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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1049 fasta sequence
[AAATTAACCCAAGTAGGATGCATTTTTCTTGACCTGAATCATGCTTGCTTTGCAGCATGCATGCCTGCCGTAAAGTCTAAGCTTCACATGGTTATTATTAGTTAATTAATAGTAGAAATAATATAGTCATTTCTGCTACCTACTCCCACTTTCTGAGAGAATACCTGTTGATAAATTAAACTTCCTGTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCG-AAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTTGGAATCGGATTCCCGGTACTGAACCTGCTTTTTCTGCCAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AK109288 [AAATTAACCCAAGTAGGATGCATTTTTCTTGACCTGAATCATGCTTGCTTTGCAGCATGCATGCCTGCCGTAAAGTCTAAGCTTCACATGGTTATTATTAGTTAATTAATAGTAGAAATAATATAGTCATTTCTGCTACCTACTCCCACTTTCTGAGAGAATACCTGTTGATAAATTAAACTTCCTGTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCG AAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTT ]
[+] EMBL AU198281 [ GCGAAAGTNGGGCCCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCNAGTCGTCGGTGTCCAANANATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTTGGAATCGGATTCCCGGTACTGAACCTGCTTTTTCTGCCAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1005 fasta sequence
[CAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGG-GG-A-CACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCA-NACCGGCTTCGGAGACACCACCGTNGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAG-TGTTCCGTGGTGGGCGGCACGGGCAA-TTCAGGATGGCCACCGGCTACGTGGCGTGGAAGACGGCCAGCATGAACTCCAGCACCTGGCGTGTACTAGCCCGACGTCTACGCGACCACCGCCAACGCGCAAACTAATCGACGCCCTCCGGCACACATATATCATCAGACGACGCGTTGCCGACCACATCTCACTACGCCAAGAGTAGCGATGTCTCCAGCCACTTCTACGCTCCCTCAGTGCACTCCGAGTTGCTACTGCCGATGATACTGTTGTGGTTCTGCCTCTAGTTGATCGTTATAGTGTGAGGTAAGACATAGAGTTAGTATTTGTTTCGAGCCTTATCTAGGCTGCGGCCCGGCTCGTTTTCGTTACAGGCCGCTATACAGTCATGCCGCGTAGTCAGGTGAGCAGGCTTATCTGAAAATTAGGCCTCAGCACCGAGCAGCACTGGCAGTGAACAGTTCGTGCGCGCCGCGACCTGTGAGATTCACAGTACACCCCTCGTGTGTGACTTGTCGTTTCGTTCCTCCTAATCTAGTCTTTGTATGTGCGATCCATCGGCCACGCCGCATGCTCTTCCGTTGTCTTGCCTACTAC]
[+] EMBL C72987 [CAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGG GG A CACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCA NACCGGCTTCGGAGACACCACCGTNGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAG TGTTCCGTGGTGGGCGGCACGGGCAA TTCAGGATGGC ]
[+] EMBL BE039812 [ CGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCTCCGCTCCTGCGGGCGGCGG A CACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTG TCCGGGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGCGTGGAAGACGGCCAGCATGAACTCCAGCACCTGGCGTGTACTAGCCCGACGTCTACGCGACCACCGCCAACGCGCAAACTAATCGACGCCCTCCGGCACACATATATCATCAGACGACGCGTTGCCGACCACATCTCACTACGCCAAGAGTAGCGATGTCTCCAGCCACTTCTACGCTCCCTCAGTGCACTCCGAGTTGCTACTGCCGATGATACTGTTGTGGTTCTGCCTCTAGTTGATCGTTATAGTGTGAGGTAAGACATAGAGTTAGTATTTGTTTCGAGCCTTATCTAGGCTGCGGCCCGGCTCGTTTTCGTTACAGGCCGCTATACAGTCATGCCGCGTAGTCAGGTGAGCAGGCTTATCTGAAAATTAGGCCTCAGCACCGAGCAGCACTGGCAGTGAACAGTTCGTGCGCGCCGCGACCTGTGAGATTCACAGTACACCCCTCGTGTGTGACTTGTCGTTTCGTTCCTCCTAATCTAGTCTTTGTATGTGCGATCCATCGGCCACGCCGCATGCTCTTCCGTTGTCTTGCCTACTAC]
[+] EMBL OSS16578A [ GCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCNTGCGCCGCGCCGCCGCTCCTGCGGGCGG GGNA CACGNACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGG CAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCA NACCGGCTTCGGAGACACCACNGTGGTCGACG CGCGCTCACGGAGACCTCGTCGGCGACGTCCCC ]
[+] EMBL OS1321742 [ CCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGANCGG GN ANCACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCA NACCGGCTTCGGAGACACCACNGTNGTCGACGAGNGGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAAGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGA ]
consensusID : consensus_13834#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 954 fasta sequence
[TCGTCCAGTCCAGGTTCAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGC-AGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTG-TCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTG-TTTTCGAGTCTTTTAGTTTG-TT-GGAATC-GGATTCCCGTACTG-AACCTGCTTTTACTGC-AAGTTAATTGTTTGGTTGGTTGGTTGCCTTCCTGTCACTCCACCTTGACCGTGAAGGTATTACTGTACTGCAGCATAAAGGTCCCCACCTTGACCACCATCTTCACCATCTATCTATACATTTTATTTTCACAAAAA]
[+] EMBL AK106062 [TCGTCCAGTCCAGGTTCAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGC AGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTG TCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTG TTTTCGAGTCTTTTAGTTTG TT GGAATC GGATTCCCGTACTG AACCTGCTTTTACTGC AAGTTAATTGTTTGGTTGGTTGGTTGCCTTCCTGTCACTCCACCTTGACCGTGAAGGTATTACTGTACTGCAGCATAAAGGTCCCCACCTTGACCACCATCTTCACCATCTATCTATACATT ]
[+] EMBL AK119790 [ CCAGTCCAGGTTCAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGC AGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTG TCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTG TTTTCGAGTCTTTTAGTTTG TT GGAATC GGATTCCCGTACTG AACCTGCTTTTACTGC AAGTTAATTGTTTGGTTGGTTGGTTGCCTTCCTGTCACTCCACCTTGACCGTGAAGGTATTACTGTACTGCAGCATAAAGGTCCCCACCTTGACCACCATCTTCACCATCTATCTATACATTTTA ]
[-] EMBL C97220 [ CTGATGATGTGC TTAACNTCTACTTCACCGCCGGCGAGAACAACGGCAAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGNTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTATGTNTTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTG TC CCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACNNCGAAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCT ]
[+] EMBL AU101213 [ AAAAACGGC AGCACNATCGCGTTAATCGGCCACGAGGACACCACGGCCACGNTNAGGGAGCTGTCCGTGGTGGGCGGCAC GGNAAATTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTTCGCCNTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTTCGAGTTTTAGATTTTGNTTGGGNATCGGGNNTCCCGTACTGAAACCTGTTTTTACTGCAAANTTANTTNTTTGNTTGNTTGNTTGCNTTCCTGTCACTCCACCTTGACCGTGAAGGTATTACTGTACTGCAGCATAAAGGTCCCCACCTTGACCACCATCTTCACCATCTATCTATACATTTTATTTTCACAAAAA]
consensusID : consensus_13834#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[TGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGNCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGNNGCGACAGGTGGNGTGGNTGAATGCGTGCGTATGGNNTTTGGTGGTGNCCNTTGNTTGNNNNTNNTTNNNNNNNNNTNNNNTNNTNNNTNTCNNNNNTTTTTTGGGGNTTTTTTTTGTTTTNNNTTTTTTNTTTGTTGGNTTGGGTTT]
[+] EMBL CA756126 [TGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGNCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGNNGCGACAGGTGGNGTGGNTGAATGCGTGCGTATGGNNTTTGGTGGTGNCCNTTGNTTGNNNNTNNTTNNNNNNNNNTNNNNTNNTNNNTNTCNNNNNTTTTTTGGGGNTTTTTTTTGTTTTNNNTTTTTTNTTTGTTGGNTTGGGTTT]
consensusID : consensus_13834#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[CGTGAACCCTCTACTTCACCGCCGGCGAGAAACAACGCAGCACCATCCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGACTGTCCTGGTGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAATCGGGCCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTTGGAATCGGATTCCCGTACTGAACCTGCTTTTACTGCAAGTTAATTGTTTGGTTGGTTGGTTGCCTTCCTGTCACTCCACCTTGAGCGTGAAGGCAGCATAAAGGTCCCCCCCTTGAGCAAAAAAAAAA]
[+] EMBL BI795931 [CGTGAACCCTCTACTTCACCGCCGGCGAGAAACAACGCAGCACCATCCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGACTGTCCTGGTGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAATCGGGCCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTTGGAATCGGATTCCCGTACTGAACCTGCTTTTACTGCAAGTTAATTGTTTGGTTGGTTGGTTGCCTTCCTGTCACTCCACCTTGAGCGTGAAGGCAGCATAAAGGTCCCCCCCTTGAGCAAAAAAAAAA]
consensusID : consensus_13834#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGNCTAAGCTTCACATGGTTATTATTAGTTAATTAATAGTAGAAATAATATAGTCATTTCTGCTACCTACTCCCACTTTCTGAGAGAATACCTGTTGATAAATTAAACTTCCTGTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGNGCCC]
[-] EMBL C97221 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGNCTAAGCTTCACATGGTTATTATTAGTTAATTAATAGTAGAAATAATATAGTCATTTCTGCTACCTACTCCCACTTTCTGAGAGAATACCTGTTGATAAATTAAACTTCCTGTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGNGCCC]
consensusID : consensus_13834#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 124 fasta sequence
[TCTTTATTGTGAAAATAAAATGTATAGATAGGTGGTGAAGATGGTGCTCAAGGTGGGGACCTTTATGBTGCCTTCACGCTCAAGGTGGAGTGACAGGAAGGCAACCAACCAACCAAACAGTTTA]
[+] EMBL OS38116 [TCTTTATTGTGAAAATAAAATGTATAGATAGGTGGTGAAGATGGTGCTCAAGGTGGGGACCTTTATGBTGCCTTCACGCTCAAGGTGGAGTGACAGGAAGGCAACCAACCAACCAAACAGTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13834#1 ------------------------------------------------------------
consensus_13834#3 ------------------------------------------------------------
consensus_13834#2 ------------------------------------------------------------
consensus_13834#4 ------------------------------------------------------------
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 AAATTAACCCAAGTAGGATGCATTTTTCTTGACCTGAATCATGCTTGCTTTGCAGCATGC 60
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 ------------------------------------------------------------
consensus_13834#3 ------------------------------------------------------------
consensus_13834#2 ------------------------------------------------------------
consensus_13834#4 ------------------------------------------------------------
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 ATGCCTGCCGTAAAGTCTAAGCTTCACATGGTTATTATTAGTTAATTAATAGTAGAAATA 120
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 ------------------------------------------------------------
consensus_13834#3 ------------------------------------------------------------
consensus_13834#2 ------------------------------------------------------------
consensus_13834#4 ------------------------------------------------------------
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 ATATAGTCATTTCTGCTACCTACTCCCACTTTCTGAGAGAATACCTGTTGATAAATTAAA 180
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 ----------------------------------------------CAGCCATGGCGCCC 14
consensus_13834#3 ------------------------------------------------------------
consensus_13834#2 ------------------------------TCGTCCAGTCCAGGTTCAGCCATGGCGCCC 30
consensus_13834#4 ------------------------------------------------------------
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 CTTCCTGTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGCGCCC 240
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 ACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCG 74
consensus_13834#3 ------------------------------------------------------------
consensus_13834#2 ACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCG 90
consensus_13834#4 ------------------------------------------------------------
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 ACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCG 300
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 CTCCTGCGGGCGG-GGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGC 133
consensus_13834#3 ------------------------------------------------------------
consensus_13834#2 CTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGC 150
consensus_13834#4 ------------------------------------------------------------
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 CTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGC 360
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 GGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAN-ACC 192
consensus_13834#3 -----------------------------------------------TGGCGTCAGCACC 13
consensus_13834#2 GGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACC 210
consensus_13834#4 ------------------------------------------------------------
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 GGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACC 420
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 GGCTTCGGAGACACCACCGTNGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCC 252
consensus_13834#3 GGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCC 73
consensus_13834#2 GGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCC 270
consensus_13834#4 ------------------------------------------------------------
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 GGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCC 480
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 CCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTG 312
consensus_13834#3 CCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTG 133
consensus_13834#2 CCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTG 330
consensus_13834#4 ------------------------------------------------------------
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 CCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTG 540
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 ATGATGTGCGTGAACC-TCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGT 371
consensus_13834#3 ATGATGTGCGTGAACC-TCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGT 192
consensus_13834#2 ATGATGTGCGTGAACC-TCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGT 389
consensus_13834#4 --------CGTGAACCCTCTACTTCACCGCCGGCGAGAAACAACGCAGCACCATC-CGGT 51
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 ATGATGTGCGTGAACC-TCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGT 599
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 GATCGGCCACGACGACACCACGGCCACGGTGAGGGAG-TGTTCCGTGGTGGGCGGCACGG 430
consensus_13834#3 GATCGGCCACGACGACACCACGGCCACGGTGAGGGAG-CTGTCCGTGGTGGGCGGCACGG 251
consensus_13834#2 GATCGGCCACGACGACACCACGGCCACGGTGAGGGAG-CTGTCCGTGGTGGGCGGCACGG 448
consensus_13834#4 GATCGGCCACGACGACACCACGGCCACGGTGAGGGAGACTGTCC-TGGTGG-CGGCACGG 109
consensus_13834#6 ---------------------------------------------------TCTTTATTG 9
consensus_13834#0 GATCGGCCACGACGACACCACGGCCACGGTGAGGGAG-CTGTCCGTGGTGGGCGGCACGG 658
consensus_13834#5 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGN 60
*
consensus_13834#1 GCAA-TTCAGGATGGCCACCGGCTACGTGGCGTGGAAGACGGCCAGCATGAACTCCAGCA 489
consensus_13834#3 GCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGNCAGCATGAGCGCCAGCA 311
consensus_13834#2 GCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCA 508
consensus_13834#4 GCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCA 169
consensus_13834#6 TGAAAAT-AAAATGTATA---GATAGGTGGTGAAGATGGTGCTCAAGGTGGGGACCTTTA 65
consensus_13834#0 GCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCA 718
consensus_13834#5 CTAAGCTTCACATGGTTATT-ATTAGTTAATTAATAGTAGAAATAATATAGTCATTTCTG 119
** * *** * ** * * * *
consensus_13834#1 CCTGGCGTGTACTAGCCCGACGT----CTACGCGACCACCGCCAACGCGCAAACTAATCG 545
consensus_13834#3 CC-GGCGTGTTCGAGCTCGACGT----CTACGTCACCACGCCCAACGCCACAACCA-TCG 365
consensus_13834#2 CC-GGCGTGTTCGAGCTCGACGT----CTACGTCACCACGCCCAACGCCACAACCA-TCG 562
consensus_13834#4 CC-GGCGTGTTCGAGCTCGACGT----CTACGTCACCACGCCCAACGCCACAACCA-TCG 223
consensus_13834#6 T--GBTGCCTTCACGCTCAAGGTGGAGTGACAGGAAGGCAACCAACCAACCAAACAGTTT 123
consensus_13834#0 CC-GGCGTGTTCGAGCTCGACGT----CTACGTCACCACGCCCAACGCCACAACCA-TCG 772
consensus_13834#5 CTACCTACTCCCACTTTC---------TGAGAGAATACCTGTTGATAAATTAAACTTCCT 170
* * * * * * **
consensus_13834#1 ACGCCCTCCGGCACACATATATCATCAGACGACGCGTTGCCGACCACATCTCACTACGCC 605
consensus_13834#3 ACGCCTCCGCGCCGGTGT-CGCCGTTGGACG--GCGGAGGCAGCAGCGGGTCG--ACGTC 420
consensus_13834#2 ACGCCTCCGCGCCGGTGT-CGCCGTTGGACG--GCGGAGGCAGCAGCGGGTCG--ACGTC 617
consensus_13834#4 ACGCCTCCGCGCCGGTGT-C-CCGTTGGACG--GCGGAGGCAGCAGCGGGTCG--ACGTC 277
consensus_13834#6 A----------------------------------------------------------- 124
consensus_13834#0 ACGCCTCCGCGCCGGTGT-CGCCGTTGGACG--GCGGAGGCAGCAGCGGGTCG--ACGTC 827
consensus_13834#5 GTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGNGCCC------ 224
consensus_13834#1 AAGAGTAGCGATGTCTCCAGCCACTTCTACGCTCCCTCAGTGCACTCCGAGTTGCTAC-T 664
consensus_13834#3 GA---CGGCGAAGTC---GGGCGCG---GCGNNGCGACAG-GTGGNGTGGNTGAATGCGT 470
consensus_13834#2 GA---CGGCGAAGTC---GGGCGCG---GCGGGGCGACAG-GTGGGGTGGGTGAGTGCGT 667
consensus_13834#4 GA---CGGCGAA-TC---GGGC-CG---GCGGGGCGACAG-GTGGGGTGGGTGAGTGCGT 325
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 GA---CGGCGAAGTC---GGGCGCG---GCGGGGCGACAG-GTGGGGTGGGTGAGTGCGT 877
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 GCCGATGATACTGTTGTGGT-TCTGCCTCTAGTTGATCGTTATAGTGTGAGGTAA----- 718
consensus_13834#3 GCGTATGGNNTT-TGGTGGTGNCCNTTGNTTGNNNNTNNTTNNNNNNNNNTNNNN----- 524
consensus_13834#2 GCGTAGTGGGGT-TGGTGGT----GGCGTTGGTTGGGCGTGGTTG-GTGAGGCGTCGAGT 721
consensus_13834#4 GCGTAGTGGGGT-TGGTGGT----GGCGTTGGTTGGGCGTGGTTG-GTGAGG-------- 371
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 GCGTAGTGGGGT-TGGTGGT----GGCGTTGGTTGGGCGTGGTTG-GTGAGGCGTCGAGT 931
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 -GACATAGAGTTAGTATTTGTTTCGAGCCTTATCTA-GGCTGCGGCCCGGCTCGTTT--T 774
consensus_13834#3 -TNNTNNNTNTCNNNNNTTTTTTGGGGNTTTTTTTT-GTTTTNNNTTTTTTNTTTGT--T 580
consensus_13834#2 CGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTT 781
consensus_13834#4 ------TGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTT 425
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 CGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTT 991
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 CGTTACAGGCCGCTA-TACAGTCATGCCGCGTAGT-CAGGTGAGCAGGCTTATCTGAAAA 832
consensus_13834#3 GGNTTGGGTTT------------------------------------------------- 591
consensus_13834#2 GGAATCGGATTCCCG-TACTGAACCTGCTTTTACTGCAAGTTAATTGTTTGGTTGGTTGG 840
consensus_13834#4 GGAATCGGATTCCCG-TACTGAACCTGCTTTTACTGCAAGTTAATTGTTTGGTTGGTTGG 484
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 GGAATCGGATTCCCGGTACTGAACCTGCTTTTTCTGCCAAAAAAAAAAAAAAAAAAAA-- 1049
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 TTAGGCCTCAGCACCGAGCAGCACTGGCAGTGAACAGTTCGTGCGCGCCGCGACCTGTGA 892
consensus_13834#3 ------------------------------------------------------------
consensus_13834#2 TT--GCCTTCCTGTCACTCCACCTTGACCGTGAA-GGTATTACTGTACTGCAGCATAAAG 897
consensus_13834#4 TT--GCCTTCCTGTCACTCCACCTTGAGCGTGAA-GG-------------CAGCATAAAG 528
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 ------------------------------------------------------------
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 GATTCACAGTACACCCCTCGTGTGTGACTTGTCGTTTCGTTCCTCCTAATCTAGTCTTTG 952
consensus_13834#3 ------------------------------------------------------------
consensus_13834#2 GTCCCCACCTTGACCACCATCTTCACCATCTATCTATACATTTTATTTTCACAAAAA--- 954
consensus_13834#4 GTCCCCCCCTTGAGCAAAAAAAAAA----------------------------------- 553
consensus_13834#6 ------------------------------------------------------------
consensus_13834#0 ------------------------------------------------------------
consensus_13834#5 ------------------------------------------------------------
consensus_13834#1 TATGTGCGATCCATCGGCCACGCCGCATGCTCTTCCGTTGTCTTGCCTACTAC 1005
consensus_13834#3 -----------------------------------------------------
consensus_13834#2 -----------------------------------------------------
consensus_13834#4 -----------------------------------------------------
consensus_13834#6 -----------------------------------------------------
consensus_13834#0 -----------------------------------------------------
consensus_13834#5 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||