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Oryza sativa
cluster # 1383 cluster # 1383       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1383#0 length = 1781 sequences # 2  

consensusID : consensus_1383#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1781
fasta sequence
                              [GCCTCCGATGCTGCCTGCCCTAACCCGCCGCGGCGTGGGTGCGAAGAGACGAACCCGAACCCGAACCCTAAGAGAAACCCTAAGCCGGCGGAGAGAGGGGAGGAGCCGCCCGTCCGCGCCGTCGGCTGCGGCGGATTCGCCTTCCTCTGCGCCCTCGCT-GGCCACACCGAGG-CTAT-CAG-TGGGATCTCTCTGCCTGTGG-GTTCCGA-CAAGCTTTACTCCGGCAGCGCTGACGGCTCCGTCCGCGTCTGGGACTGCAACTCTGGCAAGGTAGCTGGG-CTCTCCGCTCTCGGC-ACTCCCTTCAGGCTCTTTACGCACGATTCAAGTTGAGTAAATTCAAGTTGGGGGTTGCATCTGCGTCGATTCCTCCGTTGATTGTGGCGGTCTTTGAAGTGCTTCCATGAGATCAATTGGGGAGTACTATCTGATTGCTTCCTGTGGTCAGACATATTGGTACCAAATCAGTTTTTTCTTTGCAAGATTGGGGTTATCGGCATGCCGGACCGAATTGTTACGGGAATCTTTTCGCCTGC--TTGTGTACTGTTGATCAGTATATCAGGGTCAGTTTGCGAGCAAGGCAATGAGGCTGGTTTGGCTGATAAGCAAGGGGCTCTCTGGAATTACATTACAGTTCTCTCTGGCTGATGGTCCATACATGGTTTTGTCAAAAAAAAAGTAGTGAAAAAAAGAAAGAGAAAGTAAAAAAAAAAGAAAAAAAAAGATGTGAGATGATTGATGATTATATTTTCTTGGAAAGAGAAGACTGAACAAGGAGGAAAAGATAGGTGTCTGGCTGATAAAAAAATTCTAATATTTATTACATTGCATTGTTTTCTTAATGTTTCTGTCATAGTGCGTTGATGCCATCAAGATGGGAGGCAAGATTGGTTGCATGATTACCCATGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGCATGGAACACACAAACAGGGATGAAGTCCAGTCTCCGTGAACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGAGATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCAGTGGCCATGAGCGCCAAGTGATTTCGCTCGGTGTCTCAGTAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGGACCTTAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGCAACTGCATACGTCTGTTCGACCTGCCATCGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGCCGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGTGAAATCATCAATGTAGAAGCACTGTAGCGTCGTTGAGTAAAGATAGCAGCTCCTGCGAATTGTCGTGAGCTCCATCTCAGAATCCATGTAGTAATAACTTATGACAATGCTGATGTAAATATATTTGCCCAATCCTGAGGCCTGATTAGCAATATTATGTT]

[+] EMBL AK111592             [GCCTCCGATGCTGCCTGCCCTAACCCGCCGCGGCGTGGGTGCGAAGAGACGAACCCGAACCCGAACCCTAAGAGAAACCCTAAGCCGGCGGAGAGAGGGGAGGAGCCGCCCGTCCGCGCCGTCGGCTGCGGCGGATTCGCCTTCCTCTGCGCCCTCGCT GGCCACACCGAGG CTAT CAG TGGGATCTCTCTGCCTGTGG GTTCCGA CAAGCTTTACTCCGGCAGCGCTGACGGCTCCGTCCGCGTCTGGGACTGCAACTCTGGCAAGGTAGCTGGG CTCTCCGCTCTCGGC ACTCCCTTCAGGCTCTTTACGCACGATTCAAGTTGAGTAAATTCAAGTTGGGGGTTGCATCTGCGTCGATTCCTCCGTTGATTGTGGCGGTCTTTGAAGTGCTTCCATGAGATCAATTGGGGAGTACTATCTGATTGCTTCCTGTGGTCAGACATATTGGTACCAAATCAGTTTTTTCTTTGCAAGATTGGGGTTATCGGCATGCCGGACCGAATTGTTACGGGAATCTTTTCGCCTGC  TTGTGTACTGTTGATCAGTATATCAGGGTCAGTTTGCGAGCAAGGCAATGAGGCTGGTTTGGCTGATAAGCAAGGGGCTCTCTGGAATTACATTACAGTTCTCTCTGGCTGATGGTCCATACATGGTTTTGTCAAAAAAAAAGTAGTGAAAAAAAGAAAGAGAAAGTAAAAAAAAAAGAAAAAAAAAGATGTGAGATGATTGATGATTATATTTTCTTGGAAAGAGAAGACTGAACAAGGAGGAAAAGATAGGTGTCTGGCTGATAAAAAAATTCTAATATTTATTACATTGCATTGTTTTCTTAATGTTTCTGTCATAGTGCGTTGATGCCATCAAGATGGGAGGCAAGATTGGTTGCATGATTACCCATGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGCATGGAACACACAAACAGGGATGAAGTCCAGTCTCCGTGAACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGAGATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCAGTGGCCATGAGCGCCAAGTGATTTCGCTCGGTGTCTCAGTAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGGACCTTAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGCAACTGCATACGTCTGTTCGACCTGCCATCGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGCCGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGTGAAATCATCAATGTAGAAGCACTGTAGCGTCGTTGAGTAAAGATAGCAGCTCCTGCGAATTGTCGTGAGCTCCATCTCAGAATCCATGTAGTAATAACTTATGACAATGCTGATGTAAATATATTTGCCCAATCCTGAGGCCTGATTAGCAATATTATGTT]
[+] EMBL BI807296             [                                                                                                                                                       gCCT GCTGGGCCCNCCCGNGGTCTATCCAGTTGGGATCTCTCTCCCTGTGGNTTTCCGATCAAGCTTTACTCC GCAGCGCTGACGGCTCCGTCCGCGTCTGGGACTGCAACTCTGGCAAGTTAGCTGGGTCTCTCCGCTGTCGGCTACTCCCTTCAGGCTCTTTACGCACGATTCAAGTTGAGTAAATTCAAGTTGGGGGTTGCATCTGCGTCGATTCCTCCGTTGATTGTGGCGNTCTTTGAAGTGCTTCCATGAGATCAATTGGGGAGTACTATCTGATTGCTTCCTGTGGTCAGACATATTGGTACCAAATCAGTTTTTTCTTTGCAAGATTGGGGTTATCGGCATGCCGGACCGAATTGTTACGGGAATCTTTTCGCCTGCCNCTGTGTACTGTTGATCAGTATATCAGGGTCAGTTTGCGAGCAAGGCAATGAGGCTGGTTTGGCTGATAAGCAAGGGGCTCTCTGGAATTACATTACAGTTCTCTCTGGCTGATGGTCCATACATGGTTTTGTCAAAAAAAAAGTAGTGAAAAAAAGCAAGAGAAAGTAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_1383#0 GCCTCCGATGCTGCCTGCCCTAACCCGCCGCGGCGTGGGTGCGAAGAGACGAACCCGAAC CCGAACCCTAAGAGAAACCCTAAGCCGGCGGAGAGAGGGGAGGAGCCGCCCGTCCGCGCC GTCGGCTGCGGCGGATTCGCCTTCCTCTGCGCCCTCGCTGGCCACACCGAGGCTATCAGT GGGATCTCTCTGCCTGTGGGTTCCGACAAGCTTTACTCCGGCAGCGCTGACGGCTCCGTC CGCGTCTGGGACTGCAACTCTGGCAAGGTAGCTGGGCTCTCCGCTCTCGGCACTCCCTTC AGGCTCTTTACGCACGATTCAAGTTGAGTAAATTCAAGTTGGGGGTTGCATCTGCGTCGA TTCCTCCGTTGATTGTGGCGGTCTTTGAAGTGCTTCCATGAGATCAATTGGGGAGTACTA TCTGATTGCTTCCTGTGGTCAGACATATTGGTACCAAATCAGTTTTTTCTTTGCAAGATT GGGGTTATCGGCATGCCGGACCGAATTGTTACGGGAATCTTTTCGCCTGCTTGTGTACTG TTGATCAGTATATCAGGGTCAGTTTGCGAGCAAGGCAATGAGGCTGGTTTGGCTGATAAG CAAGGGGCTCTCTGGAATTACATTACAGTTCTCTCTGGCTGATGGTCCATACATGGTTTT GTCAAAAAAAAAGTAGTGAAAAAAAGAAAGAGAAAGTAAAAAAAAAAGAAAAAAAAAGAT GTGAGATGATTGATGATTATATTTTCTTGGAAAGAGAAGACTGAACAAGGAGGAAAAGAT AGGTGTCTGGCTGATAAAAAAATTCTAATATTTATTACATTGCATTGTTTTCTTAATGTT TCTGTCATAGTGCGTTGATGCCATCAAGATGGGAGGCAAGATTGGTTGCATGATTACCCA TGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGCATGGAACACACAAACAGG GATGAAGTCCAGTCTCCGTGAACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGA GATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAA GGGTGACTCTGGACCAGTGGCAATCCTCAGTGGCCATGAGCGCCAAGTGATTTCGCTCGG TGTCTCAGTAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGGACCT TAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCT TTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGC TTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGGAGTACGCAC GCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAG CAACTGCATACGTCTGTTCGACCTGCCATCGTTCGACGAGATGGGCAAGCTTTTCTCCAA GAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGC CGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGT GAAATCATCAATGTAGAAGCACTGTAGCGTCGTTGAGTAAAGATAGCAGCTCCTGCGAAT TGTCGTGAGCTCCATCTCAGAATCCATGTAGTAATAACTTATGACAATGCTGATGTAAAT ATATTTGCCCAATCCTGAGGCCTGATTAGCAATATTATGTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)