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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1645 fasta sequence
[CTTTCCCCTCCAAATAAGCTCGTCCAGTCCAAGCACACAAGCCATTCCACCGCTCGCCGTCGCTGTCTCCCATCCCATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG-TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAA-AAATGCCTGATTCCCTG-AGCTCATAAACACACGAAGAAAGGAAATTTTGAGAAGTTGGAAGCTTCAAGCTGGCAATTNCAGGCAAATACACCTGACATGAATCCGGACAGGTACAAGGATCGTGAAAAGACATGCGAATGGATGAACCGATGCAGTGAAATTCTCTCTGCTATACTCCAGAGTCCAGAATGTGATATGCTGAACTGATCAGAANCAGACCTAGGCCTGGTTTAGGTCGTGTTTGGGAAAAGTTTGGGAAGAAGTTGATAGTTTGGAAAAAAAAAGTTAGGAGTTATATGTGCGTAGGAAAGTTTTGGATGTGATGTGATGTAATGGAAAGTTGGGATTTGGNGGGAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK103342 [CTTTCCCCTCCAAATAAGCTCGTCCAGTCCAAGCACACAAGCCATTCCACCGCTCGCCGTCGCTGTCTCCCATCCCATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGTGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAGTCGTCGTCCTTAATTTCAGTTC ]
[+] EMBL AK059601 [ CTCGCCGTCGCTGTCTCCCATCCCATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTAATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAA AAATGCCTGATTCCCTG AGCTCATAAACACACGAAGAAAGG ]
[+] EMBL C91759 [ TGTCTCCCATCCCATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCG CCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCANCG ]
[+] EMBL CB666531 [ CATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCA ]
[+] EMBL CB668403 [ CATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCA ]
[-] EMBL CB668404 [ ACAAGAGGTTCGCGAGGTTCGCCAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTTTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGGAATCGTCGTCCTTAATTTCAGTTCTGATTTCT ]
[-] EMBL CB666532 [ CCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATGGGCGAGAAAGGTTTCAACTGGGGGATGCCGGTGAAGAGCAAGTCGGAGCGCGTGATGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTGGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTTTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTC ]
[+] EMBL AU173074 [ AGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTTCTTCGTCNATCGCATCGTTCGTNGGTTTGTGATGCGNGAGAAAAAATNCT ]
[+] EMBL AU173075 [ GCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGANCCGCACCACTACCACCACCCGTTNTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAAaaaaaaa ]
[+] EMBL AU029770 [ ATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAACAAATGCNTGANTCCCTGAAGCTCATAAACACACGNAGAAAGGAAATTTTGAGAAGTTGGAAGCTTCAAGCTGGCAATTNCAGGCAAATACACCTGACATGAATCCGGACAGGTACAAGGATCGTGAAAAGACATGCGAATGGATGAACCGATGCAGTGAAATTCTCTCTGCTATACTCCAGAGTCCAGAATGTGATATGCTGAACTGATCAGAANCAGACCTAGGCCTGGTTTAGGTCGTGTTTGGGAAAAGTTTGGGAAGAAGTTGATAGTTTGGAAAAAAAAAGTTAGGAGTTATATGTGCGTAGGAAAGTTTTGGATGTGATGTGATGTAATGGAAAGTTGGGATTTGGNGGGAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1137 fasta sequence
[GAGGTTTTTGTTGGTATGGTCCAGGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTGAGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTTGTGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGGGAAATCTTACAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGGTCCGTTTCAATTCTTCGTCCCGACTCGATCATATCTTCTCCTGATGTTCTCTCGCCCTTCTTTCTCATCACCGATGGTTTCTTCTTGAATCCGAGTTGCAGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGANCGGGGCCCCTTCCTGGAGGATGAGCGTGAACTTGGCGCGCAAGATAGCGCACGAAGATCAAGGGATTCGGGCAACTTCAAACTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGNTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGANCCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU068647 [GAGGTTTTTGTTGGTATGGTCCAGGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTGAGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTTGTGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGGGAAATCTTACAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGGTCCGTTTCAATTCTTCGTCCCGACTCGATCATATCTTCTCCTGATGTTCTCTCGCCCTTCTTTCTCATCACCGATGGTTTCTTCTTGAATCCGAGTTGCAGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGANCGGGGCCCCTTCCTGGAGGATGAGCGTGAACTTGGCGCGCAAGATAGCGCACGAAGATCAAGGGATTCGGGCAACTTCAAACTCAGCAGCGC ]
[+] EMBL AU068646 [ TCGACGAGAAAGGNTCCGTTTCAATTCTTCGTCCCGACTCGATCATATCTTCTCCTGATGTTCTCTCGCCCTTCTTTCTCATCACCGATGGTTTCTTCTTGAATCCGAGTTGCAGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGT GCGCGCAAGATAGCGCACG AGATCAAGGGATTC GGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGNTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGANCCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU101244 [ GGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13815#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACNAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCANCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTGAGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTTGTGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGGGAAATCTTACAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACAAGAAAGGTTTCAACTGGGGGATGACGGTNAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGAATCA]
[+] EMBL CA755003 [CTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACNAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCANCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTGAGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTTGTGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGGGAAATCTTACAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACAAGAAAGGTTTCAACTGGGGGATGACGGTNAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGAATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13815#1 ------------------------------------------------------------
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 CTTTCCCCTCCAAATAAGCTCGTCCAGTCCAAGCACACAAGCCATTCCACCGCTCGCCGT 60
consensus_13815#1 ------------------------------------------------------------
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 CGCTGTCTCCCATCCCATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCT 120
consensus_13815#1 ------------------------------------------------------------
consensus_13815#2 ------------------------------------------------CTCGCCCTTCAG 12
consensus_13815#0 GCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGC 180
consensus_13815#1 ------------------------------------------------------------
consensus_13815#2 CTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACNAGATCCGCTCCGCGCG 72
consensus_13815#0 GGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGC 240
consensus_13815#1 ----GAGGTTTTTGTTGGTAT------GGTCCAG--GATG----ACGGAGGAGGCGACGA 44
consensus_13815#2 GCTCGCGCTCACCGATGTTACC---CCGACGCANCTGATG----ACGGAGGAGGCGACGA 125
consensus_13815#0 ACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGG 300
* * * * * *** ** ** * *** **
consensus_13815#1 GCGGGGACGCATCGCCGCCGAAC-----------GTGAAGACGATGAGCCTCATCGCGCG 93
consensus_13815#2 GCGGGGACGCATCGCCGCCGAAC-----------GTGAAGACGATGAGCCTCATCGCGCG 174
consensus_13815#0 CCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACC 360
* ****** ** **** * * ** ** ***** ** *
consensus_13815#1 GCAGGCGTTCGAGATCGAC---GAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTG 150
consensus_13815#2 GCAGGCGTTCGAGATCGAC---GAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTG 231
consensus_13815#0 TCA--CCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCT 418
** * * ***** * * * ** * ** **** * ** * * *
consensus_13815#1 AGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTT 210
consensus_13815#2 AGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTT 291
consensus_13815#0 GATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCT 478
** *** * * * * * * ** *** * *** ** * *
consensus_13815#1 G--TGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGG-GAAATCTTACA--- 264
consensus_13815#2 G--TGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGG-GAAATCTTACA--- 345
consensus_13815#0 CATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAA 538
* * ** * * * * *** * ** ** * ** *** * **
consensus_13815#1 --GGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCT 322
consensus_13815#2 --GGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCT 403
consensus_13815#0 GAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCT 598
**********************************************************
consensus_13815#1 CGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGA 382
consensus_13815#2 CGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGA 463
consensus_13815#0 CGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGA 658
************************************************************
consensus_13815#1 GGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGGTCCGTTTCAATTCT 442
consensus_13815#2 GGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACAAGAAAGG--------------- 508
consensus_13815#0 GGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGG--------------- 703
************************************* *******
consensus_13815#1 TCGTCCCGACTCGATCATATCTTCTCCTGATGTTCTCTCGCCCTTCTTTCTCATCACCGA 502
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 ------------------------------------------------------------
consensus_13815#1 TGGTTTCTTCTTGAATCCGAGTTGCAGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTC 562
consensus_13815#2 ---------------------------TTTCAACTGGGGGATGACGGTNAAGAGCAAGTC 541
consensus_13815#0 ---------------------------TTTCAACTGGGGGATGACGGTGAAGAGCAAGTC 736
********************* ***********
consensus_13815#1 GGAGCGCGTGCTGAGGCTGCTGGANCGGGGCCCCTTCCTGGAGGATGAGCGTGAACTTGG 622
consensus_13815#2 GGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTG- 600
consensus_13815#0 GGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTG- 795
************************ ***************************** * **
consensus_13815#1 CGCGCAAGATAGCGCACGAAGATCAAGGGATTCGGGCAACTTCAAACTCAGCAGCGCGCA 682
consensus_13815#2 CGCGCAAGATAGCGCACGAGAATCA----------------------------------- 625
consensus_13815#0 CGCGCAAGATAGCGCACGA-GATCAAGGGATTCGG-CAGCTTCAACCTCAGCAGCGCGCA 853
******************* ****
consensus_13815#1 TGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGG 742
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 TGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGG 913
consensus_13815#1 CCGGAGCAACTCGCGGTACGAGGGCAGNTGGAGGAGGGAGGCCTGCGTGGACGACGGCGA 802
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 CCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGA 973
consensus_13815#1 CAAGGAGANCCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGA 862
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 CAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGA 1033
consensus_13815#1 GCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCT 922
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 GCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCT 1093
consensus_13815#1 GCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTCTTCGTCGATCGCATCGTTCGTT 982
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 GCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTCTTCGTCGATCGCATCGTTCGTT 1153
consensus_13815#1 GGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGT 1042
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 GGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGT 1213
consensus_13815#1 GATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAAAAAA 1102
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 GATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAAAAAT 1273
consensus_13815#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 1137
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 GCCTGATTCCCTGAGCTCATAAACACACGAAGAAAGGAAATTTTGAGAAGTTGGAAGCTT 1333
consensus_13815#1 ------------------------------------------------------------
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 CAAGCTGGCAATTNCAGGCAAATACACCTGACATGAATCCGGACAGGTACAAGGATCGTG 1393
consensus_13815#1 ------------------------------------------------------------
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 AAAAGACATGCGAATGGATGAACCGATGCAGTGAAATTCTCTCTGCTATACTCCAGAGTC 1453
consensus_13815#1 ------------------------------------------------------------
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 CAGAATGTGATATGCTGAACTGATCAGAANCAGACCTAGGCCTGGTTTAGGTCGTGTTTG 1513
consensus_13815#1 ------------------------------------------------------------
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 GGAAAAGTTTGGGAAGAAGTTGATAGTTTGGAAAAAAAAAGTTAGGAGTTATATGTGCGT 1573
consensus_13815#1 ------------------------------------------------------------
consensus_13815#2 ------------------------------------------------------------
consensus_13815#0 AGGAAAGTTTTGGATGTGATGTGATGTAATGGAAAGTTGGGATTTGGNGGGAAAAAAAAA 1633
consensus_13815#1 ------------
consensus_13815#2 ------------
consensus_13815#0 AAAAAAAAAAAA 1645
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||