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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13830#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 886 fasta sequence
[GCAGCAAAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG-TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC-TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTCCCGGACATGTCGGAGGAGCGGGACGAGTGCGACGGGATGGCGACCGTCGCCGGCGACAGGTTCCTCGCCGTGAGCGGGTACCGCACGGCGAGGCAGGGCGGGTTCGAGCGCGACGCCGAGTGGTTCGACCCGGCGGCGCGCGCGTGGCGCCGCCTCGACCGCGTCCGCGCCCCTCCCTCCGCCGCCCAC]
[+] EMBL OSC897 [GCAGCAAAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGG GNCNGNTNCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACG CCGCGTTTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGC ]
[+] EMBL CB644684 [ aAAAAACATTAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGAC ]
[+] EMBL AU162763 [ AAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGC CNACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCC ]
[+] EMBL CB667566 [ AGAACCTATTCCCAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCCAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTG ]
[+] EMBL CB645994 [ AAAACCCTCTGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTC ]
[+] EMBL CB660640 [ AAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGTGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCG ]
[+] EMBL CB636745 [ gAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCTCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGG ]
[+] EMBL CA755528 [ AAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGACGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGTACCCCGATACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTTTGCCGGAGCGCGCCGTCGATGCGGTTGGCGAGGTCCTTCTTTCGC TGCGCGGAGGTC GCGGGAGGATCTACGGGCCGGGg ]
[+] EMBL CB647074 [ agattccccTCAGAGAAAAACAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCTACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACCACGTGACGACGGGGGAGTGGAGGCGGGA ]
[+] EMBL CB669593 [ tAGAAAAAAGAATGAGGAGCCCGAGGAGCCGAGCGCTAGAGCGCGACGCCGGCGGCGACGCCGACGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACCACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGC ]
[+] EMBL CB662102 [ CGACGCCCGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTCCCGGACATGTCGGAGGAGCGGGACGAGTGCGACGGGATGGCGACCGTCGCCGGCGACAGGTTCCTCGCC ]
[+] EMBL CB675674 [ GTCTAGCTCTTCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACTGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCAAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACCACTAGCACAACAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTCCCGGACATGTCAGATGAGCGGGACGAGTGCGACCGG ]
[+] EMBL AU163663 [ CGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTCCCGGACATGTCGGAGGAGCGGGACGAGTGCGACGGGATGGCGACCGTCGCCGGCGACAGGTTCCTCGCCGTGAGCGGGTACCGCACGGCGAGGCAGGGCGGGTTCGAGCGCGACGCCGAGTGGTTCGACCCGGCGGCGCGCGCGTGGCGCCGCCTCGACCGCGTCCGCGCCCCTCCCTCCGCCGCCCAC]
consensusID : consensus_13830#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence
[AAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGNTCCGTTCGGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTTGGAGGAGCGCGGCGGCGACGCCGCGTTTCGCCATGGNGCGCGCCGAGGCGGGCGCCAACGAGATTTTGGTTTACTTCTCCANTTCGCGAACCCCGCGGCGGCCGCCACCGCGGTTGGACTCCANTTTTTGT]
[+] EMBL C99083 [AAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGNTCCGTTCGGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTTGGAGGAGCGCGGCGGCGACGCCGCGTTTCGCCATGGNGCGCGCCGAGGCGGGCGCCAACGAGATTTTGGTTTACTTCTCCANTTCGCGAACCCCGCGGCGGCCGCCACCGCGGTTGGACTCCANTTTTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13830#0 GCAGCAAAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGC 60
consensus_13830#1 ------AAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGC 54
******************************************************
consensus_13830#0 GCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCC 120
consensus_13830#1 GCTAGAGCGCGACGCCGGCGGNTCCGTT-CGGAGCACGTCGAGCTCATCCCGGGGATGCC 113
********************* ** *****************************
consensus_13830#0 CGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCG 180
consensus_13830#1 CGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCG 173
************************************************************
consensus_13830#0 GCGCGTGTGCCGCGGGT-GGAGGAGCGCGGCGGCGACGCCCGCGTTCGCCATGGCGCGCG 239
consensus_13830#1 GCGCGTGTGCCGCGGGTTGGAGGAGCGCGGCGGCGACGCCGCGTTTCGCCATGGNGCGCG 233
***************** ********************** ********** *****
consensus_13830#0 CCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGG 299
consensus_13830#1 CCGAGGCGGGCGCCAACGAGATTTTGGTTTACTT-CTCCANTTCGCGAACCCCGCGGCGG 292
******************** ********** * ***** *******************
consensus_13830#0 CCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGT 359
consensus_13830#1 CCGCCACCGCGGTTG--GACTCCANTTTTTGT---------------------------- 322
**** * ** * * ** * *
consensus_13830#0 ACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGC 419
consensus_13830#1 ------------------------------------------------------------
consensus_13830#0 CGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGT 479
consensus_13830#1 ------------------------------------------------------------
consensus_13830#0 GGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCG 539
consensus_13830#1 ------------------------------------------------------------
consensus_13830#0 TGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTCTTCGCGTGCGCGGAGGCCG 599
consensus_13830#1 ------------------------------------------------------------
consensus_13830#0 GCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGG 659
consensus_13830#1 ------------------------------------------------------------
consensus_13830#0 AGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTCCCGGACATGTCGGAGGAGCGGG 719
consensus_13830#1 ------------------------------------------------------------
consensus_13830#0 ACGAGTGCGACGGGATGGCGACCGTCGCCGGCGACAGGTTCCTCGCCGTGAGCGGGTACC 779
consensus_13830#1 ------------------------------------------------------------
consensus_13830#0 GCACGGCGAGGCAGGGCGGGTTCGAGCGCGACGCCGAGTGGTTCGACCCGGCGGCGCGCG 839
consensus_13830#1 ------------------------------------------------------------
consensus_13830#0 CGTGGCGCCGCCTCGACCGCGTCCGCGCCCCTCCCTCCGCCGCCCAC 886
consensus_13830#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||