cluster # 1385

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Oryza sativa
cluster # 1385 cluster # 1385 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1385#0 length = 794 sequences # 1

consensus_1385#1 length = 564 sequences # 1

consensusID : consensus_1385#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 794
fasta sequence

                              [TAAAAAAGTAACAGTTTCTGTACTTTATTGAGGTTCGCTTCGCTAGAGAGAAATGTCCGCTGCTGACCGCAAGGCCGTGATCAAGAACGCCGACATGTCCGAGGACATGCAGACGGACGCGACTGAAATCGCCACCCAGGCGATGGAGAAGTTCAACATCGAGAAGGACATCGCCGCGTACATCAAGAAGGAGTTCGACAAGAAGTACAACCCCACTTGGCACTGCATCGTGGGCCGCAACTTCGGCTCGTACGTGACGCACGAGACGAAGCACTTCATCTACTTCTACCTCGGCCAGGTCGCCATCCTGCTCTTCAAGTCGGGATAAGCCCCTCACCATTGGCGCGGCTTATTTAGATTGTAGTGAGACATGAGAGAACGGTGGGTTCGCCTGAACGGATACATCGCGAGAGGCACTCTTTTTACTGAAGCCCCCAACCCCCGACTTCTGGAACCCTGTGTCGTGTCGAGGCGATTTCCCACCTTCTCCGCTTTCACACATCCCCCCTCCAAAAGCCAACGCCACACACTCCACACGCCACACCATCAACATCTACGAATCCCCCAAGCGCCATCGCGACCTTCTCCCGCACCCTCTCGCTCTGTGTTCGAATTTCGATTCAAGAAAGACCACTACCACGCGCCCTCTCTTCATGTCCGTCATCATCGGATGTGGGGTGGGCGGTGCGGTTTTTTTCGGAACGTCAATACTTCGAGGGGTGGTGGGCCTGTTGCTTTGGGCCGCCTTTGCGCCACAATTGTGATTTTCTTTTTCTTCGGATTTACCAATTCTC]

[+] EMBL AK062727             [TAAAAAAGTAACAGTTTCTGTACTTTATTGAGGTTCGCTTCGCTAGAGAGAAATGTCCGCTGCTGACCGCAAGGCCGTGATCAAGAACGCCGACATGTCCGAGGACATGCAGACGGACGCGACTGAAATCGCCACCCAGGCGATGGAGAAGTTCAACATCGAGAAGGACATCGCCGCGTACATCAAGAAGGAGTTCGACAAGAAGTACAACCCCACTTGGCACTGCATCGTGGGCCGCAACTTCGGCTCGTACGTGACGCACGAGACGAAGCACTTCATCTACTTCTACCTCGGCCAGGTCGCCATCCTGCTCTTCAAGTCGGGATAAGCCCCTCACCATTGGCGCGGCTTATTTAGATTGTAGTGAGACATGAGAGAACGGTGGGTTCGCCTGAACGGATACATCGCGAGAGGCACTCTTTTTACTGAAGCCCCCAACCCCCGACTTCTGGAACCCTGTGTCGTGTCGAGGCGATTTCCCACCTTCTCCGCTTTCACACATCCCCCCTCCAAAAGCCAACGCCACACACTCCACACGCCACACCATCAACATCTACGAATCCCCCAAGCGCCATCGCGACCTTCTCCCGCACCCTCTCGCTCTGTGTTCGAATTTCGATTCAAGAAAGACCACTACCACGCGCCCTCTCTTCATGTCCGTCATCATCGGATGTGGGGTGGGCGGTGCGGTTTTTTTCGGAACGTCAATACTTCGAGGGGTGGTGGGCCTGTTGCTTTGGGCCGCCTTTGCGCCACAATTGTGATTTTCTTTTTCTTCGGATTTACCAATTCTC]




>consensus_1385#0
TAAAAAAGTAACAGTTTCTGTACTTTATTGAGGTTCGCTTCGCTAGAGAGAAATGTCCGC
TGCTGACCGCAAGGCCGTGATCAAGAACGCCGACATGTCCGAGGACATGCAGACGGACGC
GACTGAAATCGCCACCCAGGCGATGGAGAAGTTCAACATCGAGAAGGACATCGCCGCGTA
CATCAAGAAGGAGTTCGACAAGAAGTACAACCCCACTTGGCACTGCATCGTGGGCCGCAA
CTTCGGCTCGTACGTGACGCACGAGACGAAGCACTTCATCTACTTCTACCTCGGCCAGGT
CGCCATCCTGCTCTTCAAGTCGGGATAAGCCCCTCACCATTGGCGCGGCTTATTTAGATT
GTAGTGAGACATGAGAGAACGGTGGGTTCGCCTGAACGGATACATCGCGAGAGGCACTCT
TTTTACTGAAGCCCCCAACCCCCGACTTCTGGAACCCTGTGTCGTGTCGAGGCGATTTCC
CACCTTCTCCGCTTTCACACATCCCCCCTCCAAAAGCCAACGCCACACACTCCACACGCC
ACACCATCAACATCTACGAATCCCCCAAGCGCCATCGCGACCTTCTCCCGCACCCTCTCG
CTCTGTGTTCGAATTTCGATTCAAGAAAGACCACTACCACGCGCCCTCTCTTCATGTCCG
TCATCATCGGATGTGGGGTGGGCGGTGCGGTTTTTTTCGGAACGTCAATACTTCGAGGGG
TGGTGGGCCTGTTGCTTTGGGCCGCCTTTGCGCCACAATTGTGATTTTCTTTTTCTTCGG
ATTTACCAATTCTC

consensusID : consensus_1385#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [ACGGCTTAGGCAGTGAGAGCACCTGCCCGGTCGGACGGAGTGCCTGAGCCGCGCCGCCGCCGCCCCCTCCCGCCGGGACCCGTCGCAGCCGCCAGCGCCCCCGACCCGCGGTAGCCATGTGTGACCGCAAGGCCGTGATCAGAAATGCGGACATGTCGGAGGAGATGCAGCAGGACTCGGTGGAGTGTGCCACCCAGGCCCTGGAGAAGTACAACATAGGGAAGGACATCGCAGCCCACATCAAGAAGGAGTTTGACAAGAAGTACAACCCCACCTGGCACTGCACCGTGGGGAGGAACTTCGGCAGCTACGTGACGCACGAGACAAAGCACTTCATCTACTTCTACCTGGGCCAGGTCGCCATTCTCCTGTTCAAGCCTGGTTAGAGCATGGCCTGTGCCTCCTGCCCCGAGAGCCATCCAGATCACAAGGACTGCAGCCTAAATTCCAAATACCAGAGACTGAACTATCTTCAGCGTTGCCATGGGAACACCTCGAGCTTTACGCCTTTATTGTGTTGTTGTTGTACAGGGCATCCTATGTACTAGTTTGTTGTGGTTATAA]

[+] EMBL AK064654             [ACGGCTTAGGCAGTGAGAGCACCTGCCCGGTCGGACGGAGTGCCTGAGCCGCGCCGCCGCCGCCCCCTCCCGCCGGGACCCGTCGCAGCCGCCAGCGCCCCCGACCCGCGGTAGCCATGTGTGACCGCAAGGCCGTGATCAGAAATGCGGACATGTCGGAGGAGATGCAGCAGGACTCGGTGGAGTGTGCCACCCAGGCCCTGGAGAAGTACAACATAGGGAAGGACATCGCAGCCCACATCAAGAAGGAGTTTGACAAGAAGTACAACCCCACCTGGCACTGCACCGTGGGGAGGAACTTCGGCAGCTACGTGACGCACGAGACAAAGCACTTCATCTACTTCTACCTGGGCCAGGTCGCCATTCTCCTGTTCAAGCCTGGTTAGAGCATGGCCTGTGCCTCCTGCCCCGAGAGCCATCCAGATCACAAGGACTGCAGCCTAAATTCCAAATACCAGAGACTGAACTATCTTCAGCGTTGCCATGGGAACACCTCGAGCTTTACGCCTTTATTGTGTTGTTGTTGTACAGGGCATCCTATGTACTAGTTTGTTGTGGTTATAA]




>consensus_1385#1
ACGGCTTAGGCAGTGAGAGCACCTGCCCGGTCGGACGGAGTGCCTGAGCCGCGCCGCCGC
CGCCCCCTCCCGCCGGGACCCGTCGCAGCCGCCAGCGCCCCCGACCCGCGGTAGCCATGT
GTGACCGCAAGGCCGTGATCAGAAATGCGGACATGTCGGAGGAGATGCAGCAGGACTCGG
TGGAGTGTGCCACCCAGGCCCTGGAGAAGTACAACATAGGGAAGGACATCGCAGCCCACA
TCAAGAAGGAGTTTGACAAGAAGTACAACCCCACCTGGCACTGCACCGTGGGGAGGAACT
TCGGCAGCTACGTGACGCACGAGACAAAGCACTTCATCTACTTCTACCTGGGCCAGGTCG
CCATTCTCCTGTTCAAGCCTGGTTAGAGCATGGCCTGTGCCTCCTGCCCCGAGAGCCATC
CAGATCACAAGGACTGCAGCCTAAATTCCAAATACCAGAGACTGAACTATCTTCAGCGTT
GCCATGGGAACACCTCGAGCTTTACGCCTTTATTGTGTTGTTGTTGTACAGGGCATCCTA
TGTACTAGTTTGTTGTGGTTATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1385#0      ---------------------------------------------TAAAAAAGTAACAGT 15
consensus_1385#1      ACGGCTTAGGCAGTGAGAGCACCTGCCCGGTCGGACGGAGTGCCTGAGCCGCGCCGCCGC 60
                                                                    *     *   * * 

consensus_1385#0      TTCTGTACTTTATTGAGGTTCGCT----TCGCTAGAGAGAAATGTCCGCTGC-------- 63
consensus_1385#1      CGCCCCCTCCCGCCGGGACCCGTCGCAGCCGCCAGCGCCCCCGACCCGCGGTAGCCATGT 120
                        *           * *   **       *** ** *        **** *         

consensus_1385#0      -TGACCGCAAGGCCGTGATCAAGAACGCCGACATGTCCGAGGACATGCAGACGGACGCGA 122
consensus_1385#1      GTGACCGCAAGGCCGTGATCAGAAATGCGGACATGTCGGAGGAGATGCAGCAGGACTCGG 180
                       ********************  ** ** ******** ***** ******  **** ** 

consensus_1385#0      CTGAAATCGCCACCCAGGCGATGGAGAAGTTCAACATCGAGAAGGACATCGCCGCGTACA 182
consensus_1385#1      TGGAGTGTGCCACCCAGGCCCTGGAGAAGTACAACATAGGGAAGGACATCGCAGCCCACA 240
                        **    ***********  ********* ****** * ************ **  ***

consensus_1385#0      TCAAGAAGGAGTTCGACAAGAAGTACAACCCCACTTGGCACTGCATCGTGGGCCGCAACT 242
consensus_1385#1      TCAAGAAGGAGTTTGACAAGAAGTACAACCCCACCTGGCACTGCACCGTGGGGAGGAACT 300
                      ************* ******************** ********** ******  * ****

consensus_1385#0      TCGGCTCGTACGTGACGCACGAGACGAAGCACTTCATCTACTTCTACCTCGGCCAGGTCG 302
consensus_1385#1      TCGGCAGCTACGTGACGCACGAGACAAAGCACTTCATCTACTTCTACCTGGGCCAGGTCG 360
                      *****   ***************** *********************** **********

consensus_1385#0      CCATCCTGCTCTTCAAGTCGGGATAAGCCCCTCACCATTGGCGCGGCTTATTTAGATTGT 362
consensus_1385#1      CCATTCTCCTGTTCAAGCCTGGTTAGAG----CATGGCCTGTGCCTCCTGCCCCGAGAGC 416
                      **** ** ** ****** * ** **       **      * **  * *     **  * 

consensus_1385#0      AGTGAGACATGAGAGAACGGTGGGTTCGCCTGAACGGATACATCGCGAGAGGCACTCTTT 422
consensus_1385#1      CATCCAGATCACAAGGACTGCAGCCTAAATT--CCAAATAC--CAGAGACTGAACTATCT 472
                        *          ** ** *  *  *    *   *  ****  *       * *** * *

consensus_1385#0      TTACTGAAGCCCCC--AAC-CCCCGACTTCTGGAACCCTGTGTCGTGTCGAGGCGATTTC 479
consensus_1385#1      TCAGCGTTGCCATGGGAACACCTCGAGCTTT--ACGCCTTTATTGTGTTGTTGTTGTACA 530
                      * *  *  ***     *** ** ***  * *  *  *** * * **** *  *   *   

consensus_1385#0      CCACCTTCTCCGCTTTCACACATCCCCCCTCCAAAAGCCAACGCCACACACTCCACACGC 539
consensus_1385#1      GGGCATCCTATGTACTAGTTTGTTGTGGTTATAA-------------------------- 564
                         * * **  *   *      *      *  **                          

consensus_1385#0      CACACCATCAACATCTACGAATCCCCCAAGCGCCATCGCGACCTTCTCCCGCACCCTCTC 599
consensus_1385#1      ------------------------------------------------------------
                                                                                  

consensus_1385#0      GCTCTGTGTTCGAATTTCGATTCAAGAAAGACCACTACCACGCGCCCTCTCTTCATGTCC 659
consensus_1385#1      ------------------------------------------------------------
                                                                                  

consensus_1385#0      GTCATCATCGGATGTGGGGTGGGCGGTGCGGTTTTTTTCGGAACGTCAATACTTCGAGGG 719
consensus_1385#1      ------------------------------------------------------------
                                                                                  

consensus_1385#0      GTGGTGGGCCTGTTGCTTTGGGCCGCCTTTGCGCCACAATTGTGATTTTCTTTTTCTTCG 779
consensus_1385#1      ------------------------------------------------------------
                                                                                  

consensus_1385#0      GATTTACCAATTCTC 794
consensus_1385#1      ---------------