These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 971 fasta sequence [CCCATCGCCGCGGCGGCCTATCCATCTCTCTCCCCCGCACACGCTCTCCCTCCCATGGCGCTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCGCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC-TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA-GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCG-TG-CACTGGTGAAGA-TCA-GCACC-GC-AA-ACAAAGTTACTCTGAGGGG-AGAA-GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAATCATTCCTGATATCTGATGAGAACAAAAGCTCAACTTTACATCCTCATATAGTCACATAAGACAATTAAAAAAAA] [+] EMBL AK068283 [CCCATCGCCGCGGCGGCCTATCCATCTCTCTCCCCCGCACACGCTCTCCCTCCCATGGCGCTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCGCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCG TG CACTGGTGAAGA TCA GCACC GC AA ACAAAGTTACTCTGAGGGG AGAA GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAA ] [+] EMBL AK104434 [ CCGCGGCGGCCTATCCATCTCTCTCCCCCGCACACGCTCTCCCTCCCATGGCGCTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCGCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCG TG CACTGGTGAAGA TCA GCACC GC AA ACAAAGTTACTCTGAGGGG AGAA GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGC ] [+] EMBL CF325025 [ ggcacgaggCTCCCCCGCACACGCTCTCCCTCCCATGGCGCTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCGCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGT ] [+] EMBL AB022675 [ GGCGCTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCGCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCG TG CACTGGTGAAGA TCA GCACC GC AA ACAAAGTTACTCTGAGGGG AGAA GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAAT ] [+] EMBL OSS2771A [ CCCTCCCCTCCACCTCCAAGTTCCACCCTCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC TCGCGTNCGCNGNCTCCGCCGCCGAGGCCGCCGAGCCTGTNGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGTGCTGCGAAAGTACGTAAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCA NGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCG CCGTTTCGTGCTCCAGGAGGG ] [+] EMBL OSS2865A [ CCCTCCCCTCCACCTCCAAGTTCCACCCTCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGNCGCGTCGCGCNNC TCGCNNTCGNCGCCTCCGCCGCCGAGGTCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGNCT ] [+] EMBL OSS3132A [ CCCTCCCCTCCACCTCCAAGTTCCACCCTCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCCTTCGCGGTCGCGGNCTCCGCCGCCGAGGCCGCCGAGCCTGTNGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATNAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGGGCTGC ] [+] EMBL BE230766 [ taCAAGTTCCACCCGCTCCCCCTCCTACACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGNCGCGCCGCGCGTC TCGYGTTCGCCGTCTCCGCCGCCGAGGCCGCCGAGCCTCTCGAGGTGGAGGAGGCGNCCGCCGAGGGACGGSGCGSATGAGGTGGTGGCCGTAGAGGACGAGCTSTCCGGACCGGCGCTGCGAAAGTACGTGAAGaa ] [-] EMBL CB650466 [ CGCGCGCC TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCG TG CACTGGTGAAGA TCA GCACC GC AA ACAAAGTTACTCTGAGGGG AGAA GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAAGTTTATTGAGGTCACAAAAGGCAATTATC TGAAAaaaaaaga ] [+] EMBL AU101965 [ ATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTC GGCCAAGCCCAGGCCATTTGCCTC GCGTCGCCCGTTGCCACTGGTGAAGATTCA GCACC GC AA ACAAAGTTACTCTGAGGGGTAGAA GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAATCATTCCTGATATCTGATGAGAACAAAA ] [+] EMBL CF196069 [ TG CACTGGTGAAGA TCA GCACC GC AA ACAAAGTTACTCTGAGGGG AGAA GGTTTGCTGACAAGAGACACCCGTATAGTCGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCACTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAATGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTCATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAATCATTCCTGATATCTGATGAGAACAGCTGCTCAACTTTACATCCTCATATAGTCACATAAGACAATTAAAAAAAA] [+] EMBL AU097189 [ CTGGTGAAGA TCATGCACCTGCTAANACAAAGTTACTCTGAGGGG AGAANGGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAATCATTCCTGATATCTGATGAGAACAAAAa ] [+] EMBL AK060503 [ AGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAAT ] consensusID : consensus_13831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [CCATCCCCTCCACCTCCAAGTTCCACCCTNNCCCCCTCCTCCACCTCCGNTTCCCCTCCTCCTCCTCCTCCCGNCGCGCCGCGCGAATCGNGTACGACGCCTCCGCCGCCGAGGACGACGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGAGGACGAGGCGGATGAGGTGNTGGCCGTGGAGGACGAGCTGTCCGGACCGNCGNTGCGAAAGTACGTGAAGCAGCGGNTTCCCGGGGGCTTCGCGNCGCAGGGAATC] [+] EMBL OSS3411A [CCATCCCCTCCACCTCCAAGTTCCACCCTNNCCCCCTCCTCCACCTCCGNTTCCCCTCCTCCTCCTCCTCCCGNCGCGCCGCGCGAATCGNGTACGACGCCTCCGCCGCCGAGGACGACGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGAGGACGAGGCGGATGAGGTGNTGGCCGTGGAGGACGAGCTGTCCGGACCGNCGNTGCGAAAGTACGTGAAGCAGCGGNTTCCCGGGGGCTTCGCGNCGCAGGGAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13831#0 CCCATCGCCGCGGCGGCCTATCCATCTCTCTCCCCCGCACACGCTCTCCCTCCCATGGCG 60 consensus_13831#1 ------------------------------------------------------------ consensus_13831#0 CTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCG 120 consensus_13831#1 -------------------------------CCATCCCCTCCACCTCCAAGTTCCACCCT 29 ** ************************* consensus_13831#0 CTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCCTC 180 consensus_13831#1 NNCCCCCTCCTCCACCTCCGNTTCCCCTCCTCCTCCTCCTCCCGNCGCGCCGCGCGAATC 89 ****************** *********************** *********** ** consensus_13831#0 GCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCC 240 consensus_13831#1 GNGTACGACGCCTCCGCCGCCGAGGACGACGAGCCTGTCGAGGTGGAGGAGGCGCCCGCC 149 * * ** ***************** ** ******************************* consensus_13831#0 GAGGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGA 300 consensus_13831#1 GAGGACGAGGCGGATGAGGTGNTGGCCGTGGAGGACGAGCTGTCCGGACCGNCGNTGCGA 209 ******* ************* ***************************** ** ***** consensus_13831#0 AAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGC 360 consensus_13831#1 AAGTACGTGAAGCAGCGGNTTCCCGGGGGCTTCGCGNCGCAGGGAATC------------ 257 ****************** ***************** ***** * *** consensus_13831#0 CGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATC 420 consensus_13831#1 ------------------------------------------------------------ consensus_13831#0 AACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAG 480 consensus_13831#1 ------------------------------------------------------------ consensus_13831#0 GTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGG 540 consensus_13831#1 ------------------------------------------------------------ consensus_13831#0 GGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCGTGCACTGGTGAAG 600 consensus_13831#1 ------------------------------------------------------------ consensus_13831#0 ATCAGCACCGCAAACAAAGTTACTCTGAGGGGAGAAGGTTTGCTGACAAGAGACACCCGT 660 consensus_13831#1 ------------------------------------------------------------ consensus_13831#0 ATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAG 720 consensus_13831#1 ------------------------------------------------------------ consensus_13831#0 CGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTT 780 consensus_13831#1 ------------------------------------------------------------ consensus_13831#0 GTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTA 840 consensus_13831#1 ------------------------------------------------------------ consensus_13831#0 ATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAATCAT 900 consensus_13831#1 ------------------------------------------------------------ consensus_13831#0 TCCTGATATCTGATGAGAACAAAAGCTCAACTTTACATCCTCATATAGTCACATAAGACA 960 consensus_13831#1 ------------------------------------------------------------ consensus_13831#0 ATTAAAAAAAA 971 consensus_13831#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||