGAAGGGCTATGCATCACGCGTTCTCTTGAAGAGATGCACTGAAGAAGAAAGCCTTTA
TGTTCTAAAGTTTTGGCAGGACGCTTCCACTGGCACAAACGCTTCTCATGCCGCTAGATC
ACCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAA
TGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCAAAAGATAGCAACAAGTAC
TTTGCAACCTTCAGATGGCAGAAGTATCTGTAAACATGTCTGAAATGAGATGCTGCTGTT
GGTCTCTGACTCCCTTCAAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTT
AGCTATGAATGGTCCTATGAGCAATTAGCAATAAAGTTCCAACCCTTTTATTTTGGGTGT
TCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGTAAT
ATGGGTCCTGTTATTATCGAATGGATTAGTAAACCATATCAAAAAAAAAAAAAAAAAAAA
AAAATGTCATGCCGTTACGTAGCGTATCGTTA

consensusID : consensus_13804#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 692
fasta sequence

                              [TCCTTCCTGCTGTGCGTAAGATGCTATCTGAAGAGGGTGGGCTGTATATGATGCCTCTTGAAGATAACGATCCTCGGGATATCTGTCATTTGATGAATGAGAAGGGCTATGCATCACGCGT-TCTC-TTGAAGAGATGCACTGAAGAAGAAAGCCTTTATGTTCTAAAGTTTTGGCAGGACGCTTCC-ACTGGCACAAACGCTTCTCATGCCGCTAGATCACCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTT-CC-AAAGATAGCAACA-AGTTCTTTGCAACCTTCAGATGGCAGCAGTATCTGTAAA-CATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCA-AAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCAATTA-GCAATAAAGTTCCAACCCTTTTATTTTGGGTGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGTAATATGGGTCCTGTTATTATCGAATGGATTAGTAAACCATATCAGCGAAAAGAATGTACGAGCAAGTTTCTGGAACTATAACTACATCAAAGTAGTTACTACAAGAAAAAGAAAAAAAA]

[-] EMBL CA760395             [TCCTTCCTGCTGTGCGTAAGATGCTATCTGAAGAGGGTGGGCTGTATATGATGCCTCTTGAAGATAACGATCCTCGGGATATCTGTCATTTGATGAATGAGAAGGGCTATGCATCACGCGT TCTC TTGAAGAGATGCACTGAAGAAGAAAGCCTTTATGTTCTAAAGTTTTGGCAGGACGCTTCC ACTGGCACAAACGCTTCTCATGCCGCTAGATCACCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTT CCAAAAGGTAGCAACA AGTTCTTTGCAACCTTCAGATGGCAGCAGTATCTGTAAA CATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCA AAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCAATTA GCAATAAAGTTCCAACCCTTTTATTTTGGGTGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGTAATATGGGTCCTGTTATTATCGAATGGATTAGTAAACCATATCAGCGAAAAGAATGTACGAGCAAGTTTCTGGAACTATAACTACATCAAAGTAGTTACTACAAGAAAAAGAAAAAAAA]
[+] EMBL BI813455             [                                                                                                           TATGCATCACGCGTGTCTCTTTGAAGAGAT CCCTGAAGAAGNAAGCCTTTATGTTCTAAAGTTTTGGCAGGACGCTTCCAACTGGCACCAACGCTTCTCATGCCGCTAGATCACCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTT CC AAAGATAGC ACA AGTTCTTTGCAACCTTCAGATGGCAGCGGTATCTGTAAA CATGTCTGAAATGAGAT CTGCTGTTGGTCTCTGACTCCCTTCA AAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGC ATTA GCAATAAAGTTCCAACCCTTTTATTTTGGGTGTTCTTCTAaaaa                                                                                                                                                                     ]
[+] EMBL BI804295             [                                                                                                                                                         CCTTTATGTTCTAAAGTTTT GCAGGACGCTTCC ACTGGCACAAACGCTTCTCATGCCGCTAGATCACCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTT CC AAAGATAGCAACA AGTTCTTTGCAACCTTCAGATGGCAGCAGTATCTGTAAA CATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCA AAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCAATTA GCAATAAAGTTCCAACCCTTTTATTTTGGGTGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGTAATATGGGTCCTGTTATTATCGAATGGATTAGTAAACCATATCAGCGAAAAGAATGTACGAGCAAGTTTCTGGAACTATAACTACATCAAAGTAGTTACTACAAGAAAAAAAAAA    ]
[+] EMBL BI802675             [                                                                                                                                                                                                                                                                                                                         CCAGTTCCC AAAGATAGCAACACAGTTCTTTGCAACCTTCAGATGGCAGCAGTATCTGTAAACCATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCACAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGC ATTACGCAATAAAGTTCCAACCCTTTTATTTTGGGTGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGTAATATGGGTCCTGTTATTATCGAATGGATTAGTAAACCATATCAGCGAAAAGAATGTACGA CAAGTTTCTGGAACTATAAaaaaaaaa                              ]




>consensus_13804#1
TCCTTCCTGCTGTGCGTAAGATGCTATCTGAAGAGGGTGGGCTGTATATGATGCCTCTTG
AAGATAACGATCCTCGGGATATCTGTCATTTGATGAATGAGAAGGGCTATGCATCACGCG
TTCTCTTGAAGAGATGCACTGAAGAAGAAAGCCTTTATGTTCTAAAGTTTTGGCAGGACG
CTTCCACTGGCACAAACGCTTCTCATGCCGCTAGATCACCACGCTCTGAATCCTCATGGC
TTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGT
CGATTTATCTCCAGTTCCAAAGATAGCAACAAGTTCTTTGCAACCTTCAGATGGCAGCAG
TATCTGTAAACATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCAAAAGAG
TAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCAA
TTAGCAATAAAGTTCCAACCCTTTTATTTTGGGTGTTCTTCTATTTTGGTGTGTATATGT
GCTAGTCTGGATTCCTTATCTTACTGCACTTGTAATATGGGTCCTGTTATTATCGAATGG
ATTAGTAAACCATATCAGCGAAAAGAATGTACGAGCAAGTTTCTGGAACTATAACTACAT
CAAAGTAGTTACTACAAGAAAAAGAAAAAAAA

consensusID : consensus_13804#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [GATCACCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCAAAAGATAGCAACAAGTACTTTGCAACCTTCAGATGGCAGAAGTATCTGTAAACATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCAAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCAATTAGCAATAAAGTTCCAACCCTTTTATTTTGGGTGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGTAATATGGGTCCTGTTAATAAAAAAAAAATTAGTAAACCATATCAGCGAAAAGAATGTACGAGCAAGTTTCTGGAACTATAACTACATCAAAGTAGTTACTACAAGAATATCATGATGTCTGATGTGTCTGTTGAATC]

[-] EMBL CF298448             [GATCACCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCAAAAGATAGCAACAAGTACTTTGCAACCTTCAGATGGCAGAAGTATCTGTAAACATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCAAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCAATTAGCAATAAAGTTCCAACCCTTTTATTTTGGGTGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGTAATATGGGTCCTGTTAATAAAAAAAAAATTAGTAAACCATATCAGCGAAAAGAATGTACGAGCAAGTTTCTGGAACTATAACTACATCAAAGTAGTTACTACAAGAATATCATGATGTCTGATGTGTCTGTTGAATC]




>consensus_13804#2
GATCACCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATA
AGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCAAAAGATAGCAACAA
GTACTTTGCAACCTTCAGATGGCAGAAGTATCTGTAAACATGTCTGAAATGAGATGCTGC
TGTTGGTCTCTGACTCCCTTCAAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGG
ACTTAGCTATGAATGGTCCTATGAGCAATTAGCAATAAAGTTCCAACCCTTTTATTTTGG
GTGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTG
TAATATGGGTCCTGTTAATAAAAAAAAAATTAGTAAACCATATCAGCGAAAAGAATGTAC
GAGCAAGTTTCTGGAACTATAACTACATCAAAGTAGTTACTACAAGAATATCATGATGTC
TGATGTGTCTGTTGAATC

consensusID : consensus_13804#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [CTGTCATTTGATGAATGAGAAGGGCTATGCATCACGCGTTCTCTTGAAGAGATCACCTGAAGAAGAAAGCCTTTATGTTCTAAAGTTTTGGCACGGACGCTTCCACCTGGCACCAACGCTTCTCATGCCGCTAGATCACCCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCCAAAGATAGCAACAAGTTCTTTGCAACCTTCAGATGGCAGCAGTATCTGTAAACATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCATTAGCATAAAGTTCCACCCTTTTATTTTGGGTGTTCTTCTAAAAAAAAAAAAAAA]

[+] EMBL BM038640             [CTGTCATTTGATGAATGAGAAGGGCTATGCATCACGCGTTCTCTTGAAGAGATCACCTGAAGAAGAAAGCCTTTATGTTCTAAAGTTTTGGCACGGACGCTTCCACCTGGCACCAACGCTTCTCATGCCGCTAGATCACCCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCCAAAGATAGCAACAAGTTCTTTGCAACCTTCAGATGGCAGCAGTATCTGTAAACATGTCTGAAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCATTAGCATAAAGTTCCACCCTTTTATTTTGGGTGTTCTTCTAAAAAAAAAAAAAAA]




>consensus_13804#3
CTGTCATTTGATGAATGAGAAGGGCTATGCATCACGCGTTCTCTTGAAGAGATCACCTGA
AGAAGAAAGCCTTTATGTTCTAAAGTTTTGGCACGGACGCTTCCACCTGGCACCAACGCT
TCTCATGCCGCTAGATCACCCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAG
ATCCCTTTGGCATAAGAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCC
AAAGATAGCAACAAGTTCTTTGCAACCTTCAGATGGCAGCAGTATCTGTAAACATGTCTG
AAATGAGATGCTGCTGTTGGTCTCTGACTCCCTTCAAAGAGTAAAAGAATCAGAAATCAG
ACTGACTTGGTGGACTTAGCTATGAATGGTCCTATGAGCATTAGCATAAAGTTCCACCCT
TTTATTTTGGGTGTTCTTCTAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13804#0      TGGACTGAAGGAGTAGAAACCCCAATAGGCAACTGCACGCGCCGCCGCAGCCTCTCTCTC 60
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      ------------------------------------------------------------
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      TCTCTCCGCCGCTCCGGCTTTCTCCTCCTCTTGCTGCTCCGATTGCTCCATGGCGGGCGG 120
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      ------------------------------------------------------------
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      CGACAGCGCGGCGGTGTCGGCGGTGGAGGGGAGGCTGTCGGAGCTCTCCACCAACAGCGA 180
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      ------------------------------------------------------------
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      CGAGAAGGGGCTCCCCAGGAGGGGCAAGTCTTTATCAGGAAGGACATTAAACACCGCACA 240
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      ------------------------------------------------------------
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      GATTCAACTCGTTGCAAGCCATCCAGAGGTGTATGAACCATGTGATGATTCCTTTGCACT 300
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      ------------------------------------------------------------
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      TGTCGATGCGCTTCTTTCTGACAAAGCACAACTTTTGACGCTAAAGCCAAGATTATGCAT 360
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      ------------------------------------------------------------
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      GGAGATAGGATGTGGCAGTGGCTATGTTATCACATCTCTAGCAATCATGCTCAGGCAGTT 420
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      ------------------------------------------------------------
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      AGGCTCAGGAACCCAGTACCTCGCTACTGATATCAATCAACATGCTGTGGAGACAACTCA 480
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      ------------------------------------------------------------
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      AGCAACCCTTGAAGCCCATGGCGTCCATGCAGACGTGATTGCTACTGATATTGTGTCAGG 540
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      ------------------------------------------------------------
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      TCTTGAGAAACGCCTGCATGGTTTGGTTGACGTTGTTGTTGTGAACCCTCCTTATGTACC 600
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      ------------------------------------------------------------
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      AACACCTGAGGAAGAAATCGAGTCCAATGGCATCGCTTCATCTTGGGCTGGAGGTATAAA 660
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      ------------------------------------------------------------
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      CGGGCGCCAAGTGATTGATCGGATCCTTCCTGCTGTGCGTGAGCTGCTATCTGAAAGAGG 720
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      -----------------------TCCTTCCTGCTGTGCGTAAGATGCTATCTGAAGAGGG 37
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      GTGGCTGTATATGATTGCTCTTGAAGATAACGATCCTCTGGATATCTGTCATTTGATGAA 780
consensus_13804#3      ---------------------------------------------CTGTCATTTGATGAA 15
consensus_13804#1      TGGGCTGTATATGATGCCTCTTGAAGATAACGATCCTCGGGATATCTGTCATTTGATGAA 97
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      TGAGAAGGGCTATGCATCACGCGTTCTCTTGAAGAGATGCACTGAAGAAGAAAGCCTTTA 840
consensus_13804#3      TGAGAAGGGCTATGCATCACGCGTTCTCTTGAAGAGATCACCTGAAGAAGAAAGCCTTTA 75
consensus_13804#1      TGAGAAGGGCTATGCATCACGCGTTCTCTTGAAGAGATGCACTGAAGAAGAAAGCCTTTA 157
consensus_13804#2      ------------------------------------------------------------
                                                                                   

consensus_13804#0      TGTTCTAAAGTTTTGGCA-GGACGCTTCCAC-TGGCACAAACGCTTCTCATGCCGCTAGA 898
consensus_13804#3      TGTTCTAAAGTTTTGGCACGGACGCTTCCACCTGGCACCAACGCTTCTCATGCCGCTAGA 135
consensus_13804#1      TGTTCTAAAGTTTTGGCA-GGACGCTTCCAC-TGGCACAAACGCTTCTCATGCCGCTAGA 215
consensus_13804#2      ----------------------------------------------------------GA 2
                                                                                 **

consensus_13804#0      TCACC-ACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAA 957
consensus_13804#3      TCACCCACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAA 195
consensus_13804#1      TCACC-ACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAA 274
consensus_13804#2      TCACC-ACGCTCTGAATCCTCATGGCTTTCTCAGCTGCCTTTCAGATCCCTTTGGCATAA 61
                       ***** ******************************************************

consensus_13804#0      GAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCAAAAGATAGCAACAAG 1017
consensus_13804#3      GAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCCAAAGATAGCAACAAG 255
consensus_13804#1      GAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCC-AAAGATAGCAACAAG 333
consensus_13804#2      GAATGCATAGTAGCTGTTAGCCTTGTCGATTTATCTCCAGTTCCAAAAGATAGCAACAAG 121
                       ******************************************** ***************

consensus_13804#0      TACTTTGCAACCTTCAGATGGCAGAAGTATCTGTAAACATGTCTGAAATGAGATGCTGCT 1077
consensus_13804#3      TTCTTTGCAACCTTCAGATGGCAGCAGTATCTGTAAACATGTCTGAAATGAGATGCTGCT 315
consensus_13804#1      TTCTTTGCAACCTTCAGATGGCAGCAGTATCTGTAAACATGTCTGAAATGAGATGCTGCT 393
consensus_13804#2      TACTTTGCAACCTTCAGATGGCAGAAGTATCTGTAAACATGTCTGAAATGAGATGCTGCT 181
                       * ********************** ***********************************

consensus_13804#0      GTTGGTCTCTGACTCCCTTCAAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGA 1137
consensus_13804#3      GTTGGTCTCTGACTCCCTTCAAA-GAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGA 374
consensus_13804#1      GTTGGTCTCTGACTCCCTTCAAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGA 453
consensus_13804#2      GTTGGTCTCTGACTCCCTTCAAAAGAGTAAAAGAATCAGAAATCAGACTGACTTGGTGGA 241
                       *********************** ************************************

consensus_13804#0      CTTAGCTATGAATGGTCCTATGAGCAATTAGCAATAAAGTTCCAACCCTTTTATTTTGGG 1197
consensus_13804#3      CTTAGCTATGAATGGTCCTATGAGCA-TTAGCA-TAAAGTTCCA-CCCTTTTATTTTGGG 431
consensus_13804#1      CTTAGCTATGAATGGTCCTATGAGCAATTAGCAATAAAGTTCCAACCCTTTTATTTTGGG 513
consensus_13804#2      CTTAGCTATGAATGGTCCTATGAGCAATTAGCAATAAAGTTCCAACCCTTTTATTTTGGG 301
                       ************************** ****** ********** ***************

consensus_13804#0      TGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGT 1257
consensus_13804#3      TGTTCTTCTAAAAAAAAAAAAAAA------------------------------------ 455
consensus_13804#1      TGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGT 573
consensus_13804#2      TGTTCTTCTATTTTGGTGTGTATATGTGCTAGTCTGGATTCCTTATCTTACTGCACTTGT 361
                       **********           * *                                    

consensus_13804#0      AATATGGGTCCTGTTATTATCGAATGGATTAGTAAACCATATCAAAAAAAAAAAAAAAAA 1317
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      AATATGGGTCCTGTTATTATCGAATGGATTAGTAAACCATATCAGCGAAAAGAATGTACG 633
consensus_13804#2      AATATGGGTCCTGTTAATAAAAAAAAAATTAGTAAACCATATCAGCGAAAAGAATGTACG 421
                                                                                   

consensus_13804#0      AAAAAAATGTCATGCCGTTACGTAGCGTATCGTTA------------------------- 1352
consensus_13804#3      ------------------------------------------------------------
consensus_13804#1      AGCAAGTTTCTGGAACTATAACTACATCAAAGTAGTTACTACAAGAAAAAGAAAAAAAA- 692
consensus_13804#2      AGCAAGTTTCTGGAACTATAACTACATCAAAGTAGTTACTACAAGAATATCATGATGTCT 481
                                                                                   

consensus_13804#0      -----------------
consensus_13804#3      -----------------
consensus_13804#1      -----------------
consensus_13804#2      GATGTGTCTGTTGAATC 498