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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1681 fasta sequence
[AATCCTGTTGGCAACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATAGTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAAAAACTATCACACGATGGTGGAAAGAGCTTAACGTTGAATCCAACTTAAGATTCATTCGGGATAGAATAGTGGAAATGCATTTTTGGATGACAGGAGCATGCTCGGAGCCCCATTATTCTCTTTTACGAATTATACTTACAAAGATGACAGCATTTATCACCATTCTAGATGATATATTTGATACATATGCTACAACCGAGGAGAGCATGATGCTTGCCAAAGCGATATATATGTGCAATGAATCTGCAACAGTTCTACTTCCAAAATACATGAAGGATTTCTACTTATATTATTTAAAGACATTTGATTCATTTGAAGAGGCACTAGGTCCAAACAAAAGTTATCGAGTGCTTTATTTCAAAGAGCTGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTGCACCAACAAACCTTCAGCCAAAAATCGTGGCAAGAACAGTTATTGATTTTGCACGAACTGGGGATTATATATACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAAC-CATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTATCTCGTTGTCACAGATATTATGTGCAATATTCTCCCCGCCAGTAATAAGATATATACTAATTGCTCAAA]
[+] EMBL CB620992 [AATCCTTTAGGCGACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATAGTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTT AAAACTATCACACGATGGTGGAAAGAG ]
[+] EMBL CB620824 [AATCATGTTGGCAACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATAGTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAAAAACTATCACACGATGGTGGAAAGAGCTTTACGTTGAAT ]
[+] EMBL CB620896 [aactCTGTTGGCAACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGGTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAGGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGGGATCACGCTGCAACGACTTGGATTGGATAGTTACTACGAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAGAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTT ]
[+] EMBL CB620713 [aattagGTTGGCAACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATAGTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAAAAACTATCACACGATGGTGGAAAGAGCTTAACGTTGAATCCAACTTn ]
[+] EMBL CB620649 [ AATCAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATAGTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAAAAACTATCACACGATGGTGGAAAGAGCTTAACGTTGAATCCAACTTAAGATTCATTCGGGATAGAATAGTGGAAATGCA ]
[+] EMBL AK108761 [ CACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAAAAGTACTTGATGAAGCAGTTGTTTTCACTACTAACCGCCTAAGATCAGAATTGAAACATTTGAAATCTCCGGTAGCCGATGAAGTGTCTCTTGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACAAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATGTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAAAAACTATCACACGATGGTGGAAAGAGCTTAACGTTGAATCCAACTTAAGCTTCATTCGGGATAGAATAGTGGAAATGCATTTTTGGATGACAGGAGCATGCTCGGAGCCCCATTATTCTCTTTTACGAATTATACTTACAAAGATGACAGCATTTATCACCATTCTAGATGATATATTTGATACATATGCTACAACCGAGGAGAGCATGATGCTTGCCAAAGCGATATATATGTGCAATGAATCTGCAACAGTTCTACTTCCAAAATACATGAAGGATTTCTACTTATATTATTTAAAGACATTTGATTCATTTGAAGAGGCACTAGGTCCAAACAAAAGTTATCGAGTGCTTTATTTCAAAGAGCTGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTGCACCAACAAACCTTCAGCCAAAAATCGTGGCAAGAACAGTTATTGATTTTGCACGAACTGGGGATTATATATACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAAC CATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTA ]
[-] EMBL CB620897 [ ACCTTTTCTCATACAATCAAGGATATGATAGCATCGCTTTACGTTGAGCCATATAGCATTTAAATCGCCGCGGGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAACTCATCGTTAGTTAAGCTTCATTAGAAAGTTTCCAGGGTTAAAGAATTGTTTTTCCTTATCTCGTTGTCACAGATATTATGTGCAATATTCTCCCCGCCAGTAATAAGATATATACTAATTGCTCAAA]
consensusID : consensus_13837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 816 fasta sequence
[TCATTGGAAGAAGCACTATGTCCAAACAAAAGTTATCGAGTGTGTTATCTCAAAGAGTTGTTCAAGAGGTTAGTTCAAGAATTCTCTCAAGAGATAAAATGGCGTGATGATCATTACATTCCAAAAACAATAGAGGAACACCTGGAACATTCAAGAAAGACTGTTGGTGCCTTTGAACTAGCATGTGCTTCTTTTGTTGGGATGGGCGACCTTGTAGCAAAGGAAACTCTTGATTGCCTTTTGACTTATCCAGAACTTCTTAAGTCTTTCACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACCACCATGCTTCTACAATTCAGAGTTATATGCTCCAACATGGTGCAACAGCGCATGAAGCATGCGTTGGGATAAAGGAGTTGATAGAAGACTCATGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGTTGATTCATTCACTATTTCACATACAATCAAGGATATGATAGCATCGCTCTATATGGAGCCGTATAACATTTAAATCAAAACATGTATTTACATTATAAATATTATATTATCCAATATAGAGTTTCAAATTGTAATATATATTCACTAGCTTTCAATAATGTGTTGGTGGCTGTTGATCACCAAATAATCATTACTTTCAGCCTCATTAGAAAGTTTCCATGGTTAAGGTAAGAAATGTTTTCCTTAGCTTGTTGTCACAATATTATGTGCAATATACTAA]
[-] EMBL CB619208 [TCATTGGAAGAAGCACTATGTCCAAACAAAAGTTATCGAGTGTGTTATCTCAAAGAGTTGTTCAAGAGGTTAGTTCAAGAATTCTCTCAAGAGATAAAATGGCGTGATGATCATTACATTCCAAAAACAATAGAGGAACACCTGGAACATTCAAGAAAGACTGTTGGTGCCTTTGAACTAGCATGTGCTTCTTTTGTTGGGATGGGCGACCTTGTAGCAAAGGAAACTCTTGATTGCCTTTTGACTTATCCAGAACTTCTTAAGTCTTTCACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACCACCATGCTTCTACAATTCAGAGTTATATGCTCCAACATGGTGCAACAGCGCATGAAGCATGCGTTGGGATAAAGGAGTTGATAGAAGACTCATGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGTTGATTCATTCACTATTTCACATACAATCAAGGATATGATAGCATCGCTCTATATGGAGCCGTATAACATTTAAATCAAAACATGTATTTACATTATAAATATTATATTATCCAATATAGAGTTTCAAATTGTAATATATATTCACTAGCTTTCAATAATGTGTTGGTGGCTGTTGATCACCAAATAATCATTACTTTCAGCCTCATTAGAAAGTTTCCATGGTTAAGGTAAGAAATGTTTTCCTTAGCTTGTTGTCACA ]
[-] EMBL CB621159 [ TCAAGAGGTTAGTTCAAGAATTCTCTCAAGAGATAAAATGGCGTGATGATCATTTCATTCCAAAAACAATAGAGGAACGCCTGGAACATTCAAGAAAGACTGTTGGTGCCTTTGAACTAGCATGTGCTTCTTTTGTTGGGATGGGCGACCTTGTAGCAAAGGAAACTCTTGCTTGCCTTTTGACTTATCCAGAACTTCTTAAGTCTTTCCCAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCCCCACCATGCTTCTACAATTCAGAGTTATATGCTCCAACATGGTGCAACAGCGCATGAAGCATGCGTTGGGATAAAGGAGTTGATAGAAGACTCATGGAAGGATATGATGAAAGAATTCCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGTTGATTCATTCATTATTTCACATACAATCAAGGATATGATAGCATCGCTCTATATGGAGCCGTATAACATTTAAATCCAAACATGTATTTACATTATAAATATTATATTATCCAATATAGAGTTTCAAATTGTAATATATATTCCCTAGCTTTCAATAATGTGTTGGTGGCTGTTGATCACCAAATAATCATTACTTTCACCCTCATTAGAAAGTTTCCATGGTTAAAGTAAGAAATGTTTTCCTTAGCTTGTTGTCACAATATTATGTGCAATATACTAA]
consensusID : consensus_13837#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 791 fasta sequence
[GCAACCATAGAAGAGAGAATTTTAATTTGCTAAGAGATGTCGTCGCCACCTGCAGCTTTCTCCAATGAAGGCGATGAGCAGCCACAGCGAAGGGCTCCTACAAGCTTCCACCCTAGCCTCTGGGGCAATTTCTTCCTCAGTTACCAGCCACCTACTGCGCTTAAGCATGCTTACATGAAAGAACGGGTTCAAGTTGTGAAAGAAGAAGTTAGGAAGGTAGTAAAGGGCTCGAGTGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGGCTTGGATTGGATAGTTACTACGAGACTGAGATAAACGACCTTCTCTGCATTGTTTACAACACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGAAAGAACGGCTATGATGTGTCATCTGATATGTTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGCTGATGACGTAAGAAGTCTTTTGAGCTTATATAATGCGGCATTTCTGAGGACTCATGGTGAAAAAGTACTTGATGAAGCAATTGTTTTTACAACTAACCGCCTTAGATCCGAATTGGAACATTTGAAATCTCTGGCAGCTGATGAAGTGTCTCTTGCTCTTAATACACCCCTGTTCCGGAGGGTTAGAATATTAGAAATACGAAACTATATTCCTATTTATGAAAGTGCTACTACACGAAACGAATCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCCTTC-ACTTATTTATTGTGAGGAGCTANAATCTATCACAGGATGGTGGAA]
[+] EMBL CB621158 [GCAACCATAGAAGAGAGAATTTTAATTTGCTAAGAGATGTCGTCGCCACCTGCAGCTTTCTCCAATGAAGGCGATGAGCAGCCACAGCGAAGGGCTCCTACAAGCTTCCACCCTAGCCTCTGGGGCAATTTCTTCCTCAGTTACCAGCCACCTACTGCGCTTAAGCATGCTTACATGAAAGAACGGGTTCAAGTTGTGAAAGAAGAAGTTAGGAAGGTAGTAAAGGGCTCGAGTGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGGCTTGGATTGGATAGTTACTACGAGACTGAGATAAACGACCTTCTCTGCATTGTTTACAACACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGAAAGAACGGCTATGATGTGTCATCTGATATGTTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGCTGATGACGTAAGAAGTCTTTTGAGCTTATATAATGCGGCATTTCTGAGGACTCATGGTGAAAAAGTACTTGATGAAGCAATTGTTTTTACAACTAACCGCCTTAGATCCGAATTGGAACATTTGAAATCTCTGGCAGCTGATGAAGTGTCTCTTGCTCTTAATACACCCCTGTTCCGGAGGGTTAGAATATTAGAAATACGAAACTATATTCCTATTTATGAAAGTGCTACTACACGAAACGAATCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCCTTC ACTTATTTATTGTGAGGAGCTANAATCTATCACAGGATGGTGGAA]
[+] EMBL CB619207 [GCACCTATAGAAGAGAGAATTTTAATTTGCTAAGAGATGTCGTCGCCACCTGCAGCTTTCTCCAATGAAGGCGATGAGCAGCCACAGCGAAGGGCTCCTACAAGCTTCCACCCTAGCCTCTGGGGCAATTTCTTCCTCAGTTACCAGCCACCTACTGCGCTTAAGCATGCTTACATGAAAGAACGGGTTCAAGTTGTGAAAGAAGAAGTTAGGAAGGTAGTAAAGGGCTCGAGTGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGGCTTGGATTGGATAGTTACTACGAGACTGAGATAAACGACCTTCTCTGCATTGTTTACAACACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGAAAGAACGGCTATGATGTGTCATCTGATATGTTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGCTGATGACGTAAGAAGTCTTTTGAGCTTATATAATGCGGCATTTCTGAGGACTCATGGTGAAAAAGTACTTGATGAAGCAATTGTTTTTACAACTAACCGCCTTAGATCCGAATTGGAACATTTGAAATCTCTGGCAGCTGATGAAGTGTCTCTTGCTCTTAATACACCCCTGTTCCGGAGGGTTAGAATATTAGAAATACGANACTATATTCCTATTTATGAGAGTGCTACTACACGAAACGAATCCATATTAGAATTTGCAAAGTTGAATTTCAATCT CCTTCAACTTATTTATTGTGAGGAGC ]
consensusID : consensus_13837#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence
[TGGCGTGATGATCATTACATTCCAAAAACAATAGAGGAACACCTGGAACTTTCCAGAACGACTGTTGGTGCCTTTCAACTAGCATGTGCTTCTTTAGTTGGGATGGGTGATTTTATAACAGAGGATACTCTCGATTATCTTTTGACTTATCCAAAACTTCTTAAGTCTTACACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAACCATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTATCTTGTTGTCACAATATTATGTGCAATATTCTCCC-C-GCCAGTAATAAGATATATACTAATTGC]
[-] EMBL CB620714 [TGGCGTGATGATCATTACATTCCAAAAACAATAGAGGAACACCTGGAACTTTCCAGAACGACTGTTGGTGCCTTTCAACTAGCATGTGCTTCTTTAGTTGGGATGGGTGATTTTATAACAGAGGATACTCTCGATTATCTTTTGACTTATCCAAAACTTCTTAAGTCTTACACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAACCATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTATCTTGTTGTCACAATATTATGTGCAATATTCTCCC CTGCCAGTAATAAGATATATAC ]
[-] EMBL CB620993 [ CATTCCAAAAACAATAGAGGAACACCTGGAACTTTCCAGAACGACTGTTGGTGCCTTTCAACTAGCATGTGCTTCTTTAGTTGGGATGGGTGATTTTATAACAGAGGATACTCTCGATTATCTTTTGACTTATCCAAAACTTCTTAAGTCTTACACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAACCATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTATCTTGTTGTCACAATATTATGTGCAATATTCTCCC C GCCAGTAATAAGATATATACTAATTGC]
[-] EMBL CB620825 [ ATAGAGGAACACCTGGAACTTTCCAGAACGACTGTTGGTGCCTTTCAACTAGCATGTGCTTCTTTAGTTGGGATGGGTGATTTTATAACAGAGGATACTCTCGATTATCTTTTGACTTATCCAAAACTTCTTAAGTCTTACACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAACCATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTATCTTGTTGTCACAATATTATGTGCAATATTCTCCCAG GCCAGTAATAAGATATA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 AATCCTGTTGGCAACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCAT 60
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 CGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCC 120
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 ACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATG 180
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 CTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCT 240
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 CAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATA 300
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 GTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACG 360
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 ATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATG 420
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 TGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACA 480
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 CAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTAC 540
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 TTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAAT 600
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 CTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAA 660
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 TAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCA 720
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ------------------------------------------------------------
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 TATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAA 780
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 ----------------------------------TCATTGGAAGAAGCACTATGTCCAAA 26
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 AAACTATCACACGATGGTGGAAAGAGCTTAACGTTGAATCCAACTTAAGATTCATTCGGG 840
consensus_13837#2 ------------------------------------------------------------
consensus_13837#1 CAAAAGTTATCGAGTGTGTTATCTCAAAGAGTTGTTCAAGAGGTTAGTTCAAGAATTCTC 86
consensus_13837#3 ------------------------------------------------------------
consensus_13837#0 ATAGAATAGTGGAAATGCATTTTTGGATGACAGGAGCATGCTCGGAGCCCCATTATTCTC 900
consensus_13837#2 ------------------------------GCAACCATAGAAGAGAGAATTTTAATTTGC 30
consensus_13837#1 TC--AAGAGATAAAATGGCGT-GATGA------TCATTAC-ATTCCAAA-AACAATAGAG 135
consensus_13837#3 ---------------TGGCGT-GATGA------TCATTAC-ATTCCAAA-AACAATAGAG 36
consensus_13837#0 TTTTACGAATTATACTTACAAAGATGACAGCATTTATCACCATTCTAGA-TGATATATTT 959
consensus_13837#2 TAAGAGATGTCGTCGCCACCT-GCAGCTTTCTCCAATGAAGGCGATGAGCAGCCACAGCG 89
* * * ** * * *
consensus_13837#1 GA--ACACCTGGAACATTCAAGAAAGACTGTTGGTGCCTTTGAACTAGCATGTGCT--TC 191
consensus_13837#3 GA--ACACCTGGAACTTTCCAGAACGACTGTTGGTGCCTTTCAACTAGCATGTGCT--TC 92
consensus_13837#0 GAT-ACATATGCTACAACCGAGGAGAGCA--TGATGCTTGCCAAAGCG-ATATATA--TG 1013
consensus_13837#2 AAGGGCTCCTACAAGCTTCCACCCTAGCCTCTGGGGCAATTTCTTCCTCAGTTACCAGCC 149
* * * * * * * ** ** * *
consensus_13837#1 TTTTGTTGGGATG-GGCGACCTTG-TAGCAAAGGAAACTCTTGATTGCCTTTTGACTTAT 249
consensus_13837#3 TTTAGTTGGGATG-GGTGATTTTA-TAACAGAGGATACTCTCGATTATCTTTTGACTTAT 150
consensus_13837#0 TGCAATGAATCTGCAACAGTTCTACTTCCAAAATACATGAAGGATTTCTACTTATATTAT 1073
consensus_13837#2 ACCTACTGCGCTTAAGCATGCTTA-CATGAAAGAACGGGTTCAAGTTGTGAAAGAAGAAG 208
* * * * * * * *
consensus_13837#1 CCAG--AACTTCTTAAGTCTTT--------CACAACATGTGTACG---GCTCTCAAATGA 296
consensus_13837#3 CCAA--AACTTCTTAAGTCTTA--------CACAACATGTGTACG---GCTCTCAAATGA 197
consensus_13837#0 TTAA--AGACATTTGATTCATTTGAAGAGGCACTAGGTCCAAACAAAAGTTATCGAGTGC 1131
consensus_13837#2 TTAGGAAGGTAGTAAAGGGCTCGAGTGAAGTACCAGAGATATTGG---ATCTTGTGATCA 265
* * * * * ** * * *
consensus_13837#1 TATTGCTTCAACAAA--GCGTGAACAAGCAGGGGACCACCACCATGCTTCTACAATTCAG 354
consensus_13837#3 TATTGCTTCAACAAA--GCGTGAACAAGCAGGGGACCACTA---TGCTTCCACAATTCAG 252
consensus_13837#0 T-TTATTTCAAAGAGCTGCGTGAACAAGCAGGGGACCACTA---TGCTTCCACAATTCAG 1187
consensus_13837#2 CGCTGCAACGGCTTG--GATTGGATAGTTACTACGAGACTGAGATAAACGACCTTCTCTG 323
* * * ** * * * ** * * ** *
consensus_13837#1 AGTTATATGCTCCAACATGGTGCAACAGCGCATGAAGCATGCGTTGGGA-TAAAGGAGTT 413
consensus_13837#3 TGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGA-TAAAGGAGTT 311
consensus_13837#0 TGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGA-TAAAGGAGTT 1246
consensus_13837#2 CATTGTTTACAACACCG-ACTACAACGATA-AAGATTTACACCTAGTTTCTCTTCGATTT 381
** * * ** * * **** * ** * * * * * ** **
consensus_13837#1 GATAGAAGACTCATGGAAGGATATGATGAAAGAA-TACCTTACACCAACAGACCTGCAAC 472
consensus_13837#3 GATAGAAGATTCGTGGAAGGATATGATGAAAGAA-TACCTTACACCAACAGACCTGCAAC 370
consensus_13837#0 GATAGAAGATTCGTGGAAGGATATGATGAAAGAA-TACCTTGCACCAACAAACCTTCAGC 1305
consensus_13837#2 TATCTTCTACGAAAGAACGGCTATGATGTGTCATCTGATATGTTTCAACAT-TTTAAAGA 440
** * * * ** ******* * * * ***** * *
consensus_13837#1 CAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGC 532
consensus_13837#3 CAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGC 430
consensus_13837#0 CAAAAATCGTGGCAAGAACAGTTATTGATTTTGCACGAACTGGGGATTATATATACAAGC 1365
consensus_13837#2 CAAAGA----GGGGAGTTTTGTTGCTGATGACGTAAGAAGTCTTTTGAGCTTATATAATG 496
**** * ** ** *** **** * *** * ** **
consensus_13837#1 AAGTTGATTCATTCACTATTTCACATACAATCAAGGATATGATAGCATCGCTCTATATGG 592
consensus_13837#3 AAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTG 490
consensus_13837#0 AAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTG 1425
consensus_13837#2 CGGCATTTCTGAGGACTCATGGTGAAAAAGTACTTGATGAAGCAAT-TGTTTTTACAACT 555
* * ** * * * * * *** * * * **
consensus_13837#1 AGCCGTATAACATTTAAATCAAAACATGT-ATTTACATTATAAATATTATATTATCCAAT 651
consensus_13837#3 AGCCATATAGCATTTAAATCACCACACGC-ATTTACATTATAAATATTATATTATCAAGT 549
consensus_13837#0 AGCCATATAGCATTTAAATCACCACACGC-ATTTACATTATAAATATTATATTATCAAGT 1484
consensus_13837#2 AACCGCCTTAGATCCGAATTGGAACATTTGAAATCTCTGGCAGCTGATGAAGTGTCTCTT 615
* ** * ** *** *** * * * * * * * * ** *
consensus_13837#1 A-TAGAGTTTCA-AATTGTAATATATATTCACTAGCTTTCAATAATGTGTTGGTGGCTGT 709
consensus_13837#3 A-AGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGC 608
consensus_13837#0 A-AGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGC 1543
consensus_13837#2 GCTCTTAATACACCCCTGTTCCGGAGGGTTAGAATATTAGAAATACGAAACTATA-TTCC 674
* ** *** * * * * ** ** * * * *
consensus_13837#1 TGATCACCAAATAATCATTACTTTCAGC---CTCATTAGAAAGTTTCCATGGTTAAGGTA 766
consensus_13837#3 TGATCATGAAACCATCGTTAGTTA-AGC---TTCATTAGAAAGTTTCCATGGTTAA---- 660
consensus_13837#0 TGATCATGAAACCATCGTTAGTTA-AGC---TTCATTAGAAAGTTTCCATGGTTAA---- 1595
consensus_13837#2 TATTTATGAAAGTGCTACTACACGAAACGAATCCATATTAGAATTTGCAAAGTTGAATTT 734
* * * *** ** * * *** * * *** ** *** *
consensus_13837#1 AGAAATGTTTT-CCTTAGCTTGTTGTCACA--ATATTATGTGCAATATACTAA------- 816
consensus_13837#3 AGAATTGTTTTTCCTTATCTTGTTGTCACA--ATATTATGTGCAATATTCTCCCCGCCAG 718
consensus_13837#0 AGAATTGTTTTTCCTTATCTCGTTGTCACAG-ATATTATGTGCAATATTCTCCCCGCCAG 1654
consensus_13837#2 CAATCTCCCTTCACTTA-TTTATTGTGAGGAGCTANAATCTATCACAGGATGGTGGAA-- 791
* * ** **** * **** * ** ** * * * *
consensus_13837#1 ---------------------------
consensus_13837#3 TAATAAGATATATACTAATTGC----- 740
consensus_13837#0 TAATAAGATATATACTAATTGCTCAAA 1681
consensus_13837#2 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||