These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1800 fasta sequence [GGCTGGGACAACCTTAGGGGCATCTCTCCACGATTTTATCTCATCCGTTTGGCCCTGCTGCTGCTGTGCTGCCCCTTCTCTAGGGTTTTGACTCCTAAACCGCCGCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTG-CCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGC-TTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTAATTCTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAACCAAGTGCTACATACCAGAATACACAAGGAACAGATTCTGATAGCGATCCAAACAATACTACTGTATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCCTTCAGTCCATATGGAGAACTTGTCTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA-TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG-AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA-GCCTATGTTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTT-AGGGA-GGGAGTATTGGAGTGAACA-TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGAAATAAT-AAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTATTGCACTGGAGCCGTTTTCTGTTTGCGTCCCTAAATAATCCTGCTTTGAGCCGGTGACTGGATGATGTTGGCAGCATTCCATTGAACTGAAGTGTTGATTTGATTTTTATCAAAAAAAAAAACAAAAAAAA] [+] EMBL AK101593 [GGCTGGGACAACCTTAGGGGCATCTCTCCACGATTTTATCTCATCCGTTTGGCCCTGCTGCTGCTGTGCTGCCCCTTCTCTAGGGTTTTGACTCCTAAACCGCCGCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTG CCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGC TTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTAATTCTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAACCAAGTGCTACATACCAGAATACACAAGGAACAGATTCTGATAGCGATCCAAACAATACTACTGTATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCCTTCAGTCCATATGGAGAACTTGTCTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA GCCTATGTTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTT AGGGA GGGAGTATTGGAGTGAACA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGAAATAAT AAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTATTGCACTGGAGCCGTTTTCTGT ] [+] EMBL AU181201 [ CTCCTAAACCGCCGCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTG CCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGC TTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGNTATAATGGNCA ] [+] EMBL AU068995 [ TCCTAAACCGCCGCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCCCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAG TGNCCCCTCCGCCGGCGCCGGCTGGTGGCGCAG AGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGCTTTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTTGGCAANCTGAGGGTTATGGTTTCATTGAATTTGGCAG CATNCTATAG CGAACAAGTTTTNCAAGGCTATAATGGTC AATGATG CTAATGGTAATn ] [+] EMBL CB618903 [ TAAACCGCCGCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTG CCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGC TTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTAATTCTTCAAGATACATTCAAGGCCCATTACCAGTCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAA ] [+] EMBL OSR20782A [ ATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTAATTCTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACG ] [+] EMBL CA767095 [ TAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAACCAAGTGCTACATACCAGAATACACAAGGAACAGATTCTGATAGCGATCCAAACAATACTACTGTATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCCTTCAGTCCATATGGAGAACTTGTCTACGTCAAGATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGCTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAA TTTTTGAACTGGTGCTTGNGCTATCTTTGNTGAACGTCGNGTGCACGCCCA GCCTATGNTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTTAAGGGA GGGAGTNTTGGAGGGNACATTTTTTCNCTTGCTTAAAAAGTTTTGTCGCCATGGGTACCATTANAANAGGA ] [-] EMBL CB618904 [ TTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCCTTCAGTCCATATGGAGAACTTGTCTACGTCAAGATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGCTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA GCCTATGTTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTT AGGGA GGGAGTATTGGAGTGAACA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGAAATAAT AAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTATTGCACTGGAGCCGTTTTCTGTTTGCGTCCCTAAA ] [+] EMBL AU181202 [ GATGAGGTTNTGAACCAAGCCTTCAGTCCATATGGAGAACTTGTNTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAAaaaa ] [-] EMBL CB682166 [ GCCTTCAGTCCATATGGAGAACTTGTCTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGATGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCTTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCACGCCTATGTTGTAACATGACATTTTACTGAGGCTTAGGT CCATTAGAATGACAGCTTTT AGGGA GGGAGTATTGGAGTGAACA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTTGAAGGGGAGTTGAGCAAGCAAa ] [-] EMBL CA759175 [ TCAGTCCATATGGAGAACTNGTCTACGTCAAGATACCTGTAGGAAAGCGTGNTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGCTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA GCCTATGTTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTT AGGGA GGGAGTATTGGAGTGAACA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGAAATAAT AAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTATTGCAaaaaaa ] [+] EMBL AU101566 [ ACGTC AAATACCTGTAGGAAAGCGTTGTNGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAATTTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATGAAAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAA TTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA GCCTATGTTGTAACATGACATTTTACTGAGGCCTANGTGACACTAGAATGACAGCTTTT AGGGAGGGGAGTATTGGAGTGACCA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTNGAGCAAGAAATAATAAAGTTTGTNACATTAGACATCGGCGGACATTTTAATCGGGCACTTTGGTAT ] [+] EMBL AU101567 [ TATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA GCCTATGTTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTT AGGGA GGGAGTATTGGAGTGAACA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGAAATAAT AAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTATTGCACTGGAGCCGTTTTCTGTTTGCGTCCCTAGTTAATCCTGCTTTGAGCCGGTGACTGGATGATGTTGGCAGCATTCCATTGAACTGAAGTGTTGATTTGATTTTTATCAAAAAAAAAAACAAAAAAAA] consensusID : consensus_13845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1065 fasta sequence [GCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTGCCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGCTTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTGATTCTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGGAAAATATAGGTGGCCAACAACAACCAAGTGGTAAAGCTTTCTTTCACAGCTAGTTCCTACTTTTGAATATTTCATTAGAAATGTAAACATTTTATTCAGTGAGATGATATGATAATTCGCAATAGATCAAGCATTTTTGTGCTACTTGCTGTTTATCATAACATTGTTTGCTTGGAAAGAAGGGACCGTGTTCCTTGTTTCGATGGTTATGGTCGAAGTCTAGAGTGTCACTTCGATAGTTAGGTAGTTTAGTTGATATGCAATGTTTTAGTGTGGCTGTACTAAAAACTGCAACATCTGCAATTTGGAATGTTTGGTCAAC] [+] EMBL AK119985 [GCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTGCCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGCTTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTGATTCTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGGAAAATATAGGTGGCCAACAACAACCAAGTGGTAAAGCTTTCTTTCACAGCTAGTTCCTACTTTTGAATATTTCATTAGAAATGTAAACATTTTATTCAGTGAGATGATATGATAATTCGCAATAGATCAAGCATTTTTGTGCTACTTGCTGTTTATCATAACATTGTTTGCTTGGAAAGAAGGGACCGTGTTCCTTGTTTCGATGGTTATGGTCGAAGTCTAGAGTGTCACTTCGATAGTTAGGTAGTTTAGTTGATATGCAATGTTTTAGTGTGGCTGTACTAAAAACTGCAACATCTGCAATTTGGAATGTTTGGTCAAC] consensusID : consensus_13845#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence [TGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAACCAAGTGCTACATACCAGAATACACAAGGAACAGATTCTGATAGCGATCCAAACAATACTACTGTATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCTTTCAGTCCATATGGAGAACTTGTCTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAATTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGGTTAAGGCACTCTAGGATTCCACACTGGATATGGAATTTTACATTGCTTACTCTTGCACAGATAAAAGTGACAGTTTTCTGTTTTTTTTTTCCTTCCGCTTTTGCAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATGAAATAGTTTTGGCAACTTTGGTGTAATTGGCATGA] [+] EMBL AK063783 [TGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAACCAAGTGCTACATACCAGAATACACAAGGAACAGATTCTGATAGCGATCCAAACAATACTACTGTATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCTTTCAGTCCATATGGAGAACTTGTCTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAATTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGGTTAAGGCACTCTAGGATTCCACACTGGATATGGAATTTTACATTGCTTACTCTTGCACAGATAAAAGTGACAGTTTTCTGTTTTTTTTTTCCTTCCGCTTTTGCAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATGAAATAGTTTTGGCAACTTTGGTGTAATTGGCATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13845#0 GGCTGGGACAACCTTAGGGGCATCTCTCCACGATTTTATCTCATCCGTTTGGCCCTGCTG 60 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 CTGCTGTGCTGCCCCTTCTCTAGGGTTTTGACTCCTAAACCGCCGCCCCCGTCCTCCCGC 120 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 GCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCG 180 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 CAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCA 240 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 CCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTGCCCCTCCGCCGGCGCCGGCT 300 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 GGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATG 360 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 GAAGAGAACTACCTGTACAACTGCTTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATA 420 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 ATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCAT 480 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 GCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAG 540 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ---------------------------------------------------GCCCCCGTC 9 consensus_13845#0 GTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCA 600 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 CTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCC 69 consensus_13845#0 GATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTAATTCTTCAAGAT 660 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 TCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGC 129 consensus_13845#0 ACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACT 720 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 GCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTGCCCCTCCGCCGGC 189 consensus_13845#0 GGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCA 780 consensus_13845#2 ----------------------------------------TGGATGAACAGACACGTGCA 20 consensus_13845#1 GCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTT 249 ***** * * * * consensus_13845#0 ATGACTGAAATGAA------TGGACAATATTGTTCTAGCAGGCCTATGCG--TATTGGAC 832 consensus_13845#2 ATGACTGAAATGAA------TGGACAATATTGTTCTAGCAGGCCTATGCG--TATTGGAC 72 consensus_13845#1 CTGGATGGAAGAGAACTACCTGTACAAC-TGCTTCTCCCAGGCCGGCGAGCTTATCTCAG 308 ** ** ** * ** **** * **** ****** * * *** * consensus_13845#0 CAGCATCCAACAAGAAAAATATAGGTGGCCAAC--AACAACCAAGTGCT------ACATA 884 consensus_13845#2 CAGCATCCAACAAGAAAAATATAGGTGGCCAAC--AACAACCAAGTGCT------ACATA 124 consensus_13845#1 CAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTG 368 ** * *** ** * *** **** * * * * * * consensus_13845#0 CCAGA-ATACACAAG--GAACAGATTCTG-ATAGCGAT-----CCAAACAATACTACTGT 935 consensus_13845#2 CCAGA-ATACACAAG--GAACAGATTCTG-ATAGCGAT-----CCAAACAATACTACTGT 175 consensus_13845#1 GCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCC-TAAT 427 *** ** * ** ***** ***** * ** ** **** ** * * consensus_13845#0 ATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGA-AACAAGCCTTCAGTC 994 consensus_13845#2 ATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGA-AACAAGCTTTCAGTC 234 consensus_13845#1 GGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGAT 487 * * * * ** ** ** * * * *** *** * **** * ** consensus_13845#0 CATATGGAGAACTTGTCTACGTCAA---AATACCTGTAGGAAAGCGTTGTGGATTTG--- 1048 consensus_13845#2 CATATGGAGAACTTGTCTACGTCAA---AATACCTGTAGGAAAGCGTTGTGGATTTG--- 288 consensus_13845#1 GATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTGATT 547 ** * * *** * * ** *** ****** consensus_13845#0 -TTCAATATTCCAATAGGGCT---------TCAGCTGAGGAGGCCATAAGGATGCTAAAT 1098 consensus_13845#2 -TTCAATATTCCAATAGGGCT---------TCAGCTGAGGAGGCCATAAGGATGCTAAAT 338 consensus_13845#1 CTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGAC 607 ***** ** * * *** **** * *** ** * * * * * consensus_13845#0 GGAAGCCAATTAGGAGGTCAGAGCA-TAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAA 1157 consensus_13845#2 GGAAGCCAATTAGGAGGTCAGAGCA-TAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAA 397 consensus_13845#1 AGAAGT--ACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAAC 665 **** * * * * *** * ** ** *** * * * * ** **** * consensus_13845#0 GCAGCCTCAGCAAGACCAGAACCAATGGA--ATGCTGG-CTATTATGGATATCCCCCCCA 1214 consensus_13845#2 GCAGCCTCAGCAAGACCAGAACCAATGGA--ATGCTGG-CTATTATGGATATCCCCCCCA 454 consensus_13845#1 AGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTG 725 * * * *** ** ****** ** ** *** * * *** * consensus_13845#0 AGGATATGATCCATATGGTTATGTTCGGCCGCCT-CAAGATCCT----GCCATGTACGCT 1269 consensus_13845#2 AGGATATGATCCATATGGTTATGTTCGGCCGCCT-CAAGATCCT----GCCATGTACGCT 509 consensus_13845#1 GACCAGCATCCAACAAGGAAAATATAGGTGGCCAACAACAACCAAGTGGTAAAGCTTTCT 785 * * * ** * * ** *** *** * ** * * * ** consensus_13845#0 TATGCAGC-ATATCCTGGATACGGGAATT--ATCAACAACC--AGCGCCACAGCAGCCCC 1324 consensus_13845#2 TATGCAGC-ATATCCTGGATACGGGAATT--ATCAACAACC--AGCGCCACAGCAGCCCC 564 consensus_13845#1 TTCACAGCTAGTTCCTACTTTTGAATATTTCATTAGAAATGTAAACATTTTATTCAGTGA 845 * **** * **** * * *** ** * ** * * * consensus_13845#0 CTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATGAAATAGTTT 1384 consensus_13845#2 CTCAACAGGTTAA------GGCACTCTAGGATTCCA-CACTGGATATGG-AATTTTACAT 616 consensus_13845#1 GATGATATGATAATTCGCAATAGATCAAGCATTTTTGTGCTACTTGCTG---TTTATCAT 902 * * * ** ** * * * * consensus_13845#0 TGGCAACTTTGGTGTAATTGGCA-TGAAAATTTTTTGAACTGTTGCTTGTGCTATC---- 1439 consensus_13845#2 TGCTTACTCTTGCACAGATAAAAGTGACAGTTTTCTGTTTTTTTTTTCCTTCCGCT---- 672 consensus_13845#1 AACAT-TGTTTGCTTGGAAAGAAGGGACCGTGTTCCTTGTTTCGATGGTTATGGTCGAAG 961 * * * ** * ** * * consensus_13845#0 TTTGTTG-A--ACGTCGTGTGCACGCCCAGCCTATGTTGTAACATGACATTT-TACTGAG 1495 consensus_13845#2 TTTGCAGTA--AGAACAAGTGTTGGTCAAG--TGCCCTATCACAACATATGA-TGAAATA 727 consensus_13845#1 TCTAGAGTGTCACTTCGATAGTTAGGTAGTTTAGTTGATATGCAATGTTTTAGTGTGGCT 1021 * * * * * * * ** * * consensus_13845#0 GCCTAGGTGACACTAGAAT-----GACAGCTTTTAGGGAGGGAGTATTGGAGTGAACATT 1550 consensus_13845#2 GTTTTGGCAACTTTGGTGT-----AATTGGCATGA------------------------- 757 consensus_13845#1 GTACTAAAAACTGCAACATCTGCAATTTGGAATGTTTGGTCAAC---------------- 1065 * ** * * * consensus_13845#0 TTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGA 1610 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 AATAATAAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTAT 1670 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 TGCACTGGAGCCGTTTTCTGTTTGCGTCCCTAAATAATCCTGCTTTGAGCCGGTGACTGG 1730 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 ATGATGTTGGCAGCATTCCATTGAACTGAAGTGTTGATTTGATTTTTATCAAAAAAAAAA 1790 consensus_13845#2 ------------------------------------------------------------ consensus_13845#1 ------------------------------------------------------------ consensus_13845#0 ACAAAAAAAA 1800 consensus_13845#2 ---------- consensus_13845#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||