Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13829 cluster # 13829       Sequences # 14       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13829#0 length = 1211 sequences # 12  
consensus_13829#1 length = 1143 sequences # 2  

consensusID : consensus_13829#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1211
fasta sequence
                              [ACCAGGGACAGACAACCACCGCAAATTGGAGGGAACGGAGCAGAAGGTAGCGAAGCGAACCAAGAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAAGACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTCGCAGCGGAGGAGACGACCACCCCTGATCATGCCGGTTTCGTTGTTGGTTCCTTCCAATTCAACAACGATGCGAATAGCCCGACGACGACGACGACGACAA-CCGATCGGGCGAGCAAATA-TGGCAGGAAGGGGGACAAGATTGCACAGGGCATCAAAGAACATGTGACCCTCGGGCCGAAGCTATCGGAAAC-GGTCAAGGGGAAGCTCACG-CTGGGCGCCCGGATCCTCCAGGCCGGCGGCG-TGGAGAAGGTGTTCCGGCAGT-GGTTCTCCGTGGACAAGAACGAGAAGCTGCTCAGGGCGTCGCAGTGCTACCTGTCGACGACGGCCGGGCCGATCGCCGGCATGCTGTTCGTGTCGACGGAGCGGGTCGCGTTCCGCAGCGACCGGCCGCTGGCGGTGTCCGCCCCGGGCGGCGACAAGGTGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGCGAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCC-GTCGCGCAGGCGCGGCGATGACACGCACGAAGCGCGCAAGCGCGC-G-CA-CCCATGTCGTGGCGGAGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCTTGTGTGTGTGCGTGCGTGCATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGTTGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTGATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTAGGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTGTGCGGAATTGAAATTCATGAAGAAGTT--GGAT--GAAATGGTTTCGGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK069779             [ACCAGGGACAGACAACCACCGCAAATTGGAGGGAACGGAGCAGAAGGTAGCGAAGCGAACCAAGAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAAGACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTCGCAGCGGAGGAGACGACCACCCCTGATCATGCCGGTTTCGTTGTTGGTTCCTTCCAATTCAACAACGATGCGAATAGCCCGACGACGACGACGACGACAA CCGATCGGGCGAGCAAATA TGGCAGGAAGGGGGACAAGATTGCACAGGGCATCAAAGAACATGTGACCCTCGGGCCGAAGCTATCGGAAAC GGTCAAGGGGAAGCTCACG CTGGGCGCCCGGATCCTCCAGGCCGGCGGCG TGGAGAAGGTGTTCCGGCAGT GGTTCTCCGTGGACAAGAACGAGAAGCTGCTCAGGGCGTCGCAGTGCTACCTGTCGACGACGGCCGGGCCGATCGCCGGCATGCTGTTCGTGTCGACGGAGCGGGTCGCATTCCGCAGCGACCGGCCGCTGGCGGTGTCCGCCCCGGGCGGCGACAAGGTGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGCGAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCC GTCGCGCAGGCGCGGCGATGACACGCACGAAGCGCGCAAGCGCGC G CA CCCATGTCGTGGCGGAGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCTTGTGTATGTGCGTGCGTGCATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGTTGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTGATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTAGGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTGTGCGGAATTGAAATTCATGAAG                                                                             ]
[+] EMBL OSC0351              [                 ACCGCAAATTGGAGGGAACGGAGCAGAAGGTAGCGAAG NANCCAAGAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAAGACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTCGCAGCGGAGGAGACGACCACCCCTGATCATGCCGGTTTCNTTGTTGGTTCCTTCCAATTCAACAACGATGCGAATAGCCCGACGACGACGACGACGACAA CCGATCGGGCGAGCAAATA TGGCAGGAAGGGGGACAAGATTGCACAGGGCATCAAAGAACATGTGACCCTCGGGCCGAAGCTATCGGAAACGGGTCAAGGGGAAGCTCACGNTTGGGCGCCCGGNTCCTTCAGGNCGGCGGCGTTGGAGAAGGTTTTCCGGCANTGGGTTCTCCGTTGNCAAGAACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU063308             [                  CCGCAAATTGGAGGGAACGGAGCAGAAGGTAGCGAAGGGAGCCAAGAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAAGACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTCGCAGCGGAGGAGACGACCACCCCTGATCATGCCGGTTTCGTTGTTGGTTCCTTCCAATTCAACAACGATGCGAATAGCCCGACGACGACGACGACGACAA CCGATCGGGCGAGCAAATATTGGCAGGAAGGGGGACAAGATTNCACAGGGCATCAAAGAACATGTGACCCTCGGGCCGAAGCTATCGGAAAC GGTCAAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU063483             [                  CCGCAAATTGGAGGGAACGGAGCAGAAGGTAGCGANG TANCCAAGAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAAGACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTCGCAGCGGAGGAGACGACCACCCCTGATCATGCCGGTTTCGTTGTTGGTTCCTTCCAATTCAACAACGATGCGAATAGCCCGACGACGACGACGACGACAACCCGATCGGGCGNGCAAATA TGGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB655689             [                   CGCAAATTGGAGGGAACGGAGCAGAAGGTAGCGAAGCGAACCAAGAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAAGACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTCGCAGCGGAGGAGACGACCACCCCTGATCATGCCGGTTTCGTTGTTGGTTCCTTCCAATTCAACAACGATGCGAATAGCCCGACGACGACGACGACGACAA CCGATCGGGCGAGCAAATA TGGCAGGAAGGGGGACAAGATTGCACAGGGCATCAAAGAACATGTGACCCTCGGGCCGAAGCTATCGGAAAC GGTCAAGGGGAAGCTCACG CTGGGCGCCCGGATCCTCCAGGCCGGCGGCG TGGAGAAGGTGTTCCGGCAGT GGTTCTCCGTGGACAAGAACGAGAAGCTGCTCAGGGCGTCGCAGTGCTACCTGTCGACGACGGCCGGGCCGATCGCCGGCATGCTGTTCGTGTCGACGGAGCGGGTCGCGTTCCGCAGCGACCGGCCGCTGGCGGTGTCCGCCCCGGGCGGCGACAAGGTGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGCGAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCC GTCGCGCAGGCGCGGCGATGACACGCACGAAG                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB680718             [                   CGCAACTTGGAGGGAACGGAGCAGAAGGTAGCGAAGCGAACCAAGAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAAGACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTCGCAGCGGAGGAGACGACCACCCCTGATCATGCCGGTTTCGTTGTTGGTTCCTTCCAATTCAACAACGATGCGAATAGCCCGACGACGACGACGACGACAA CCGATCGGGCGAGCAAATA TGGCAGGAAGGGGGACAAGATTGCACAGGGCATCAAAGAACATGTGACCCTCGGGCCGAAGCTATCGGAAAC GGTCAAGGGGAAGCTCACG CTGGGCGCCCGGATCCTCCAGGCCGGCGGCG TGGAGAAGGTGTTCCGGCAGT GGTTCTCCGTGGACAAGAACGAGAAGCTGCTCAGGGCGTCGCAGTGCTACCTGTCGACGACGGCCGGGCCGATCGCCGGCATGCTGTTCGTGTCGACGGAGCGGGTCGCGTTCCGCAGCGACCGGCCGCTGGCGGTGTCCGCCCCGGGCGGCGACAAGGTGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGCGAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB680115             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTTCGTGTCGACGGAGCGGGTCGCGTTCCGCAGCGACCGGCCGCTGGCGGTGTCCGCCCCGGGCGGCGACAAGGTGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGCGAGAACAAGCACAAGCCCGAGCAGAAGTACATGGAGGTCGTCACCAACGACGGCTTCGAGTTTTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGTTGCACCACCTGGAGCAGGCC GTCGCGCAGGCGCGGCGATGACACGCACGAAGCGCGCAAGCGCGC G CA CCCATGTCGTGGCGGAGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCTTGTGTGTGTGCGTGCGTGCATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGTTGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTGATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTAGGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTGTGCGGAATTGAAATTCATGAAGAAGTTAGGGGA  GAAATGGTTTCGGCTGCAAAAAAAAAAAAA                                  ]
[+] EMBL BI796050             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGCGAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCC GTCGCGCAGGCGCGGCGATGACACGCACGAAGCGCGCGCGCGCGCAG CA CCCATGTCGTGGCGGAGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCGTGTGTGTGTGCGTGCGTGCATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGTTGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTGATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTAGGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTGTGCGGAATTGAAATTCATGAAGAAGTT  GGATGAGAAATGGTTTCGGCTGCAAAAAAA                                        ]
[+] EMBL AU092867             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAGCCGAGCGAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCCNTTCGCGCAGGCGCGGCGATNACACGCACGAAAGNCGCAAGCGCGC G CA CCCATNTCGTGGCGGAGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACNCTTGTGTGTGTNCGTGCGTGCATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGTTGATCGATCACAACATGTCGTTGTGTGTTGGGTCNCCATGGCTGGCCTGCTGGTGGATTGATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTAGGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTGTGCGGAATTGAAATTCATGAAGAAGTT  GGATGAGAAATGGTTTCGGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF325022             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCC GTCGCGCAGGCGCGGCGATGACACGCACGAAGCGCGCAAGCGCGC G CA CCCATGTCGTGGCGGAGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCTTGTGTGTGTGCGTGCGTGCATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGTTGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTGATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTAGGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTGTGCGGAATTGAAATTCATGAAGAAGTT  GGAT  GAAA                                                            ]
[+] EMBL AU097413             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           acgcaacnGCAAGCGCGC GCCACCCCATGTCGTGGCGGAGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCTTGTGTGTGTGCGTGCGTGCATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGTTGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTGATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTAGGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTGTGCGGAATTGAAATTCATGAAGAAGTT  GGAT  GAAAaaaaa                                                       ]
[+] EMBL AU093058             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATTTGNGTATGCGTAGGGTTGATCGATCNCAACATGTCGTTGTGTGTTGGGTCNCCATGGCTGGCCTGCTGGTGGATTGATCGATCGGCATNCAGTTTTGCAATTGCATCCANCAGGTTANATATAGGCGGCTTGATTAGGGCATGCGATGGCATGTNATGTTTTGTGGGGCGTGTGCGGAATTGAAATTCATGAANAAGTT  GGATNANAAATGGTTTCGGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13829#0 ACCAGGGACAGACAACCACCGCAAATTGGAGGGAACGGAGCAGAAGGTAGCGAAGCGAAC CAAGAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAA GACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTC GCAGCGGAGGAGACGACCACCCCTGATCATGCCGGTTTCGTTGTTGGTTCCTTCCAATTC AACAACGATGCGAATAGCCCGACGACGACGACGACGACAACCGATCGGGCGAGCAAATAT GGCAGGAAGGGGGACAAGATTGCACAGGGCATCAAAGAACATGTGACCCTCGGGCCGAAG CTATCGGAAACGGTCAAGGGGAAGCTCACGCTGGGCGCCCGGATCCTCCAGGCCGGCGGC GTGGAGAAGGTGTTCCGGCAGTGGTTCTCCGTGGACAAGAACGAGAAGCTGCTCAGGGCG TCGCAGTGCTACCTGTCGACGACGGCCGGGCCGATCGCCGGCATGCTGTTCGTGTCGACG GAGCGGGTCGCGTTCCGCAGCGACCGGCCGCTGGCGGTGTCCGCCCCGGGCGGCGACAAG GTGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGC GAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAG TTCTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCCGTC GCGCAGGCGCGGCGATGACACGCACGAAGCGCGCAAGCGCGCGCACCCATGTCGTGGCGG AGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCTTGTGTGTGTGCGTGCGTGC ATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGT TGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTG ATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTA GGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTGTGCGGAATTGAAATTCATGAAGAA GTTGGATGAAATGGTTTCGGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAA



consensusID : consensus_13829#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1143
fasta sequence
                              [CGTCCACCCCTAGGGAACGGAGCAGAAGGTAGCGAAGCGAACCACCAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAAGACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTCACACCGGAGGAGACGACCACCCCTGATCATGCCGGCTTCGTTGTTGGTTCCTTCCAATTCAACAACGATGCGAATAGCCCGACGACGACGACGACGACAACCGATCGGGCGAGCAAATATGGCAGGAAGGGGGACAAGATTGCACAGGGCATCCAACAACATGTGACCCTCGGGCCGAAGCTATCTGAAACGGTCAAGGGGAAGCTCACGCTGGGCGCCCGGATCCTCCAGGCCGGCGGCGTGGAGAAGGTGTTCCGGCACTGGTTCTCCGTGGACAAGAACGAGAAGCTGCTCACGGCGTCGCAGTGCTACCTGTCGACGACGGTCGGGCCGATCGCCGGGATGCTGTTCGTGTCGACGGAGCGGGTCGCGTTCCTCAACGACCGGCCGCTGGTGGTGTCCGCCCCGGGCGGCGACAAGGTGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGCGAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTACATGGGCTTCGTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCCGTCGCGCAGGCGCGGCGATGACACGCACGAAGCGCGCAAGCGCGCGCACCCATGTCGTGGCGGAGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCTTGTGTGTGTGCGTGCGTGCATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGTTGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTGATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTAGGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTAGGGGGAATTGAAATTCATGAAGAAGTTGGATGAGCTTTAAAGGGA]

[+] EMBL CB680114             [CGTCCACCCCTAGGGAACGGAGCAGAAGGTAGCGAAGCGAACCACCAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAAGACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTCACACCGGAGGAGACGACCACCCCTGATCATGCCGGCTTCGTTGTTGGTTCCTTCCAATTCAACAACGATGCGAATAGCCCGACGACGACGACGACGACAACCGATCGGGCGAGCAAATATGGCAGGAAGGGGGACAAGATTGCACAGGGCATCCAACAACATGTGACCCTCGGGCCGAAGCTATCTGAAACGGTCAAGGGGAAGCTCACGCTGGGCGCCCGGATCCTCCAGGCCGGCGGCGTGGAGAAGGTGTTCCGGCACTGGTTCTCCGTGGACAAGAACGAGAAGCTGCTCACGGCGTCGCAGTGCTACCTGTCGACGACGGTCGGGCCGATCGCCGGGATGCTGTTCGTGTCGACGGAGCGGGTCGCGTTCCTCAACGACCGGCCGCTGGTGGTGTCCGCCCCGGGCGGCGACAAGGTGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGCGAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTACATGGGCTTCGTCAGCTACCACC                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB655690             [                                                                                                                                                                                                                                                                                                                                                                          GAAGCTCACGCTGGGCGCCCGGATCCTCCAGGCCGGCGGCGTGGAGAAGGTGTTCCGGCAGTGGTTCTCCGTGGACAAGAACGAGAAGCTGCTCAGGGCGTCGCAGTGCTACCTGTCGACGACGGCCGGGCCGATCGCCGGCATGCTGTTCGTGTCGACGGAGCGGGTCGCGTTCCGCAGCGACCGGCCGCTGGCGGTGTCCGCCCCGGGCGGCGACAAGGTGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGCGAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCCGTCGCGCAGGCGCGGCGATGACACGCACGAAGCGCGCAAGCGCGCGCACCCATGTCGTGGCGGAGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCTTGTGTGTGTGCGTGCGTGCATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGTTGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTGATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTAGGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTAGGGGGAATTGAAATTCATGAAGAAGTTGGATGAGCTTTAAAGGGA]


>consensus_13829#1 CGTCCACCCCTAGGGAACGGAGCAGAAGGTAGCGAAGCGAACCACCAAGTCTTCAGTATT CCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAAGACCATGTGATTGGGATC CCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTCACACCGGAGGAGACGACC ACCCCTGATCATGCCGGCTTCGTTGTTGGTTCCTTCCAATTCAACAACGATGCGAATAGC CCGACGACGACGACGACGACAACCGATCGGGCGAGCAAATATGGCAGGAAGGGGGACAAG ATTGCACAGGGCATCCAACAACATGTGACCCTCGGGCCGAAGCTATCTGAAACGGTCAAG GGGAAGCTCACGCTGGGCGCCCGGATCCTCCAGGCCGGCGGCGTGGAGAAGGTGTTCCGG CACTGGTTCTCCGTGGACAAGAACGAGAAGCTGCTCACGGCGTCGCAGTGCTACCTGTCG ACGACGGTCGGGCCGATCGCCGGGATGCTGTTCGTGTCGACGGAGCGGGTCGCGTTCCTC AACGACCGGCCGCTGGTGGTGTCCGCCCCGGGCGGCGACAAGGTGCGCGTCCCGTACAAG GTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGCGAGAACAAGCACAAGCCC GAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTACATGGGCTTC GTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCCGTCGCGCAGGCGCGGCGATGA CACGCACGAAGCGCGCAAGCGCGCGCACCCATGTCGTGGCGGAGCTCGCTCTCGATCGGA TCGGTCTCTTCGTGTCGTACGCTTGTGTGTGTGCGTGCGTGCATCTGTGTCACTCTAGCT TGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGTTGATCGATCACAACATGT CGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTGATCGATCGGCATGCAGTT TTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTAGGGCATGCGATGGCATGT GATGTTTTGTGGGGCGTAGGGGGAATTGAAATTCATGAAGAAGTTGGATGAGCTTTAAAG GGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13829#0      ACCAGGGACAGACAACCACCGCAAATTGGAGGGAACGGAGCAGAAGGTAGCGAAGCGAAC 60
consensus_13829#1      ------------------CGTCCACCCCTAGGGAACGGAGCAGAAGGTAGCGAAGCGAAC 42
                                         *  * *     *******************************

consensus_13829#0      CAAGAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAA 120
consensus_13829#1      CACCAAGTCTTCAGTATTCCTTCCTTGCAAGCATCGTTAATGGAGGGGTCAACGAGTCAA 102
                       **  ********************************************************

consensus_13829#0      GACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTC 180
consensus_13829#1      GACCATGTGATTGGGATCCCGGTGAGCAACACCGCCTATGGCATAGAGGAGCCGGACTTC 162
                       ************************************************************

consensus_13829#0      GCAGCGGAGGAGACGACCACCCCTGATCATGCCGGTTTCGTTGTTGGTTCCTTCCAATTC 240
consensus_13829#1      ACACCGGAGGAGACGACCACCCCTGATCATGCCGGCTTCGTTGTTGGTTCCTTCCAATTC 222
                        ** ******************************* ************************

consensus_13829#0      AACAACGATGCGAATAGCCCGACGACGACGACGACGACAACCGATCGGGCGAGCAAATAT 300
consensus_13829#1      AACAACGATGCGAATAGCCCGACGACGACGACGACGACAACCGATCGGGCGAGCAAATAT 282
                       ************************************************************

consensus_13829#0      GGCAGGAAGGGGGACAAGATTGCACAGGGCATCAAAGAACATGTGACCCTCGGGCCGAAG 360
consensus_13829#1      GGCAGGAAGGGGGACAAGATTGCACAGGGCATCCAACAACATGTGACCCTCGGGCCGAAG 342
                       ********************************* ** ***********************

consensus_13829#0      CTATCGGAAACGGTCAAGGGGAAGCTCACGCTGGGCGCCCGGATCCTCCAGGCCGGCGGC 420
consensus_13829#1      CTATCTGAAACGGTCAAGGGGAAGCTCACGCTGGGCGCCCGGATCCTCCAGGCCGGCGGC 402
                       ***** ******************************************************

consensus_13829#0      GTGGAGAAGGTGTTCCGGCAGTGGTTCTCCGTGGACAAGAACGAGAAGCTGCTCAGGGCG 480
consensus_13829#1      GTGGAGAAGGTGTTCCGGCACTGGTTCTCCGTGGACAAGAACGAGAAGCTGCTCACGGCG 462
                       ******************** ********************************** ****

consensus_13829#0      TCGCAGTGCTACCTGTCGACGACGGCCGGGCCGATCGCCGGCATGCTGTTCGTGTCGACG 540
consensus_13829#1      TCGCAGTGCTACCTGTCGACGACGGTCGGGCCGATCGCCGGGATGCTGTTCGTGTCGACG 522
                       ************************* *************** ******************

consensus_13829#0      GAGCGGGTCGCGTTCCGCAGCGACCGGCCGCTGGCGGTGTCCGCCCCGGGCGGCGACAAG 600
consensus_13829#1      GAGCGGGTCGCGTTCCTCAACGACCGGCCGCTGGTGGTGTCCGCCCCGGGCGGCGACAAG 582
                       **************** ** ************** *************************

consensus_13829#0      GTGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGC 660
consensus_13829#1      GTGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGC 642
                       ************************************************************

consensus_13829#0      GAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAG 720
consensus_13829#1      GAGAACAAGCACAAGCCCGAGCAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAG 702
                       ************************************************************

consensus_13829#0      TTCTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCCGTC 780
consensus_13829#1      TTCTGGTACATGGGCTTCGTCAGCTACCACCGCTCGCTGCACCACCTGGAGCAGGCCGTC 762
                       ******* ****************************************************

consensus_13829#0      GCGCAGGCGCGGCGATGACACGCACGAAGCGCGCAAGCGCGCGCACCCATGTCGTGGCGG 840
consensus_13829#1      GCGCAGGCGCGGCGATGACACGCACGAAGCGCGCAAGCGCGCGCACCCATGTCGTGGCGG 822
                       ************************************************************

consensus_13829#0      AGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCTTGTGTGTGTGCGTGCGTGC 900
consensus_13829#1      AGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCTTGTGTGTGTGCGTGCGTGC 882
                       ************************************************************

consensus_13829#0      ATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGT 960
consensus_13829#1      ATCTGTGTCACTCTAGCTTGGTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGT 942
                       ************************************************************

consensus_13829#0      TGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTG 1020
consensus_13829#1      TGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATGGCTGGCCTGCTGGTGGATTG 1002
                       ************************************************************

consensus_13829#0      ATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTA 1080
consensus_13829#1      ATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTTAGATATAGGCGGCTTGATTA 1062
                       ************************************************************

consensus_13829#0      GGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTGTGCGGAATTGAAATTCATGAAGAA 1140
consensus_13829#1      GGGCATGCGATGGCATGTGATGTTTTGTGGGGCGTAGGGGGAATTGAAATTCATGAAGAA 1122
                       ***********************************  * *********************

consensus_13829#0      GTTGGATGAAATGGTTTCGGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1200
consensus_13829#1      GTTGGATGA----GCTTTAAAGGGA----------------------------------- 1143
                       *********    * **     * *                                   

consensus_13829#0      AAAAAAAAAAA 1211
consensus_13829#1      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)